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PDB: 214 件

315D
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CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS
分子名称: DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3')
著者Biswas, R, Wahl, M.C, Ban, C, Sundaralingam, M.
登録日1997-02-26
公開日1997-09-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs
J.Mol.Biol., 267, 1997
6EDI
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Crystal structure of Leishmania braziliensis glucokinase
分子名称: Glucokinase
著者Buechner, G.S, Millington, M.E, Perry, K, D'Antonio, E.L.
登録日2018-08-09
公開日2018-08-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The crystal structure of glucokinase from Leishmania braziliensis.
Mol. Biochem. Parasitol., 227, 2019
1TRA
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BU of 1tra by Molmil
RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES
分子名称: MAGNESIUM ION, TRNAPHE
著者Westhof, E, Sundaralingam, M.
登録日1986-05-16
公開日1986-07-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles.
Biochemistry, 25, 1986
5ARC
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Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase
分子名称: 5-methyl-2-(5-methylpyridin-2-yl)pyridine, CALCIUM ION, GLYCEROL, ...
著者Sharma, M, Diaz-Rodriguez, A, Offen, W.A, Palm-Espling, M.E, Pordea, A, Wormald, M.R, Mcdonough, M, Davies, G.J, Davis, B.G.
登録日2015-09-24
公開日2016-09-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Cooperative Bio-Metallic Selectivity in a Tailored Protease Enables Creation of a C-C Cross-Coupling Heckase
To be Published
1D79
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HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION
分子名称: DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
著者Thota, N, Li, X.H, Bingman, C.A, Sundaralingam, M.
登録日1992-06-12
公開日1993-04-15
最終更新日2023-03-22
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.
Acta Crystallogr.,Sect.D, 49, 1993
304D
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SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM
分子名称: DISTAMYCIN A, DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3')
著者Chen, X, Ramakrishnan, B, Sundaralingam, M.
登録日1997-01-03
公開日1997-09-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC).
J.Mol.Biol., 267, 1997
5ARB
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Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase
分子名称: 5-methyl-2-(5-methylpyridin-2-yl)pyridine, CALCIUM ION, CHLORIDE ION, ...
著者Sharma, M, Diaz-Rodriguez, A, Offen, W.A, Palm-Espling, M.E, Pordea, A, Wormald, M.R, Mcdonough, M, Davies, G.J, Davis, B.G.
登録日2015-09-24
公開日2016-09-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Cooperative Bio-Metallic Selectivity in a Tailored Protease Enables Creation of a C-C Cross-Coupling Heckase
To be Published
5ARD
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Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase
分子名称: 5-methyl-2-(5-methylpyridin-2-yl)pyridine, CALCIUM ION, GLYCEROL, ...
著者Sharma, M, Diaz-Rodriguez, A, Offen, W.A, Palm-Espling, M.E, Pordea, A, Wormald, M.R, Mcdonough, M, Davies, G.J, Davis, B.G.
登録日2015-09-24
公開日2016-09-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Cooperative Bio-Metallic Selectivity in a Tailored Protease Enables Creation of a C-C Cross-Coupling Heckase
To be Published
323D
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CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM
分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE
著者Tippin, D.B, Sundaralingam, M.
登録日1997-03-17
公開日1997-05-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
395D
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CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
分子名称: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3')
著者Ban, C, Sundaralingam, M.
登録日1998-04-29
公開日1998-05-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of Two Isomorphous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC)
To be Published
325D
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CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM
分子名称: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3')
著者Tippin, D.B, Sundaralingam, M.
登録日1997-03-17
公開日1997-05-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
375D
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A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
分子名称: DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN
著者Chen, X, Rao, S.T, Sekar, K, Sundaralingam, M.
登録日1998-01-14
公開日1998-12-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A Novel End-to-End Binding of Two Netropsins to the DNA Decamers d(CCCCCIIIII) 2, d(CCCBr5CCIIIII)2, d(CBr5CCCCIIIII)2
Nucleic Acids Res., 26, 1998
8QHH
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NMR solution structure of the green kiwi fruit allergen Act d 8.0101
分子名称: Bet v 1 related allergen
著者Zeindl, R, Tollinger, M.
登録日2023-09-08
公開日2023-11-08
実験手法SOLUTION NMR
主引用文献NMR resonance assignments of the PR-10 allergens Act c 8 and Act d 8 from golden and green kiwifruit.
Biomol NMR Assign, 15, 2021
8QHI
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NMR solution structure of the golden kiwi fruit allergen Act c 8.0101
分子名称: Major allergen Pru ar like
著者Zeindl, R, Tollinger, M.
登録日2023-09-08
公開日2023-11-08
実験手法SOLUTION NMR
主引用文献NMR resonance assignments of the PR-10 allergens Act c 8 and Act d 8 from golden and green kiwifruit.
Biomol NMR Assign, 15, 2021
5AQ8
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DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, OFF7_DB12V4, THIOCYANATE ION
著者Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
登録日2015-09-21
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQA
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DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
分子名称: OFF7_DB04V3, THIOCYANATE ION
著者Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
登録日2015-09-21
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQ7
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DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
分子名称: D12_DB04V3, MALONATE ION
著者Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
登録日2015-09-21
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
5AQE
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Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase
分子名称: (4-VINYLPHENYL)METHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
著者Sharma, M, Diaz-Rodriguez, A, Offen, W.A, Palm-Espling, M.E, Pordea, A, Wormald, M.R, Mcdonough, M, Davies, G.J, Davis, B.G.
登録日2015-09-22
公開日2015-10-07
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Bisubstrate Localisation by a Tailored Serine Protease Allows Creation of a Heck-Ase
To be Published
4N71
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X-Ray Crystal Structure of 2-amino-1-hydroxyethylphosphonate-bound PhnZ
分子名称: FE (III) ION, Predicted HD phosphohydrolase PhnZ, [(1R)-2-amino-1-hydroxyethyl]phosphonic acid
著者Woersdoerfer, B, Lingaraju, M, Yennawar, N, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.-E.
登録日2013-10-14
公開日2013-11-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.984 Å)
主引用文献Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4N6W
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X-Ray Crystal Structure of Citrate-bound PhnZ
分子名称: CITRATE ANION, FE (III) ION, Predicted HD phosphohydrolase PhnZ
著者Worsdorfer, B, Lingaraju, M, Yennawar, N.H, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.E.
登録日2013-10-14
公開日2013-11-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
8U6Y
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Preholo-Proteasome from Beta 3 D205 deletion
分子名称: Proteasome assembly chaperone 2, Proteasome chaperone 1, Proteasome maturation factor UMP1, ...
著者Walsh Jr, R.M, Rawson, S, Velez, B, Blickling, M, Razi, A, Hanna, J.
登録日2023-09-14
公開日2024-04-17
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Mechanism of autocatalytic activation during proteasome assembly.
Nat.Struct.Mol.Biol., 31, 2024
8U7U
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Proteasome 20S Core Particle from Beta 3 D205 deletion
分子名称: Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
著者Walsh Jr, R.M, Rawson, S, Velez, B, Blickling, M, Razi, A, Hanna, J.
登録日2023-09-15
公開日2024-04-17
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (2.16 Å)
主引用文献Mechanism of autocatalytic activation during proteasome assembly.
Nat.Struct.Mol.Biol., 31, 2024
6N82
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Crystal structure of human FPPS in complex with an allosteric inhibitor YF-02037
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Farnesyl pyrophosphate synthase, ...
著者Park, J, Schilling, M.A, Berghuis, A.M.
登録日2018-11-28
公開日2019-11-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Chirality-Driven Mode of Binding of alpha-Aminophosphonic Acid-Based Allosteric Inhibitors of the Human Farnesyl Pyrophosphate Synthase (hFPPS).
J.Med.Chem., 62, 2019
6N83
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Crystal structure of human FPPS in complex with an allosteric inhibitor YF-02037
分子名称: CHLORIDE ION, Farnesyl pyrophosphate synthase, PHOSPHATE ION, ...
著者Park, J, Schilling, M.A, Berghuis, A.M.
登録日2018-11-28
公開日2019-11-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Chirality-Driven Mode of Binding of alpha-Aminophosphonic Acid-Based Allosteric Inhibitors of the Human Farnesyl Pyrophosphate Synthase (hFPPS).
J.Med.Chem., 62, 2019
8B1U
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RecBCD-DNA in complex with the phage protein Abc2 and host PpiB
分子名称: Anti-RecBCD protein 2, DNA (70-MER), MAGNESIUM ION, ...
著者Wilkinson, M, Wilkinson, O.J, Feyerherm, C, Fletcher, E.E, Wigley, D.B, Dillingham, M.S.
登録日2022-09-12
公開日2022-12-28
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structures of RecBCD in complex with phage-encoded inhibitor proteins reveal distinctive strategies for evasion of a bacterial immunity hub.
Elife, 11, 2022

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