Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 304 results

2F4M
DownloadVisualize
BU of 2f4m by Molmil
The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Descriptor: CHLORIDE ION, UV excision repair protein RAD23 homolog B, ZINC ION, ...
Authors:Zhao, G, Zhou, X, Wang, L, Kisker, C, Lennarz, W.J, Schindelin, H.
Deposit date:2005-11-23
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways.
J.Biol.Chem., 281, 2006
3PR4
DownloadVisualize
BU of 3pr4 by Molmil
Dpo4 Y12A mutant incorporating dADP opposite template dT
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3'), ...
Authors:Kirouac, K.N, Suo, Z, Ling, H.
Deposit date:2010-11-29
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural mechanism of ribonucleotide discrimination by a Y-family DNA polymerase.
J.Mol.Biol., 407, 2011
2RDJ
DownloadVisualize
BU of 2rdj by Molmil
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
Descriptor: CALCIUM ION, DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'), DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'), ...
Authors:Wong, J.H.Y, Ling, H.
Deposit date:2007-09-24
Release date:2008-06-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4.
J.Mol.Biol., 379, 2008
2FTS
DownloadVisualize
BU of 2fts by Molmil
Crystal structure of the glycine receptor-gephyrin complex
Descriptor: Glycine receptor beta chain precursor, gephyrin
Authors:Kim, E.Y, Schindelin, H.
Deposit date:2006-01-24
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Deciphering the structural framework of glycine receptor anchoring by gephyrin.
Embo J., 25, 2006
3HP4
DownloadVisualize
BU of 3hp4 by Molmil
Crystal structure of psychrotrophic esterase EstA from Pseudoalteromonas sp. 643A inhibited by monoethylphosphonate
Descriptor: GDSL-esterase
Authors:Brzuszkiewicz, A, Nowak, E, Dauter, Z, Dauter, M, Cieslinski, H, Kur, J.
Deposit date:2009-06-03
Release date:2009-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of EstA esterase from psychrotrophic Pseudoalteromonas sp. 643A covalently inhibited by monoethylphosphonate.
Acta Crystallogr.,Sect.F, 65, 2009
3QQ7
DownloadVisualize
BU of 3qq7 by Molmil
Crystal Structure of the p97 N-terminal domain
Descriptor: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-02-15
Release date:2011-06-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Hierarchical Binding of Cofactors to the AAA ATPase p97.
Structure, 19, 2011
3GAE
DownloadVisualize
BU of 3gae by Molmil
Crystal Structure of PUL
Descriptor: CHLORIDE ION, GLYCEROL, Protein DOA1
Authors:Zhao, G, Schindelin, H, Lennarz, W.J.
Deposit date:2009-02-17
Release date:2009-12-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An Armadillo motif in Ufd3 interacts with Cdc48 and is involved in ubiquitin homeostasis and protein degradation
Proc.Natl.Acad.Sci.USA, 106, 2009
2HBA
DownloadVisualize
BU of 2hba by Molmil
Crystal Structure of N-terminal Domain of Ribosomal Protein L9 (NTL9) K12M
Descriptor: 50S ribosomal protein L9, CHLORIDE ION, IMIDAZOLE, ...
Authors:Cho, J.-H, Kim, E.Y, Schindelin, H, Raleigh, D.P.
Deposit date:2006-06-14
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Energetically significant networks of coupled interactions within an unfolded protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
2HPL
DownloadVisualize
BU of 2hpl by Molmil
Crystal structure of the mouse p97/PNGase complex
Descriptor: C-terminal of mouse p97/VCP, PNGase
Authors:Zhao, G, Zhou, X, Wang, L, Li, G, Lennarz, W, Schindelin, H.
Deposit date:2006-07-17
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3BII
DownloadVisualize
BU of 3bii by Molmil
Crystal Structure of Activated MPT Synthase
Descriptor: CHLORIDE ION, Molybdopterin-converting factor subunit 1, Molybdopterin-converting factor subunit 2
Authors:Daniels, J.N, Schindelin, H.
Deposit date:2007-11-30
Release date:2008-02-19
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.
Biochemistry, 47, 2008
2G9F
DownloadVisualize
BU of 2g9f by Molmil
Crystal structure of intein-tagged mouse PNGase C-terminal domain
Descriptor: CHLORIDE ION, GLYCEROL, peptide N-glycanase
Authors:Zhou, X, Zhao, G, Wang, L, Li, G, Lennarz, W.J, Schindelin, H.
Deposit date:2006-03-06
Release date:2006-10-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and biochemical studies of the C-terminal domain of mouse peptide-N-glycanase identify it as a mannose-binding module.
Proc.Natl.Acad.Sci.Usa, 103, 2006
3IPO
DownloadVisualize
BU of 3ipo by Molmil
Crystal structure of YnjE
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, GLYCEROL, ...
Authors:Haenzelmann, P, Kuper, J, Schindelin, H.
Deposit date:2009-08-18
Release date:2009-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains.
Protein Sci., 18, 2009
3Q8S
DownloadVisualize
BU of 3q8s by Molmil
Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
Descriptor: DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase iota, ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2011-01-06
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
To be Published
3IPP
DownloadVisualize
BU of 3ipp by Molmil
crystal structure of sulfur-free YnjE
Descriptor: GLYCEROL, PHOSPHATE ION, Putative thiosulfate sulfurtransferase ynjE, ...
Authors:Haenzelmann, P, Kuper, J, Schindelin, H.
Deposit date:2009-08-18
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains.
Protein Sci., 18, 2009
2I74
DownloadVisualize
BU of 2i74 by Molmil
Crystal structure of mouse Peptide N-Glycanase C-terminal domain in complex with mannopentaose
Descriptor: ACETATE ION, GLYCEROL, PNGase, ...
Authors:Zhou, X, Zhao, G, Wang, L, Li, G, Lennarz, W.J, Schindelin, H.
Deposit date:2006-08-30
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and biochemical studies of the C-terminal domain of mouse peptide-N-glycanase identify it as a mannose-binding module.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2PKO
DownloadVisualize
BU of 2pko by Molmil
Crystal structure of yeast Urm1 at 1.8 A resolution
Descriptor: Ubiquitin-related modifier 1
Authors:Lee, E.Y, Lake, M.W, Schindelin, H.
Deposit date:2007-04-18
Release date:2008-04-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The sulfurtransferase activity of Uba4 presents a link between ubiquitin-like protein conjugation and activation of sulfur carrier proteins.
Biochemistry, 47, 2008
3GV5
DownloadVisualize
BU of 3gv5 by Molmil
Human DNA polymerase iota in complex with T template DNA and incoming ddADP
Descriptor: 2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE, 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2009-03-30
Release date:2009-06-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
Embo J., 28, 2009
3PR5
DownloadVisualize
BU of 3pr5 by Molmil
Dpo4 Y12A mutant incorporating ADP opposite template dT
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3'), ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2010-11-29
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanism of ribonucleotide discrimination by a Y-family DNA polymerase.
J.Mol.Biol., 407, 2011
3GV8
DownloadVisualize
BU of 3gv8 by Molmil
Human DNA polymerase iota in complex with T template DNA and incoming dGTP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(*AP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2009-03-30
Release date:2009-06-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
Embo J., 28, 2009
3TIW
DownloadVisualize
BU of 3tiw by Molmil
Crystal structure of p97N in complex with the C-terminus of gp78
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase AMFR, Transitional endoplasmic reticulum ATPase
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-08-22
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The Structural and Functional Basis of the p97/Valosin-containing Protein (VCP)-interacting Motif (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE N-TERMINAL DOMAIN OF p97.
J.Biol.Chem., 286, 2011
2RDI
DownloadVisualize
BU of 2rdi by Molmil
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
Descriptor: DI(HYDROXYETHYL)ETHER, DNA polymerase IV, GLYCEROL
Authors:Wong, J.H.Y, Ling, H.
Deposit date:2007-09-24
Release date:2008-06-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4.
J.Mol.Biol., 379, 2008
3Q8P
DownloadVisualize
BU of 3q8p by Molmil
Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2011-01-06
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota.
Proc.Natl.Acad.Sci.USA, 108, 2011
3Q8Q
DownloadVisualize
BU of 3q8q by Molmil
Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2011-01-06
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota.
Proc.Natl.Acad.Sci.USA, 108, 2011
3E3I
DownloadVisualize
BU of 3e3i by Molmil
H. influenzae beta-carbonic anhydrase, variant G41A with 100 mM bicarbonate
Descriptor: BICARBONATE ION, Carbonic anhydrase 2, SULFATE ION, ...
Authors:Rowlett, R.S, Failing, H.
Deposit date:2008-08-07
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evidence for a bicarbonate "escort" site in Haemophilus influenzae beta-carbonic anhydrase .
Biochemistry, 49, 2010
2FU3
DownloadVisualize
BU of 2fu3 by Molmil
Crystal structure of gephyrin E-domain
Descriptor: gephyrin
Authors:Kim, E.Y, Schindelin, H.
Deposit date:2006-01-25
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Deciphering the structural framework of glycine receptor anchoring by gephyrin.
Embo J., 25, 2006

224201

数据于2024-08-28公开中

PDB statisticsPDBj update infoContact PDBjnumon