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PDB: 474 results

2GHB
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Thermotoga maritima maltotriose binding protein, ligand free form
Descriptor: maltose ABC transporter, periplasmic maltose-binding protein
Authors:Cuneo, M.J, Changela, A, Hocker, B, Beese, L.S, Hellinga, H.W.
Deposit date:2006-03-27
Release date:2007-02-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:T. maritima maltotriose binding protein open form
To be Published
2G9F
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BU of 2g9f by Molmil
Crystal structure of intein-tagged mouse PNGase C-terminal domain
Descriptor: CHLORIDE ION, GLYCEROL, peptide N-glycanase
Authors:Zhou, X, Zhao, G, Wang, L, Li, G, Lennarz, W.J, Schindelin, H.
Deposit date:2006-03-06
Release date:2006-10-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and biochemical studies of the C-terminal domain of mouse peptide-N-glycanase identify it as a mannose-binding module.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2NRO
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BU of 2nro by Molmil
MoeA K279Q
Descriptor: Molybdopterin biosynthesis protein moeA
Authors:Nicolas, J, Xiang, S, Schindelin, H, Rajagopalan, K.V.
Deposit date:2006-11-02
Release date:2007-01-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutational Analysis of Escherichia coli MoeA: Two Functional Activities Map to the Active Site Cleft.
Biochemistry, 46, 2007
1OVN
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BU of 1ovn by Molmil
Crystal Structure and Functional Analysis of Drosophila Wind-- a PDI-Related Protein
Descriptor: CESIUM ION, Windbeutel
Authors:Ma, Q, Guo, C, Barnewitz, K, Sheldrick, G.M, Soling, H.D, Uson, I, Ferrari, D.M.
Deposit date:2003-03-27
Release date:2004-02-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and functional analysis of Drosophila Wind, a protein-disulfide isomerase-related protein.
J.Biol.Chem., 278, 2003
4D82
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BU of 4d82 by Molmil
Metallosphera sedula Vps4 crystal structure
Descriptor: AAA ATPase, central domain protein, ADENOSINE-5'-DIPHOSPHATE
Authors:Caillat, C, Macheboeuf, P, Wu, Y, McCarthy, A.A, Boeri-Erba, E, Effantin, G, Gottlinger, H.G, Weissenhorn, W, Renesto, P.
Deposit date:2014-12-02
Release date:2015-11-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Asymmetric Ring Structure of Vps4 Required for Escrt-III Disassembly.
Nat.Commun., 6, 2015
2PKO
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BU of 2pko by Molmil
Crystal structure of yeast Urm1 at 1.8 A resolution
Descriptor: Ubiquitin-related modifier 1
Authors:Lee, E.Y, Lake, M.W, Schindelin, H.
Deposit date:2007-04-18
Release date:2008-04-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The sulfurtransferase activity of Uba4 presents a link between ubiquitin-like protein conjugation and activation of sulfur carrier proteins.
Biochemistry, 47, 2008
2NRP
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BU of 2nrp by Molmil
MoeA R350A
Descriptor: GLYCEROL, Molybdopterin biosynthesis protein moeA
Authors:Nicolas, J, Xiang, S, Schindelin, H, Rajagopalan, K.V.
Deposit date:2006-11-02
Release date:2007-01-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mutational Analysis of Escherichia coli MoeA: Two Functional Activities Map to the Active Site Cleft.
Biochemistry, 46, 2007
3QQ7
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BU of 3qq7 by Molmil
Crystal Structure of the p97 N-terminal domain
Descriptor: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-02-15
Release date:2011-06-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Hierarchical Binding of Cofactors to the AAA ATPase p97.
Structure, 19, 2011
4BX3
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BU of 4bx3 by Molmil
Crystal Structure of murine Chronophin (Pyridoxal Phosphate Phosphatase)
Descriptor: GLYCEROL, MAGNESIUM ION, PYRIDOXAL PHOSPHATE PHOSPHATASE
Authors:Knobloch, G, Gohla, A, Schindelin, H.
Deposit date:2013-07-08
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Chronophin Dimerization is Required for Proper Positioning of its Substrate Specificity Loop.
J.Biol.Chem., 289, 2014
2JN3
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BU of 2jn3 by Molmil
NMR structure of cl-BABP complexed to chenodeoxycholic acid
Descriptor: CHENODEOXYCHOLIC ACID, Fatty acid-binding protein, liver
Authors:Eliseo, T, Ragona, L, Catalano, M, Assfalf, M, Paci, M, Zetta, L, Molinari, H, Cicero, D.O.
Deposit date:2006-12-22
Release date:2007-07-03
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Structural and dynamic determinants of ligand binding in the ternary complex of chicken liver bile acid binding protein with two bile salts revealed by NMR
Biochemistry, 46, 2007
4BKM
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BU of 4bkm by Molmil
Crystal structure of the murine AUM (phosphoglycolate phosphatase) capping domain as a fusion protein with the catalytic core domain of murine chronophin (pyridoxal phosphate phosphatase)
Descriptor: MAGNESIUM ION, NITRATE ION, PYRIDOXAL PHOSPHATE PHOSPHATASE, ...
Authors:Knobloch, G, Seifried, A, Gohla, A, Schindelin, H.
Deposit date:2013-04-26
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Evolutionary and Structural Analyses of the Mammalian Haloacid Dehalogenase-Type Phosphatases Aum and Chronophin Provide Insight Into the Basis of Their Different Substrate Specificities.
J.Biol.Chem., 289, 2014
2K62
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BU of 2k62 by Molmil
NMR solution structure of the supramolecular adduct between a liver cytosolic bile acid binding protein and a bile acid-based Gd(III)-chelate
Descriptor: (3alpha,5alpha,8alpha)-3-[(N,N-bis{2-[bis(carboxymethyl)amino]ethyl}-L-gamma-glutamyl)amino]cholan-24-oic acid, Liver fatty acid-binding protein, YTTERBIUM (III) ION
Authors:Tomaselli, S, Zanzoni, S, Ragona, L, Gianolio, E, Aime, S, Assfalg, M, Molinari, H.
Deposit date:2008-07-03
Release date:2008-11-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the supramolecular adduct between a liver cytosolic bile acid binding protein and a bile acid-based gadolinium(III)-chelate, a potential hepatospecific magnetic resonance imaging contrast agent.
J.Med.Chem., 51, 2008
4EYH
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BU of 4eyh by Molmil
Human DNA polymerase iota incorporating dCTP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase iota, DNA primer, ...
Authors:Kirouac, K, Ling, H.
Deposit date:2012-05-01
Release date:2013-01-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.
Nucleic Acids Res., 41, 2013
2GHA
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BU of 2gha by Molmil
Thermotoga maritima maltotriose binding protein bound with maltotriose
Descriptor: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, maltose ABC transporter, periplasmic maltose-binding protein
Authors:Cuneo, M.J, Changela, A, Hocker, B, Beese, L.S, Hellinga, H.W.
Deposit date:2006-03-27
Release date:2007-02-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:T. maritima maltotriose binding protein
To be Published
3SSP
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BU of 3ssp by Molmil
Engineered low-affinity halide-binding protein derived from YFP: halide-free
Descriptor: Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.628 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
2GX6
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BU of 2gx6 by Molmil
Rational stabilization of E. coli ribose binding protein
Descriptor: D-ribose-binding periplasmic protein, beta-D-ribopyranose
Authors:Cuneo, M.J, Hellinga, H.W.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Rational stabilization of E. coli ribose binding protein
To be Published
3SSV
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BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: FLUORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
2NQK
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BU of 2nqk by Molmil
MoeA D59N mutant
Descriptor: Molybdopterin biosynthesis protein moeA
Authors:Nicolas, J, Xiang, S, Schindelin, H, Rajagopalan, K.V.
Deposit date:2006-10-31
Release date:2007-01-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mutational Analysis of Escherichia coli MoeA: Two Functional Activities Map to the Active Site Cleft.
Biochemistry, 46, 2007
2NQM
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BU of 2nqm by Molmil
MoeA T100A mutant
Descriptor: Molybdopterin biosynthesis protein moeA
Authors:Nicoas, J, Xiang, S, Schindelin, H, Rajagopalan, K.V.
Deposit date:2006-10-31
Release date:2007-01-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mutational Analysis of Escherichia coli MoeA: Two Functional Activities Map to the Active Site Cleft.
Biochemistry, 46, 2007
2Q5W
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BU of 2q5w by Molmil
The X-ray Crystal Structure of Molybdopterin Synthase from Staphylococcus aureus
Descriptor: GLYCEROL, Molybdopterin converting factor, subunit 1, ...
Authors:Daniels, J.N, Schindelin, H.
Deposit date:2007-06-03
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.
Biochemistry, 47, 2008
4EYI
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BU of 4eyi by Molmil
Human DNA polymerase iota incorporating dATP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA polymerase iota, DNA primer, ...
Authors:Kirouac, K, Ling, H.
Deposit date:2012-05-01
Release date:2013-01-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.
Nucleic Acids Res., 41, 2013
3QQ8
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BU of 3qq8 by Molmil
Crystal structure of p97-N in complex with FAF1-UBX
Descriptor: CHLORIDE ION, FAS-associated factor 1, Transitional endoplasmic reticulum ATPase
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-02-15
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hierarchical Binding of Cofactors to the AAA ATPase p97.
Structure, 19, 2011
2HPL
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BU of 2hpl by Molmil
Crystal structure of the mouse p97/PNGase complex
Descriptor: C-terminal of mouse p97/VCP, PNGase
Authors:Zhao, G, Zhou, X, Wang, L, Li, G, Lennarz, W, Schindelin, H.
Deposit date:2006-07-17
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2HPJ
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BU of 2hpj by Molmil
Crystal structure of the PUB domain of mouse PNGase
Descriptor: GLYCEROL, PNGase
Authors:Zhao, G, Zhou, X, Wang, L, Li, G, Lennarz, W, Schindelin, H.
Deposit date:2006-07-17
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4FBU
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BU of 4fbu by Molmil
Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Descriptor: CALCIUM ION, DNA polymerase IV, DNA primer, ...
Authors:Kirouac, K, Basu, A, Ling, H.
Deposit date:2012-05-23
Release date:2013-06-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural mechanism of replication stalling on a bulky amino-polycyclic aromatic hydrocarbon DNA adduct by a y family DNA polymerase.
J.Mol.Biol., 425, 2013

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