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PDB: 97 results

6HCT
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BU of 6hct by Molmil
Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn
Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*G)-3'), RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*GP*CP*AP*UP*GP*AP*AP*GP*C)-3'), ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-16
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA, 25, 2019
6FZ0
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BU of 6fz0 by Molmil
Crystal structure of the metY SAM V riboswitch
Descriptor: MAGNESIUM ION, S-ADENOSYLMETHIONINE, SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-03-13
Release date:2018-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structure and ligand binding of the SAM-V riboswitch.
Nucleic Acids Res., 46, 2018
6HC5
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BU of 6hc5 by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine
Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-14
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
1FZR
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BU of 1fzr by Molmil
CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I
Descriptor: ENDONUCLEASE I
Authors:Hadden, J.M, Convery, M.A, Declais, A.C, Lilley, D.M.J, Phillips, S.E.V.
Deposit date:2000-10-04
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I.
Nat.Struct.Biol., 8, 2001
4C4W
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BU of 4c4w by Molmil
Structure of a rare, non-standard sequence k-turn bound by L7Ae protein
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, DIHYDROGENPHOSPHATE ION, TSKT-23, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-09-09
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein
Nucleic Acids Res., 42, 2014
4BW0
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BU of 4bw0 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7, SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-06-29
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
4CS1
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BU of 4cs1 by Molmil
Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2014-03-03
Release date:2014-11-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function.
Nat.Commun., 5, 2014
4B5R
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BU of 4b5r by Molmil
SAM-I riboswitch bearing the H. marismortui K-t-7
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Daldrop, P, Lilley, D.M.J.
Deposit date:2012-08-07
Release date:2013-01-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The Plasticity of a Structural Motif in RNA: Structural Polymorphism of a Kink Turn as a Function of its Environment.
RNA, 19, 2013
4C40
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BU of 4c40 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3'
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-08-28
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
352D
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BU of 352d by Molmil
THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION
Descriptor: CALCIUM ION, DNA (5'-D(*TP*GP*GP*GP*GP*T)-3'), SODIUM ION
Authors:Phillips, K, Dauter, Z, Murchie, A.I.H, Lilley, D.M.J, Luisi, B.
Deposit date:1997-09-04
Release date:1997-11-10
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution.
J.Mol.Biol., 273, 1997
2XNW
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BU of 2xnw by Molmil
XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING
Descriptor: 3,6-diamino-1,5-dihydro[1,2,4]triazolo[4,3-b][1,2,4]triazol-4-ium, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Brenk, R.
Deposit date:2010-08-06
Release date:2011-04-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Novel ligands for a purine riboswitch discovered by RNA-ligand docking.
Chem. Biol., 18, 2011
2XNZ
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BU of 2xnz by Molmil
xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening
Descriptor: 6-METHYL-1,3,5-TRIAZINE-2,4-DIAMINE, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:2010-08-06
Release date:2011-04-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Novel ligands for a purine riboswitch discovered by RNA-ligand docking.
Chem. Biol., 18, 2011
2XO1
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BU of 2xo1 by Molmil
xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:2010-08-09
Release date:2011-04-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Novel ligands for a purine riboswitch discovered by RNA-ligand docking.
Chem. Biol., 18, 2011
6YMJ
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BU of 6ymj by Molmil
Crystal structure of the SAM-SAH riboswitch with adenosine.
Descriptor: 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE), ADENOSINE, Chains: A,C,F,I,M,O, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-08
Release date:2020-07-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 48, 2020
6YLB
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BU of 6ylb by Molmil
Crystal structure of the SAM-SAH riboswitch with SAM
Descriptor: Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P, S-ADENOSYLMETHIONINE
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-07
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 2020
6YML
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BU of 6yml by Molmil
Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH
Descriptor: 5'-S-(3-aminopropyl)-5'-thioadenosine, ADENOSINE MONOPHOSPHATE, Chains: A,C, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-08
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 48, 2020
6YMK
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BU of 6ymk by Molmil
Crystal structure of the SAM-SAH riboswitch with AMP
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-08
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 48, 2020
6YMM
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BU of 6ymm by Molmil
Crystal structure of the SAM-SAH riboswitch with SAM from space group P312
Descriptor: Chains: A, Chains: B,D, S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-08
Release date:2020-07-22
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 48, 2020
6YL5
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BU of 6yl5 by Molmil
Crystal structure of the SAM-SAH riboswitch with SAH
Descriptor: Chains: A,B,C,D,E,F,G,H,I,J,K,L, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-06
Release date:2020-07-22
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 2020
6YMI
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BU of 6ymi by Molmil
Crystal structure of the SAM-SAH riboswitch with AMP.
Descriptor: 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE), ADENOSINE MONOPHOSPHATE, Chains: A,C,F,I,M,O, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2020-04-08
Release date:2020-07-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res., 48, 2020
4OJI
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BU of 4oji by Molmil
Crystal Structure of Twister Ribozyme
Descriptor: MAGNESIUM ION, RNA (52-MER)
Authors:Liu, Y, Wilson, T.J, McPhee, S.A, Lilley, D.M.J.
Deposit date:2014-01-21
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and mechanistic investigation of the twister ribozyme.
Nat.Chem.Biol., 10, 2014
4R4P
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BU of 4r4p by Molmil
Crystal Structure of the VS ribozyme-A756G mutant
Descriptor: MAGNESIUM ION, VS ribozyme RNA
Authors:Piccirilli, J.A, Suslov, N.B, Dasgupta, S, Huang, H, Lilley, D.M.J, Rice, P.A.
Deposit date:2014-08-19
Release date:2015-09-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal structure of the Varkud satellite ribozyme.
Nat.Chem.Biol., 11, 2015
4R4V
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BU of 4r4v by Molmil
Crystal structure of the VS ribozyme - G638A mutant
Descriptor: MAGNESIUM ION, POTASSIUM ION, VS ribozyme RNA
Authors:Piccirilli, J.A, Suslov, N.B, Dasgupta, S, Huang, H, Lilley, D.M.J, Rice, P.A.
Deposit date:2014-08-19
Release date:2015-09-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal structure of the Varkud satellite ribozyme.
Nat.Chem.Biol., 11, 2015
6TFF
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BU of 6tff by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+)
Descriptor: BROMIDE ION, Chains: A, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
6TF0
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BU of 6tf0 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH)
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Chains: A, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-12
Release date:2020-09-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020

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