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PDB: 311 results

6A0M
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BU of 6a0m by Molmil
Mandelate oxidase mutant-Y128F with 2-Phenylacetic acid
Descriptor: 2-PHENYLACETIC ACID, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-05
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A0D
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BU of 6a0d by Molmil
The crystal structure of Mandelate oxidase mutant Y128F with (S)-2-phenylpropanoic acid
Descriptor: (2~{S})-2-phenylpropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-05
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A0O
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BU of 6a0o by Molmil
Mandelate oxidase mutant-Y128F with benzaldehyde
Descriptor: 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE, benzaldehyde
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-06
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A0Y
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BU of 6a0y by Molmil
Mandelate oxidase mutant-Y128F with Benzoic acid
Descriptor: 4-hydroxymandelate oxidase, BENZOIC ACID, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-06
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A1R
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BU of 6a1r by Molmil
Mandelate oxidase mutant-Y128F with the N5-phenylacetyl-FMN adduct
Descriptor: 1-deoxy-1-[7,8-dimethyl-2,4-dioxo-5-(phenylacetyl)-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase, MAGNESIUM ION
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-08
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A1H
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BU of 6a1h by Molmil
Mandelate oxidase mutant-Y128F with 5-deazariboflavin mononucleotide
Descriptor: 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-07
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
7CO5
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BU of 7co5 by Molmil
HtrA-type protease AlgW with decapeptide
Descriptor: AlgW protein, IMIDAZOLE, decapeptide SVRDELRWVF
Authors:Li, T, Song, Y.J, Bao, R.
Deposit date:2020-08-03
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.345 Å)
Cite:Molecular Basis of the Versatile Regulatory Mechanism of HtrA-Type Protease AlgW from Pseudomonas aeruginosa.
Mbio, 12, 2021
5XTX
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BU of 5xtx by Molmil
Crystal Structure of Transketolase in complex with TPP intermediate VII from Pichia Stipitis
Descriptor: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentakis(oxidanyl)-6-phosphonooxy-hexan-2-yl]-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Li, T.L, Hsu, N.S, Wang, Y.L.
Deposit date:2017-06-21
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.049 Å)
Cite:Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions.
Chembiochem, 19, 2018
6A1L
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BU of 6a1l by Molmil
Mandelate oxidase mutant-Y128F with 5-deazariboflavin mononucleotide and benzoic acid
Descriptor: 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase, BENZOIC ACID, ...
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-07
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A3D
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BU of 6a3d by Molmil
The crystal structure of Mandelate oxidase Y128F with 4-Br-2-hydroxy-methylphenylacetate
Descriptor: 1-deoxy-1-[(4aS)-4a-[(methoxycarbonyl)peroxy]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-15
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.923 Å)
Cite:Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
6A3T
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BU of 6a3t by Molmil
The crystal structure of Mandelate oxidase R163L with 2-hydroxy-phenylacetamide
Descriptor: 1-{5-[(1S)-2-amino-1-hydroxy-2-oxo-1-phenylethyl]-7,8-dimethyl-2,4-dioxo-1,2,3,4-tetrahydrobenzo[g]pteridine-5,10-diium-10-yl}-1-deoxy-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-16
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.511 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
8X3G
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BU of 8x3g by Molmil
Crystal structure of metformin hydrolase from Aminobacter
Descriptor: Agmatinase family protein, Arginase family protein, GLYCEROL, ...
Authors:Li, T, Zhou, N.Y.
Deposit date:2023-11-13
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Discovery of a Ni 2+ -dependent heterohexameric metformin hydrolase.
Nat Commun, 15, 2024
6A4H
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BU of 6a4h by Molmil
Mandelate oxidase mutant-Y128F with the peroxide FMN adduct
Descriptor: 4-hydroxymandelate oxidase, [(2~{R},3~{S},4~{S})-5-[(4~{a}~{S})-4~{a}-(dioxidanyl)-7,8-dimethyl-2,4-bis(oxidanylidene)-5~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-19
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
6A4G
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BU of 6a4g by Molmil
Mandelate oxidase mutant-Y128F with the monooxide FMN adduct
Descriptor: 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-19
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
2B5L
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BU of 2b5l by Molmil
Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein
Descriptor: Nonstructural protein V, ZINC ION, damage-specific DNA binding protein 1
Authors:Li, T, Chen, X, Garbutt, K.C, Zhou, P, Zheng, N.
Deposit date:2005-09-28
Release date:2006-02-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase.
Cell(Cambridge,Mass.), 124, 2006
2B5M
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BU of 2b5m by Molmil
Crystal Structure of DDB1
Descriptor: damage-specific DNA binding protein 1
Authors:Li, T, Chen, X, Garbutt, K.C, Zhou, P, Zheng, N.
Deposit date:2005-09-28
Release date:2006-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase.
Cell(Cambridge,Mass.), 124, 2006
2B5N
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BU of 2b5n by Molmil
Crystal Structure of the DDB1 BPB Domain
Descriptor: ISOPROPYL ALCOHOL, damage-specific DNA binding protein 1
Authors:Li, T, Chen, X, Garbutt, K.C, Zhou, P, Zheng, N.
Deposit date:2005-09-28
Release date:2006-02-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase.
Cell(Cambridge,Mass.), 124, 2006
5HYV
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BU of 5hyv by Molmil
Crystal Structure of Transketolase with ThDP from Pichia Stipitis
Descriptor: CALCIUM ION, PENTAETHYLENE GLYCOL, THIAMINE DIPHOSPHATE, ...
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-02-02
Release date:2017-02-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.031 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016
5I4I
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BU of 5i4i by Molmil
Crystal Structure of Transketolase from Pichia Stipitis
Descriptor: Transketolase
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-02-12
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016
5I5G
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BU of 5i5g by Molmil
Crystal Structure of Transketolase mutant-R525L from Pichia Stipitis
Descriptor: DI(HYDROXYETHYL)ETHER, PYROPHOSPHATE 2-, Transketolase
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-02-15
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016
5HJE
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BU of 5hje by Molmil
Crystal Structure of Transketolase complex with sedoheptulose-7-phoaphate from Pichia Stipitis
Descriptor: CALCIUM ION, D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE, THIAMINE DIPHOSPHATE, ...
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-01-13
Release date:2017-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016
7VZA
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BU of 7vza by Molmil
The crystal structure of Non-hydrolyzing UDPGlcNAc 2-epimerase in complex with UDP
Descriptor: Putative UDP-N-acetylglucosamine 2-epimerase, SODIUM ION, URIDINE-5'-DIPHOSPHATE
Authors:Li, T.L, Rattinam, R.
Deposit date:2021-11-15
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:KasQ an Epimerase Primes the Biosynthesis of Aminoglycoside Antibiotic Kasugamycin and KasF/H Acetyltransferases Inactivate Its Activity.
Biomedicines, 10, 2022
7VZ6
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BU of 7vz6 by Molmil
The crystal structure of Non-hydrolyzing UDPGlcNAc 2-epimerase in complex with UDP-glucose
Descriptor: Putative UDP-N-acetylglucosamine 2-epimerase, SODIUM ION, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Li, T.L, Rattinam, R.
Deposit date:2021-11-15
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:KasQ an Epimerase Primes the Biosynthesis of Aminoglycoside Antibiotic Kasugamycin and KasF/H Acetyltransferases Inactivate Its Activity.
Biomedicines, 10, 2022
5HGX
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BU of 5hgx by Molmil
Crystal Structure of Transketolase mutant - H261F from Pichia Stipitis
Descriptor: PENTAETHYLENE GLYCOL, Transketolase
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-01-09
Release date:2017-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016
5I51
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BU of 5i51 by Molmil
Crystal Structure of Transketolase mutant-R356L complex with fructose-6-phoaphate from Pichia Stipitis
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, FRUCTOSE -6-PHOSPHATE, ...
Authors:Li, T.L, Hsu, L.J, Hsu, N.S.
Deposit date:2016-02-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality
Protein Eng. Des. Sel., 2016

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