Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 463 results

2Y5N
DownloadVisualize
BU of 2y5n by Molmil
Structure of the mixed-function P450 MycG in complex with mycinamicin V in P21 space group
Descriptor: GLYCEROL, MAGNESIUM ION, MYCINAMICIN V, ...
Authors:Li, S, Kells, P.M, Sherman, D.H, Podust, L.M.
Deposit date:2011-01-15
Release date:2012-02-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Substrate Recognition by the Multifunctional Cytochrome P450 Mycg in Mycinamicin Hydroxylation and Epoxidation Reactions.
J.Biol.Chem., 287, 2012
2WHW
DownloadVisualize
BU of 2whw by Molmil
Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase
Descriptor: CYCLOTRIDECYL 3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE, CYTOCHROME P450 MONOOXYGENASE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Li, S, Chaulagain, M.R, Knauff, A.R, Podust, L.M, Montgomery, J, Sherman, D.H.
Deposit date:2009-05-07
Release date:2009-10-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Selective Oxidation of Carbolide C-H Bonds by an Engineered Macrolide P450 Mono-Oxygenase.
Proc.Natl.Acad.Sci.USA, 106, 2009
2WI9
DownloadVisualize
BU of 2wi9 by Molmil
Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase
Descriptor: CYCLODODECYL 3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE, CYTOCHROME P450 HYDROXYLASE PIKC, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Li, S, Chaulagain, M.R, Knauff, A.R, Podust, L.M, Montgomery, J, Sherman, D.H.
Deposit date:2009-05-08
Release date:2009-10-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selective Oxidation of Carbolide C-H Bonds by an Engineered Macrolide P450 Mono-Oxygenase.
Proc.Natl.Acad.Sci.USA, 106, 2009
6A0Z
DownloadVisualize
BU of 6a0z by Molmil
Crystal structure of broadly neutralizing antibody 13D4 bound to H5N1 influenza hemagglutinin, HA head region
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody 13D4, Fab Heavy Chain, ...
Authors:Li, S, Li, T.
Deposit date:2018-06-06
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.329 Å)
Cite:Structural Basis for the Broad, Antibody-Mediated Neutralization of H5N1 Influenza Virus.
J. Virol., 92, 2018
6A0X
DownloadVisualize
BU of 6a0x by Molmil
Crystal structure of broadly neutralizing antibody 13D4
Descriptor: Antibody 13D4, Fab Heavy Chain, Fab Light Chain
Authors:Li, S, Li, T.
Deposit date:2018-06-06
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for the Broad, Antibody-Mediated Neutralization of H5N1 Influenza Virus.
J. Virol., 92, 2018
1EGU
DownloadVisualize
BU of 1egu by Molmil
CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE AT 1.56 A RESOLUTION
Descriptor: HYALURONATE LYASE, SULFATE ION
Authors:Li, S, Kelly, S.J, Lamani, E, Ferraroni, M, Jedrzejas, M.J.
Deposit date:2000-02-16
Release date:2001-02-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural basis of hyaluronan degradation by Streptococcus pneumoniae hyaluronate lyase.
EMBO J., 19, 2000
7YG8
DownloadVisualize
BU of 7yg8 by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (387-MER), RNA (5'-R(*CP*CP*CP*UP*C)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
7YGA
DownloadVisualize
BU of 7yga by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (393-MER), RNA (5'-R(*CP*CP*CP*UP*CP*U)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
7YG9
DownloadVisualize
BU of 7yg9 by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (391-MER), RNA (5'-R(*CP*CP*CP*UP*CP*U)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
7YGB
DownloadVisualize
BU of 7ygb by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (393-MER), RNA (5'-R(*CP*CP*CP*UP*CP*UP*UP*AP*AP*CP*C)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
7YGC
DownloadVisualize
BU of 7ygc by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (393-MER), RNA (5'-R(*CP*CP*CP*UP*CP*UP*UP*AP*AP*CP*C)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
7YGD
DownloadVisualize
BU of 7ygd by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 6 undergoing the second-step self-splicing
Descriptor: MAGNESIUM ION, RNA (384-MER), RNA (5'-R(*CP*C)-3'), ...
Authors:Li, S, Michael, Z.P, Zhang, X, Greg, P, Zhang, K.
Deposit date:2022-07-11
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14, 2023
1C40
DownloadVisualize
BU of 1c40 by Molmil
BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)
Descriptor: PROTEIN (HEMOGLOBIN (ALPHA CHAIN)), PROTEIN (HEMOGLOBIN (BETA CHAIN)), PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, S, Liu, X, Jing, H, Hua, Z, Zhang, R, Lu, G.
Deposit date:1999-08-03
Release date:1999-08-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Avian haemoglobins and structural basis of high affinity for oxygen: structure of bar-headed goose aquomet haemoglobin.
Acta Crystallogr.,Sect.D, 57, 2001
7F1E
DownloadVisualize
BU of 7f1e by Molmil
Structure of METTL6 bound with SAM
Descriptor: S-ADENOSYLMETHIONINE, tRNA N(3)-methylcytidine methyltransferase METTL6
Authors:Li, S, Liao, S, Xu, C.
Deposit date:2021-06-09
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.589 Å)
Cite:Structural basis for METTL6-mediated m3C RNA methylation.
Biochem.Biophys.Res.Commun., 589, 2021
6LGN
DownloadVisualize
BU of 6lgn by Molmil
The atomic structure of varicella zoster virus C-capsid
Descriptor: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
Authors:Li, S, Zheng, Q.
Deposit date:2019-12-05
Release date:2020-07-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (5.3 Å)
Cite:Near-atomic cryo-electron microscopy structures of varicella-zoster virus capsids.
Nat Microbiol, 5, 2020
6LMS
DownloadVisualize
BU of 6lms by Molmil
Solution NMR structure cold shock domain of YB1 from Homo sapiens
Descriptor: Y-box-binding protein 1
Authors:Li, S, Zhang, J, Yang, Y.
Deposit date:2019-12-26
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.
Nucleic Acids Res., 48, 2020
7YUU
DownloadVisualize
BU of 7yuu by Molmil
MtaLon-ADP for the spiral oligomers of trimer
Descriptor: Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUV
DownloadVisualize
BU of 7yuv by Molmil
MtaLon-ADP for the spiral oligomers of tetramer
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUW
DownloadVisualize
BU of 7yuw by Molmil
MtaLon-ADP for the spiral oligomers of pentamer
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-18
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUM
DownloadVisualize
BU of 7yum by Molmil
MtaLon-Apo for the spiral oligomers of tetramer
Descriptor: Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUH
DownloadVisualize
BU of 7yuh by Molmil
MtaLon-Apo for the spiral oligomers of trimer
Descriptor: Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUP
DownloadVisualize
BU of 7yup by Molmil
MtaLon-Apo for the spiral oligomers of pentamer
Descriptor: Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUT
DownloadVisualize
BU of 7yut by Molmil
MtaLon-Apo for the spiral oligomers of hexamer
Descriptor: Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-17
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7YUX
DownloadVisualize
BU of 7yux by Molmil
MtaLon-ADP for the spiral oligomers of hexamer
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Ho, M, Wang, C, Zhang, K, Chang, C.I.
Deposit date:2022-08-18
Release date:2023-10-25
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
7FD4
DownloadVisualize
BU of 7fd4 by Molmil
A complete three-dimensional structure of the Lon protease translocating a protein substrate (conformation 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Alpha-S1-casein, Lon protease, ...
Authors:Li, S, Hsieh, K, Kuo, C, Lee, S, Pintilie, G, Zhang, K, Chang, C.
Deposit date:2021-07-16
Release date:2021-11-03
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Complete three-dimensional structures of the Lon protease translocating a protein substrate.
Sci Adv, 7, 2021

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon