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PDB: 379 results

2C70
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Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Descriptor: AMINE OXIDASE (FLAVIN-CONTAINING) B, FLAVIN-ADENINE DINUCLEOTIDE, P-NITRO-BENZYLAMINE
Authors:Li, M, Binda, C, Mattevi, A, Edmondson, D.E.
Deposit date:2005-11-17
Release date:2006-04-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Biochemistry, 45, 2006
8W2R
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HIV-1 P5-IN intasome core
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, DNA (5'-D(*AP*CP*TP*GP*CP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*CP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*GP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*GP*CP*A)-3'), ...
Authors:Li, M, Craigie, R.
Deposit date:2024-02-21
Release date:2024-04-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:HIV-1 Integrase Assembles Multiple Species of Stable Synaptic Complex Intasomes That Are Active for Concerted DNA Integration In vitro.
J.Mol.Biol., 436, 2024
8W34
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HIV-1 intasome core assembled with wild-type integrase, 1F
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, DNA (5'-D(*AP*CP*TP*GP*CP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*CP*CP*AP*C)-3'), DNA (5'-D(P*GP*TP*GP*GP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*GP*CP*A)-3'), ...
Authors:Li, M, Craigie, R.
Deposit date:2024-02-21
Release date:2024-04-17
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:HIV-1 Integrase Assembles Multiple Species of Stable Synaptic Complex Intasomes That Are Active for Concerted DNA Integration In vitro.
J.Mol.Biol., 436, 2024
8W09
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HIV-1 wild-type intasome core
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, Integrase, MAGNESIUM ION, ...
Authors:Li, M, Craigie, R.
Deposit date:2024-02-13
Release date:2024-04-17
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:HIV-1 Integrase Assembles Multiple Species of Stable Synaptic Complex Intasomes That Are Active for Concerted DNA Integration In vitro.
J.Mol.Biol., 436, 2024
2C72
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Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Descriptor: AMINE OXIDASE (FLAVIN-CONTAINING) B, FLAVIN-ADENINE DINUCLEOTIDE, N-PROPARGYL-1(S)-AMINOINDAN
Authors:Li, M, Binda, C, Mattevi, A, Edmondson, D.E.
Deposit date:2005-11-17
Release date:2006-04-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Biochemistry, 45, 2006
8HJF
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Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with M5, state 2
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, (2S,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2R,3S,4S,5R,6R)-6-[[(3S,8S,9R,10R,11R,13R,14S,17R)-17-[(2S,5R)-5-[(2S,3R,4S,5S,6R)-3-[(2R,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[[(2R,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-6-oxidanyl-heptan-2-yl]-4,4,9,13,14-pentamethyl-11-oxidanyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methoxy]oxane-3,4,5-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJP
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Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with UDP state 1
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, URIDINE-5'-DIPHOSPHATE, glycosyltranseferease
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJN
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Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with UPG
Descriptor: URIDINE-5'-DIPHOSPHATE-GLUCOSE, glycosyltransferase
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJO
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Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with UDP state 2
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, URIDINE-5'-DIPHOSPHATE, ...
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJG
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BU of 8hjg by Molmil
Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with M5, state 1
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, (2S,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2R,3S,4S,5R,6R)-6-[[(3S,8S,9R,10R,11R,13R,14S,17R)-17-[(2S,5R)-5-[(2S,3R,4S,5S,6R)-3-[(2R,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[[(2R,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-6-oxidanyl-heptan-2-yl]-4,4,9,13,14-pentamethyl-11-oxidanyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methoxy]oxane-3,4,5-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJQ
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BU of 8hjq by Molmil
Crystal structure of glycosyltransferase SgUGT94-289-3 in apo state
Descriptor: glycosyltranseferease
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJL
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BU of 8hjl by Molmil
Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with M3E
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(3S,8S,9R,10S,11S,13R,14S,17S)-17-[(2S,5R)-5-[(2S,3R,4S,5R,6S)-6-(hydroxymethyl)-3-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-6-oxidanyl-heptan-2-yl]-4,4,9,13,14-pentamethyl-11-oxidanyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]oxane-3,4,5-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJH
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Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with SIA, state 3
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, (2S,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2S,3S,4S,5R,6S)-5-[(2S,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(3R,6S)-6-[(3S,8S,9R,10R,11S,13R,14S,17R)-3-[(2S,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,4,9,13,14-pentamethyl-11-oxidanyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methyl-2-oxidanyl-heptan-3-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methoxy]oxane-3,4,5-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
8HJK
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BU of 8hjk by Molmil
Crystal structure of glycosyltransferase SgUGT94-289-3 in complex with SIA, state 1
Descriptor: (2S,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2S,3S,4S,5R,6S)-5-[(2S,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(3R,6S)-6-[(3S,8S,9R,10R,11S,13R,14S,17R)-3-[(2S,3R,4S,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,4,9,13,14-pentamethyl-11-oxidanyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methyl-2-oxidanyl-heptan-3-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methoxy]oxane-3,4,5-triol, URIDINE-5'-DIPHOSPHATE, glycosyltranseferease
Authors:Li, M, Zhang, S, Cui, S.
Deposit date:2022-11-23
Release date:2024-05-29
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Structural insights into the catalytic selectivity of glycosyltransferase SgUGT94-289-3 towards mogrosides.
Nat Commun, 15, 2024
2C75
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BU of 2c75 by Molmil
Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Descriptor: AMINE OXIDASE (FLAVIN-CONTAINING) B, FLAVIN-ADENINE DINUCLEOTIDE, N-PROPARGYL-1(S)-AMINOINDAN
Authors:Li, M, Binda, C, Mattevi, A, Edmondson, D.E.
Deposit date:2005-11-17
Release date:2006-04-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Biochemistry, 45, 2006
2H2K
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BU of 2h2k by Molmil
Crystal Structure Analysis of Human S100A13
Descriptor: CALCIUM ION, Protein S100-A13
Authors:Li, M, Zhang, P.F, Zhang, J.P, Chang, W.R.
Deposit date:2006-05-19
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure study on human S100A13 at 2.0 A resolution
Biochem.Biophys.Res.Commun., 356, 2007
2JV5
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BU of 2jv5 by Molmil
Nogo54
Descriptor: Reticulon-4
Authors:Li, M, Song, J.
Deposit date:2007-09-12
Release date:2008-09-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure-based design of buffer-soluble Nogo54: a molecular mimic of Nogo-66 to inhibit CNS neuron regeneration
To be Published
2ANE
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BU of 2ane by Molmil
Crystal structure of N-terminal domain of E.Coli Lon Protease
Descriptor: ATP-dependent protease La
Authors:Li, M, Rasulova, F, Melnikov, E.E, Rotanova, T.V, Gustchina, A, Maurizi, M.R, Wlodawer, A.
Deposit date:2005-08-11
Release date:2005-11-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of the N-terminal domain of E. coli Lon protease.
Protein Sci., 14, 2005
4EXH
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BU of 4exh by Molmil
The crystal structure of xmrv protease complexed with acetyl-pepstatin
Descriptor: ACETYL-PEPSTATIN, FORMIC ACID, Putative gag-pro-pol polyprotein
Authors:Li, M, Wlodawer, A.
Deposit date:2012-04-30
Release date:2012-08-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibition of XMRV and HIV-1 proteases by pepstatin A and acetyl-pepstatin.
Febs J., 279, 2012
3SLZ
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BU of 3slz by Molmil
The crystal structure of XMRV protease complexed with TL-3
Descriptor: FORMIC ACID, SODIUM ION, benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate, ...
Authors:Li, M, Gustchina, A, Wlodawer, A.
Deposit date:2011-06-27
Release date:2011-10-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and biochemical characterization of the inhibitor complexes of xenotropic murine leukemia virus-related virus protease.
Febs J., 278, 2011
3SM2
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BU of 3sm2 by Molmil
The crystal structure of XMRV protease complexed with Amprenavir
Descriptor: gag-pro-pol polyprotein, {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
Authors:Li, M, Gustchina, A, Wlodawer, A.
Deposit date:2011-06-27
Release date:2011-10-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and biochemical characterization of the inhibitor complexes of xenotropic murine leukemia virus-related virus protease.
Febs J., 278, 2011
7VUL
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BU of 7vul by Molmil
Structure of Klebsiella Phage P560 depolymerase
Descriptor: Non-contractile tail fiber protein, SULFATE ION
Authors:Li, M, Chen, R, Zhang, S, Zhang, W.
Deposit date:2021-11-02
Release date:2022-11-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structure of Klebsiella Phage P560 depolymerase
To Be Published
4KHT
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BU of 4kht by Molmil
Triple helix bundle of GP41 complexed with fab 8066
Descriptor: 8066 heavy chain, 8066 light chain, Gp41 helix
Authors:Li, M, Gustchina, A, Wlodawer, A.
Deposit date:2013-05-01
Release date:2014-03-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.817 Å)
Cite:Complexes of neutralizing and non-neutralizing affinity matured Fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41.
Plos One, 8, 2013
4KHX
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BU of 4khx by Molmil
Crystal structure of gp41 helix complexed with antibody 8062
Descriptor: 8062 heavy chain, 8062 light chain, gp41 helix
Authors:Li, M, Gustchina, A, Wlodawer, A.
Deposit date:2013-05-01
Release date:2014-03-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.921 Å)
Cite:Complexes of neutralizing and non-neutralizing affinity matured Fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41.
Plos One, 8, 2013
6HB0
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BU of 6hb0 by Molmil
Crystal structure of MSMEG_1712 from Mycobacterium smegmatis
Descriptor: ABC transporter periplasmic-binding protein YtfQ, ZINC ION
Authors:Li, M, Mueller, C, Einsle, O, Jessen-Trefzer, C.
Deposit date:2018-08-09
Release date:2019-05-01
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol.
Cell Chem Biol, 26, 2019

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