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PDB: 825 results

7WKY
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BU of 7wky by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y13153
Descriptor: 2-(2-cyclopentyl-1~{H}-imidazol-5-yl)-7-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-5-methyl-furo[3,2-c]pyridin-4-one, Bromodomain-containing protein 4, GLYCEROL
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-12
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WMU
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BU of 7wmu by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13146
Descriptor: 1,2-ETHANEDIOL, Isoform 4 of Bromodomain-containing protein 2, ~{N}-[4-[2,4-bis(fluoranyl)phenoxy]-3-[2-(2-cyclobutyl-1~{H}-imidazol-5-yl)-5-methyl-4-oxidanylidene-furo[3,2-c]pyridin-7-yl]phenyl]ethanesulfonamide
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-17
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WNI
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BU of 7wni by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13158
Descriptor: 1,2-ETHANEDIOL, 7-[2-[2,4-bis(fluoranyl)phenoxy]-5-(2-oxidanylpropan-2-yl)phenyl]-2-[4-(2-hydroxyethyloxy)-3,5-dimethyl-phenyl]-5-methyl-furo[3,2-c]pyridin-4-one, DI(HYDROXYETHYL)ETHER, ...
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-18
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WN5
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BU of 7wn5 by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13142
Descriptor: 1,2-ETHANEDIOL, Isoform 4 of Bromodomain-containing protein 2, POTASSIUM ION, ...
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-17
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WLN
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BU of 7wln by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13153
Descriptor: 2-(2-cyclopentyl-1~{H}-imidazol-5-yl)-7-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-5-methyl-furo[3,2-c]pyridin-4-one, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-13
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WNA
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BU of 7wna by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13120
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Isoform 4 of Bromodomain-containing protein 2, ...
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-17
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
7WMQ
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BU of 7wmq by Molmil
Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13157
Descriptor: 2-(2-cyclobutyl-1~{H}-imidazol-5-yl)-7-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-5-methyl-furo[3,2-c]pyridin-4-one, FORMIC ACID, GLYCEROL, ...
Authors:Li, J, Zhang, C, Xu, H, Zhuang, X, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-01-16
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors.
J.Med.Chem., 65, 2022
6BLK
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BU of 6blk by Molmil
Mycobacterial sensor histidine kinase MprB
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Signal transduction histidine-protein kinase/phosphatase mprB
Authors:Li, J, Korotkova, N, Korotkov, K.V.
Deposit date:2017-11-10
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.552 Å)
Cite:Mycobacterial sensor histidine kinase MprB
to be published
6CYZ
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BU of 6cyz by Molmil
Mycobacterial homoserine kinase ThrB in complex with AMPPNP
Descriptor: CHLORIDE ION, Homoserine kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Li, J, Korotkov, K.V.
Deposit date:2018-04-07
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Mycobacterial homoserine kinase ThrB
To Be Published
5DTH
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BU of 5dth by Molmil
Crystal structure of MUPP1 PDZ8 domain from rattus norvegicus
Descriptor: Multiple PDZ domain protein
Authors:Li, J, Lv, Y, Zhu, H, Liu, W.
Deposit date:2015-09-18
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical characteristics of MUPP1 PDZ8 domain from rattus norregicus
To Be Published
8FLK
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BU of 8flk by Molmil
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Descriptor: 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, cGAMP
Authors:Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
Deposit date:2022-12-21
Release date:2023-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
8FLM
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BU of 8flm by Molmil
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Descriptor: 1-[(2-chloro-6-fluorophenyl)methyl]-3,3-dimethyl-2-oxo-N-[(2,4,6-trifluorophenyl)methyl]-2,3-dihydro-1H-indole-6-carboxamide, 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, ...
Authors:Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
Deposit date:2022-12-21
Release date:2023-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
5F3X
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BU of 5f3x by Molmil
Crystal structure of Harmonin NPDZ1 in complex with ANKS4B SAM-PBM
Descriptor: Ankyrin repeat and SAM domain-containing protein 4B, CHLORIDE ION, Harmonin
Authors:Li, J, He, Y, Lu, Q, Zhang, M.
Deposit date:2015-12-03
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.649 Å)
Cite:Mechanistic Basis of Organization of the Harmonin/USH1C-Mediated Brush Border Microvilli Tip-Link Complex
Dev.Cell, 36, 2016
5F3Y
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BU of 5f3y by Molmil
Crystal Structure of Myo7b N-MyTH4-FERM-SH3 in complex with Anks4b CEN
Descriptor: Ankyrin repeat and SAM domain-containing protein 4B, Unconventional myosin-VIIb
Authors:Li, J, He, Y, Lu, Q, Zhang, M.
Deposit date:2015-12-03
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.409 Å)
Cite:Mechanistic Basis of Organization of the Harmonin/USH1C-Mediated Brush Border Microvilli Tip-Link Complex
Dev.Cell, 36, 2016
7DVM
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BU of 7dvm by Molmil
DgkA structure in E.coli lipid bilayer
Descriptor: Diacylglycerol kinase
Authors:Li, J, Yang, J.
Deposit date:2021-01-13
Release date:2022-04-13
Last modified:2023-09-27
Method:SOLID-STATE NMR
Cite:Structure of membrane diacylglycerol kinase in lipid bilayers.
Commun Biol, 4, 2021
7BV3
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BU of 7bv3 by Molmil
Crystal structure of a ugt transferase from Siraitia grosvenorii in complex with UDP
Descriptor: Glycosyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Li, J, Shan, N, Yang, J.G, Liu, W.D, Sun, Y.X.
Deposit date:2020-04-09
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Near-perfect control of the regioselective glucosylation enabled by rational design of glycosyltransferases
Green Synth Catal, 2021
6JLE
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BU of 6jle by Molmil
Crystal structure of MORN4/Myo3a complex
Descriptor: CITRIC ACID, GLYCEROL, MORN repeat-containing protein 4, ...
Authors:Li, J, Liu, H, Raval, M.H, Wan, J, Yengo, C.M, Liu, W, Zhang, M.
Deposit date:2019-03-05
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of the MORN4/Myo3a Tail Complex Reveals MORN Repeats as Protein Binding Modules.
Structure, 27, 2019
8HHE
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BU of 8hhe by Molmil
Crystal structure of Cry5B from Bacillus thuringiensis at 4.5 A resolution
Descriptor: Crystaline entomocidal protoxin
Authors:Li, J, Chan, M.K.
Deposit date:2022-11-16
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Insights from the Structure of an Active Form of Bacillus thuringiensis Cry5B.
Toxins, 14, 2022
5X3V
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BU of 5x3v by Molmil
Structure of human SHMT2 protein mutant
Descriptor: SULFATE ION, Serine hydroxymethyltransferase, mitochondrial
Authors:Li, J, Sheng, J.
Deposit date:2017-02-09
Release date:2018-02-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of human SHMT2 protein mutant
To Be Published
7FIX
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BU of 7fix by Molmil
Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, CALCIUM ION, ...
Authors:Li, J, Kurisu, G.
Deposit date:2021-08-01
Release date:2022-09-21
Last modified:2022-09-28
Method:ELECTRON MICROSCOPY (1.97 Å)
Cite:Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97 angstrom resolution.
Commun Biol, 5, 2022
7WNT
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BU of 7wnt by Molmil
RNase J from Mycobacterium tuberculosis
Descriptor: Ribonuclease J, ZINC ION
Authors:Li, J, Bao, L, Hu, J, Zhan, B, Li, Z.
Deposit date:2022-01-19
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural ans functional study of RNase J from Mycobacterium tuberculosis
To Be Published
7WNU
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BU of 7wnu by Molmil
Mycobacterium tuberculosis Rnase J complex with 7nt RNA
Descriptor: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3'), Ribonuclease J, ZINC ION
Authors:Li, J, Hu, J, Bao, L, Zhan, B, Li, Z.
Deposit date:2022-01-19
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural ans functional study of RNase J from Mycobacterium tuberculosis
To Be Published
5ZCK
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BU of 5zck by Molmil
Structure of the RIP3 core region
Descriptor: SODIUM ION, peptide from Receptor-interacting serine/threonine-protein kinase 3
Authors:Li, J, Wu, H.
Deposit date:2018-02-18
Release date:2018-04-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.271 Å)
Cite:The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex.
Cell, 173, 2018
5ZVD
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BU of 5zvd by Molmil
The crystal structure of NSun6 from Pyrococcus horikoshii
Descriptor: 389aa long hypothetical nucleolar protein
Authors:Li, J, Liu, R.J, Wang, E.D.
Deposit date:2018-05-10
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Archaeal NSUN6 catalyzes m5C72 modification on a wide-range of specific tRNAs.
Nucleic Acids Res., 47, 2019
7F02
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BU of 7f02 by Molmil
Cytochrome c-type biogenesis protein CcmABCD from E. coli
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, ...
Authors:Li, J, Zheng, W, Gu, M, Zhang, K, Zhu, J.P.
Deposit date:2021-06-03
Release date:2022-11-09
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Structures of the CcmABCD heme release complex at multiple states.
Nat Commun, 13, 2022

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