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PDB: 321 件
8IY7
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BU of 8iy7 by Molmil
Cryo-EM structure of DIP-2I8I fibril polymorph1
分子名称: GLY-PHI-GLY-ASN-GLY-ASN-GLY-PHI-GLY
著者Li, D.N, Ma, Y.Y, Li, D, Dai, B, Liu, C.
登録日2023-04-04
公開日2024-04-10
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Cryo-EM structure of DIP-2I8I fibril polymorph1
To Be Published
8IZZ
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BU of 8izz by Molmil
Cryo-EM structure of DIP-2I8I polymorph 2
分子名称: GLY-PHI-GLY-ASN-GLY-ASN-GLY-PHI-GLY
著者Li, D.N, Ma, Y.Y, Li, D, Dai, B, Liu, C.
登録日2023-04-09
公開日2024-04-10
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Cryo-EM structure of DIP-2I8I fibril polymorph 2
To Be Published
8IKB
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BU of 8ikb by Molmil
Cryo-EM structure of hnRAC1-2I fibril.
分子名称: GLY-PHI-GLY-GLY-ASN-ASP-ASN-PHE-GLY
著者Li, D.N, Ma, Y.Y, Li, D, Dai, B, Liu, C.
登録日2023-02-28
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Cryo-EM structure of hnRAC1-2I fibril.
To Be Published
3RNY
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BU of 3rny by Molmil
Crystal structure of human RSK1 C-terminal kinase domain
分子名称: Ribosomal protein S6 kinase alpha-1, SODIUM ION
著者Li, D, Fu, T.-M, Nan, J, Su, X.-D.
登録日2011-04-24
公開日2012-04-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for the autoinhibition of the C-terminal kinase domain of human RSK1.
Acta Crystallogr.,Sect.D, 68, 2012
3AQT
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BU of 3aqt by Molmil
CRYSTAL STRUCTURE OF RolR (NCGL1110) complex WITH ligand RESORCINOL
分子名称: Bacterial regulatory proteins, tetR family, RESORCINOL
著者Li, D.F, Zhang, N, Hou, Y.J, Liu, S.J, Wang, D.C.
登録日2010-11-18
公開日2011-07-06
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of the transcriptional repressor RolR reveals a novel recognition mechanism between inducer and regulator.
Plos One, 6, 2011
2D4G
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BU of 2d4g by Molmil
Structure of YjcG protein, a putative 2'-5' RNA ligase from Bacillus subtilis
分子名称: hypothetical protein BSU11850
著者Li, D, Liang, Y.H, Su, X.D.
登録日2005-10-19
公開日2006-10-17
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins, 72, 2008
1N25
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BU of 1n25 by Molmil
Crystal structure of the SV40 Large T antigen helicase domain
分子名称: Large T Antigen, ZINC ION
著者Li, D, Zhao, R, Lilyestrom, W, Gai, D, Zhang, R, DeCaprio, J.A, Fanning, E, Jochimiak, A, Szakonyi, G, Chen, X.S.
登録日2002-10-21
公開日2003-06-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen
Nature, 423, 2003
5WS2
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BU of 5ws2 by Molmil
Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA
分子名称: RNA (5'-R(P*AP*AP*AP*AP*A)-3'), Ribonuclease J, SULFATE ION, ...
著者Li, D.F, Feng, N.
登録日2016-12-05
公開日2017-12-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.398 Å)
主引用文献New molecular insights into an archaeal RNase J reveal a conserved processive exoribonucleolysis mechanism of the RNase J family
Mol. Microbiol., 106, 2017
5HAB
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BU of 5hab by Molmil
Crystal structure of mpy-RNase J (mutant H84A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA
分子名称: RNA (5'-R(P*AP*AP*AP*AP*A)-3'), Ribonuclease J, SULFATE ION
著者Li, D.F, Feng, N.
登録日2015-12-30
公開日2017-01-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1
To Be Published
8J65
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BU of 8j65 by Molmil
the structure of L,D-transpeptidase LdtMt2 complex with citrate
分子名称: CITRIC ACID, L,D-transpeptidase 2
著者Li, D.F, Qin, Y.L.
登録日2023-04-24
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Citrate interacts with L,D-transpeptidase and hinders the growth of Mycobacterium
To Be Published
4D2E
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BU of 4d2e by Molmil
Crystal structure of an integral membrane kinase - v2.3
分子名称: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, CITRATE ANION, ...
著者Li, D, Boland, C, Caffrey, M.
登録日2014-05-09
公開日2014-07-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Cell-Free Expression and in Meso Crystallisation of an Integral Membrane Kinase for Structure Determination.
Cell.Mol.Life Sci., 71, 2014
3VSG
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BU of 3vsg by Molmil
Crystal structure of iron free 1,6-APD, 2-Animophenol-1,6-Dioxygenase
分子名称: 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit, 2-amino-5-chlorophenol 1,6-dioxygenase beta subunit
著者Li, D.F, Hou, Y.J, Hu, Y, Wang, D.C, Liu, W.
登録日2012-04-25
公開日2013-01-16
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor
Acta Crystallogr.,Sect.D, 69, 2013
3ZE3
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BU of 3ze3 by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - delta7
分子名称: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, ACETATE ION, ...
著者Li, D, Pye, V.E, Lyons, J.A, Vogeley, L, Aragao, D, Caffrey, M.
登録日2012-12-03
公開日2013-05-22
最終更新日2023-03-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal Structure of the Integral Membrane Diacylglycerol Kinase.
Nature, 497, 2013
4BRR
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BU of 4brr by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - delta 7.79
分子名称: (2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate, ACETATE ION, CITRATE ANION, ...
著者Li, D, Howe, N, Caffrey, M.
登録日2013-06-05
公開日2014-06-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Crystal Structure of an Integral Membrane Enzyme Determined by X-Ray Free Electron Laser Femtocrystallography
To be Published
4BRB
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BU of 4brb by Molmil
Crystal structure of the integral membrane enzyme DgkA-ref, delta 7
分子名称: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, ACETATE ION, CITRATE ANION, ...
著者Li, D, Caffrey, M.
登録日2013-06-04
公開日2014-06-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Renaturing Membrane Proteins in the Lipid Cubic Phase, a Nanoporous Membrane Mimetic.
Sci.Rep., 4, 2014
3VSI
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BU of 3vsi by Molmil
Crystal structure of native 1,6-APD (2-Animophenol-1,6-dioxygenase) complex with 4-Nitrocatechol
分子名称: 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit, 2-amino-5-chlorophenol 1,6-dioxygenase beta subunit, 4-NITROCATECHOL, ...
著者Li, D.F, Hou, Y.J, Hu, Y, Wang, D.C, Liu, W.
登録日2012-04-25
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor
Acta Crystallogr.,Sect.D, 69, 2013
3VSJ
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BU of 3vsj by Molmil
Crystal structure of 1,6-APD (2-ANIMOPHENOL-1,6-DIOXYGENASE) complexed with intermediate products
分子名称: (2Z,4Z)-2-imino-6-oxohex-4-enoic acid, (3E)-3-iminooxepin-2(3H)-one, 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit, ...
著者Li, D.F, Hou, Y.J, Hu, Y, Wang, D.C, Liu, W.
登録日2012-04-25
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor
Acta Crystallogr.,Sect.D, 69, 2013
3VSH
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BU of 3vsh by Molmil
Crystal structure of native 1,6-APD (with Iron), 2-Animophenol-1,6-Dioxygenase
分子名称: 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit, 2-amino-5-chlorophenol 1,6-dioxygenase beta subunit, FE (II) ION
著者Li, D.F, Hou, Y.J, Hu, Y, Wang, D.C, Liu, W.
登録日2012-04-25
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor
Acta Crystallogr.,Sect.D, 69, 2013
5IMU
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BU of 5imu by Molmil
A fragment of conserved hypothetical protein Rv3899c (residues 184-410) from Mycobacterium tuberculosis
分子名称: POTASSIUM ION, Tat (Twin-arginine translocation) pathway signal sequence containing protein
著者Li, D.F, Gao, Y.R, Liu, Y.Y, Bi, L.J.
登録日2016-03-07
公開日2017-03-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of Rv3899c(184-410), a hypothetical protein from Mycobacterium tuberculosis
Acta Crystallogr F Struct Biol Commun, 72, 2016
4BPM
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BU of 4bpm by Molmil
Crystal structure of a human integral membrane enzyme
分子名称: 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide, GLUTATHIONE, PROSTAGLANDIN E SYNTHASE, ...
著者Li, D, Wang, M, Olieric, V, Caffrey, M.
登録日2013-05-27
公開日2014-04-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Crystallizing Membrane Proteins in the Lipidic Mesophase. Experience with Human Prostaglandin E2 Synthase 1 and an Evolving Strategy.
Cryst.Growth Des., 14, 2014
3WE5
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BU of 3we5 by Molmil
Crystal structure of ubiquitin conjugating enzyme E2 UbcA1 from Agrocybe aegerita
分子名称: ACETIC ACID, GLYCEROL, Ubiquitin conjugating enzyme
著者Li, D.F, Feng, L, Wang, D.C, Liu, W.
登録日2013-07-01
公開日2014-07-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ubiquitin conjugating enzyme E2 UbcA1 from Agrocybe aegerita
To be Published
4BPD
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BU of 4bpd by Molmil
Structure determination of an integral membrane kinase
分子名称: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, DIACYLGLYCEROL KINASE, ZINC ION
著者Li, D, Boland, C, Caffrey, M.
登録日2013-05-24
公開日2014-05-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Cell-Free Expression and in Meso Crystallisation of an Integral Membrane Kinase for Structure Determination.
Cell.Mol.Life Sci., 71, 2014
4CJZ
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BU of 4cjz by Molmil
Crystal structure of the integral membrane diacylglycerol kinase DgkA- 9.9, delta 4
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DIACYLGLYCEROL KINASE
著者Li, D, Aragao, D, Pye, V.E, Caffrey, M.
登録日2013-12-23
公開日2015-01-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Crystal Structure of the Integral Membrane Diacylglycerol Kinase with Zn-Amppcp Bound and its Catalytic Mechanism
To be Published
4CK0
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BU of 4ck0 by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - form 2
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DIACYLGLYCEROL KINASE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Li, D, Lyons, J.A, Vogeley, L, Aragao, D, Caffrey, M.
登録日2013-12-23
公開日2015-01-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.924 Å)
主引用文献Crystal Structure of the Integral Membrane Diacylglycerol Kinase with Zn-Amppcp Bound and its Catalytic Mechanism
To be Published
2DS2
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BU of 2ds2 by Molmil
Crystal structure of mabinlin II
分子名称: ACETIC ACID, Sweet protein mabinlin-2 chain A, Sweet protein mabinlin-2 chain B
著者Li, D.F, Zhu, D.Y, Wang, D.C.
登録日2006-06-19
公開日2007-06-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of Mabinlin II: a novel structural type of sweet proteins and the main structural basis for its sweetness.
J.Struct.Biol., 162, 2008

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