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PDB: 17 results

2G1G
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BU of 2g1g by Molmil
Solution structure of the anticodon loop of S. Pombe tRNAi including the naturally occurring N6-threonyl adenine
Descriptor: 5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A)P*AP*CP*CP*CP*GP*U)-3'
Authors:Lescrinier, E.
Deposit date:2006-02-14
Release date:2006-06-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif
Nucleic Acids Res., 34, 2006
1EC4
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BU of 1ec4 by Molmil
SOLUTION STRUCTURE OF A HEXITOL NUCLEIC ACID DUPLEX WITH FOUR CONSECUTIVE T:T BASE PAIRS
Descriptor: HEXITOL DODECANUCLEOTIDE
Authors:Lescrinier, E, Esnouf, R.M, Schraml, J, Busson, R, Herdewijn, P.
Deposit date:2000-01-25
Release date:2003-04-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a HNA-RNA hybrid
Chem.Biol., 7, 2000
2KPC
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Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*AP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')
Authors:Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P.
Deposit date:2009-10-12
Release date:2010-06-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses.
Chembiochem, 11, 2010
2KPD
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Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV-mutant
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*UP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')
Authors:Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P.
Deposit date:2009-10-12
Release date:2010-06-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses.
Chembiochem, 11, 2010
2MN0
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BU of 2mn0 by Molmil
D loop of tRNA(Met)
Descriptor: 5'-R(*GP*GP*AP*GP*AP*GP*(H2U)P*GP*GP*AP*AP*CP*UP*CP*C)-3'
Authors:Lescrinier, E, Dyubankova, N, Herdewijn, P.
Deposit date:2014-03-25
Release date:2015-04-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Contribution of dihydrouridine in folding of the D-arm in tRNA.
Org.Biomol.Chem., 13, 2015
2M4W
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BU of 2m4w by Molmil
single G-bulge in a conserved regulatory region of the HEV genome
Descriptor: RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')
Authors:Lescrinier, E.
Deposit date:2013-02-11
Release date:2014-03-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Binding of a naphtyridine analogue to the single G-bulge in a conserved regulatory region of the HEV genome
To be Published
9F3D
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BU of 9f3d by Molmil
Single acyclic phosphonate nucleotide (S)-ZNA modification on DNA hairpin
Descriptor: C modifed (S)-ZNA
Authors:Li, X, Groaz, E, Herdewijn, P, Lescrinier, E.
Deposit date:2024-04-25
Release date:2024-06-05
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Impact of Single Acyclic Phosphonate Nucleotide (ZNA) Modifications on DNA Duplex Stability.
Chemistry, 30, 2024
9F3E
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BU of 9f3e by Molmil
Single acyclic phosphonate nucleotide (R)-ZNA modification on DNA duplex
Descriptor: C modified (R)-ZNA
Authors:Li, X, Groaz, E, Herdewyn, P, Lescrinier, E.
Deposit date:2024-04-25
Release date:2024-06-05
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Impact of Single Acyclic Phosphonate Nucleotide (ZNA) Modifications on DNA Duplex Stability.
Chemistry, 30, 2024
1QXB
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BU of 1qxb by Molmil
NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-OH of T8 and the 5'-phosphate group of C9
Descriptor: 5'-d(CpGpCpGpApApTpTpCpGpCpG)-3', beta-D-ribofuranose
Authors:Nauwelaerts, K, Vastmans, K, Froeyen, M, Kempeneers, V, Rozenski, J, Rosemeyer, H, Van Aerschot, A, Busson, R, Efimtseva, E, Mikhailov, S, Lescrinier, E, Herdewijn, P.
Deposit date:2003-09-05
Release date:2004-02-03
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Cleavage of DNA without loss of genetic information by incorporation of a disaccharide nucleoside.
Nucleic Acids Res., 31, 2003
2LER
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BU of 2ler by Molmil
Conotoxin pc16a
Descriptor: Conotoxin pc16a
Authors:Dyubankova, N, Lescrinier, E, Van Der Haegen, A, Peigneur, S, Tytgat, J.
Deposit date:2011-06-22
Release date:2012-04-11
Last modified:2012-04-18
Method:SOLUTION NMR
Cite:Pc16a, the first characterized peptide from Conus pictus venom, shows a novel disulfide connectivity.
Peptides, 34, 2012
1U01
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BU of 1u01 by Molmil
High resolution NMR structure of 5-d(GCGT*GCG)-3/5-d(CGCACGC)-3 (T*represents a cyclohexenyl nucleotide)
Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'
Authors:Nauwelaerts, K, Lescrinier, E, Sclep, G, Herdewijn, P.
Deposit date:2004-07-12
Release date:2005-05-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Cyclohexenyl nucleic acids: conformationally flexible oligonucleotides.
Nucleic Acids Res., 33, 2005
7BFX
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deoxyxylose nucleic acid hairpin
Descriptor: dXyNA (5'-D(*(XA)P*(XG)P*(XC)P*(XA)P*(XA)P*(XT)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XG)P*(XG)P*(XA)P*(XT)P*(XT)P*(XG)P*(XC)P*T)-3')
Authors:Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
Deposit date:2021-01-05
Release date:2021-01-27
Last modified:2024-01-31
Method:SOLUTION NMR
Cite:Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
7BFS
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BU of 7bfs by Molmil
deoxyxylose nucleic acid hairpin
Descriptor: DNA (5'-D(*AP*GP*CP*AP*AP*TP*CP*CP*(XC)P*(XC)P*(XC)P*(XC)P*GP*GP*AP*TP*TP*GP*CP*T)-3')
Authors:Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
Deposit date:2021-01-04
Release date:2021-01-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
2MSF
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BU of 2msf by Molmil
NMR SOLUTION STRUCTURE OF SCORPION VENOM TOXIN Ts11 (TsPep1) FROM Tityus serrulatus
Descriptor: Peptide TsPep1
Authors:Maiti, M, Lescrinier, E, Herdewijn, P, Cremonez, C.M, Peigneur, S, Cassoli, J.S, Dutra, A.A.A, Waelkens, E, Pimenta, A.M.C, De Lima, M.H, Tytgat, J, Arantes, E.C.
Deposit date:2014-08-01
Release date:2015-08-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and Functional Elucidation of Peptide Ts11 Shows Evidence of a Novel Subfamily of Scorpion Venom Toxins.
Toxins (Basel), 8, 2016
2MD6
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BU of 2md6 by Molmil
NMR SOLUTION STRUCTURE OF ALPHA CONOTOXIN LO1A FROM Conus longurionis
Descriptor: ALPHA CONOTOXIN LO1A
Authors:Maiti, M, Lescrinier, E, Herdewijn, P, Lebbe, E.K.M, Peigneur, S, D'Souza, L, Tytgat, J.
Deposit date:2013-09-01
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure-Function Elucidation of a New alpha-Conotoxin, Lo1a, from Conus longurionis.
J.Biol.Chem., 289, 2014
2LU6
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BU of 2lu6 by Molmil
NMR solution structure of Midi peptide designed based on m-conotoxins
Descriptor: Midi peptide designed based on m-conotoxins
Authors:Dyubankova, N, Lescrinier, E, Stevens, M, Tytgat, J, Herdewijn, P, Peigneur, S.
Deposit date:2012-06-08
Release date:2012-06-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Design of bioactive peptides from naturally occurring mu-conotoxin structures.
J.Biol.Chem., 287, 2012
2N4J
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Solution structure of a self complementary Xylonucleic Acid duplex
Descriptor: XNA (5'-R(*(8XG)P*(8XU)P*(8XG)P*(8XU)P*(8XA)P*(8XC)P*(8XA)P*(8XC))-3')
Authors:Maiti, M, Lescrinier, E, Herdewijn, P.
Deposit date:2015-06-19
Release date:2015-07-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Xylonucleic acid: synthesis, structure, and orthogonal pairing properties.
Nucleic Acids Res., 43, 2015

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