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PDB: 27 results

1LDZ
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SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, 25 STRUCTURES
Descriptor: LEAD-DEPENDENT RIBOZYME
Authors:Hoogstraten, C.G, Legault, P, Pardi, A.
Deposit date:1998-08-18
Release date:1998-11-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis.
J.Mol.Biol., 284, 1998
3IVN
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BU of 3ivn by Molmil
Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon
Descriptor: A-riboswitch, BROMIDE ION, MAGNESIUM ION
Authors:Delfosse, V, Dagenais, P, Chausse, D, Di Tomasso, G, Legault, P.
Deposit date:2009-09-01
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Riboswitch structure: an internal residue mimicking the purine ligand.
Nucleic Acids Res., 38, 2010
1BNB
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BU of 1bnb by Molmil
SOLUTION STRUCTURE OF BOVINE NEUTROPHIL BETA-DEFENSIN 12: THE PEPTIDE FOLD OF THE BETA-DEFENSINS IS IDENTICAL TO THAT OF THE CLASSICAL DEFENSINS
Descriptor: BOVINE NEUTROPHIL BETA-DEFENSIN 12
Authors:Zimmermann, G.R, Legault, P, Selsted, M.E, Pardi, A.
Deposit date:1995-03-08
Release date:1995-10-15
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Solution structure of bovine neutrophil beta-defensin-12: the peptide fold of the beta-defensins is identical to that of the classical defensins.
Biochemistry, 34, 1995
1S6L
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BU of 1s6l by Molmil
Solution structure of MerB, the Organomercurial Lyase involved in the bacterial mercury resistance system
Descriptor: Alkylmercury lyase
Authors:Di Lello, P, Benison, G.C, Valafar, H, Pitts, K.E, Summers, A.O, Legault, P, Omichinski, J.G.
Deposit date:2004-01-25
Release date:2005-04-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structural studies reveal a novel protein fold for MerB, the organomercurial lyase involved in the bacterial mercury resistance system.
Biochemistry, 43, 2004
5URN
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BU of 5urn by Molmil
NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the transactivation domain 1 of p65
Descriptor: RNA polymerase II transcription factor B subunit 1, Transcription factor p65
Authors:Lecoq, L, Omichinski, J.G, Raiola, L, Cyr, N, Chabot, P, Arseneault, G, Legault, P.
Deposit date:2017-02-11
Release date:2017-03-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-kappa B and transcription regulatory factors.
Nucleic Acids Res., 45, 2017
1YN2
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BU of 1yn2 by Molmil
Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions
Descriptor: MANGANESE (II) ION, VS RIBOZYME STEM-LOOP V
Authors:Campbell, D.O, Legault, P.
Deposit date:2005-01-23
Release date:2006-01-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of varkud satellite ribozyme stem-loop v in the presence of magnesium ions and localization of metal-binding sites
Biochemistry, 45, 2006
1YN1
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Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2
Descriptor: VS RIBOZYME STEM-LOOP V
Authors:Campbell, D.O, Legault, P.
Deposit date:2005-01-23
Release date:2006-01-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of varkud satellite ribozyme stem-loop v in the presence of magnesium ions and localization of metal-binding sites
Biochemistry, 45, 2006
1DL6
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BU of 1dl6 by Molmil
SOLUTION STRUCTURE OF HUMAN TFIIB N-TERMINAL DOMAIN
Descriptor: TRANSCRIPTION FACTOR II B (TFIIB), ZINC ION
Authors:Chen, H.-T, Legault, P, Glushka, J, Omichinski, J.G, Scott, R.A.
Deposit date:1999-12-08
Release date:2000-10-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription.
Protein Sci., 9, 2000
1TBK
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NMR structure of the VS ribozyme stem-loop V RNA in the absence of multivalent ions.
Descriptor: VS ribozyme stem-loop V
Authors:Campbell, D.O, Legault, P.
Deposit date:2004-05-20
Release date:2005-03-01
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of the Varkud Satellite Ribozyme Stem-Loop V RNA and Magnesium-Ion Binding from Chemical-Shift Mapping
Biochemistry, 44, 2005
1Y5O
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NMR structure of the amino-terminal domain from the Tfb1 subunit of yeast TFIIH
Descriptor: RNA polymerase II transcription factor B 73 kDa subunit
Authors:Di Lello, P, Nguyen, B.D, Jones, T.N, Potempa, K, Kobor, M.S, Legault, P, Omichinski, J.G.
Deposit date:2004-12-02
Release date:2005-05-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR Structure of the Amino-Terminal Domain from the Tfb1 Subunit of TFIIH and Characterization of Its Phosphoinositide and VP16 Binding Sites
Biochemistry, 44, 2005
1OW9
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NMR Structure of the Active Conformation of the VS Ribozyme Cleavage Site
Descriptor: A mimic of the VS Ribozyme Hairpin Substrate
Authors:Hoffmann, B, Mitchell, G.T, Gendron, P, Major, F, Andersen, A.A, Collins, R.A, Legault, P.
Deposit date:2003-03-28
Release date:2003-05-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR Structure of the Active Conformation of the Varkud satellite Ribozyme Cleavage Site
Proc.Natl.Acad.Sci.USA, 100, 2003
1NHA
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BU of 1nha by Molmil
Solution Structure of the Carboxyl-Terminal Domain of RAP74 and NMR Characterization of the FCP-Binding Sites of RAP74 and CTD of RAP74, the subunit of Human TFIIF
Descriptor: Transcription initiation factor IIF, alpha subunit
Authors:Nguyen, B.D, Chen, H.T, Kobor, M.S, Greenblatt, J, Legault, P, Omichinski, J.G.
Deposit date:2002-12-19
Release date:2003-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of the Carboxyl-Terminal Domain of RAP74 and NMR Characterization of the FCP1-Binding Sites of RAP74 and Human TFIIB.
Biochemistry, 42, 2003
1ONV
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BU of 1onv by Molmil
NMR Structure of a Complex Containing the TFIIF Subunit RAP74 and the RNAP II CTD Phosphatase FCP1
Descriptor: Transcription initiation factor IIF, alpha subunit, serine phosphatase FCP1a
Authors:Nguyen, B.D, Abbott, K.L, Potempa, K, Kobor, M.S, Archambault, J, Greenblatt, J, Legault, P, Omichinski, J.G.
Deposit date:2003-03-02
Release date:2003-05-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR Structure of a Complex Containing the TFIIF Subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1
Proc.Natl.Acad.Sci.USA, 100, 2003
2GS0
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BU of 2gs0 by Molmil
NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the activation domain of p53
Descriptor: Cellular tumor antigen p53, RNA polymerase II transcription factor B subunit 1
Authors:Di Lello, P, Jones, T.N, Nguyen, B.D, Legault, P, Omichinski, J.G.
Deposit date:2006-04-25
Release date:2006-10-31
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53.
Mol.Cell, 22, 2006
2KDT
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BU of 2kdt by Molmil
PC1/3 DCSG sorting domain structure in DPC
Descriptor: Neuroendocrine convertase 1
Authors:Dikeakos, J.D, Di Lello, P, Lacombe, M.J, Ghirlando, R, Legault, P, Reudelhuber, T.L, Omichinski, J.G.
Deposit date:2009-01-19
Release date:2009-04-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Functional and structural characterization of a dense core secretory granule sorting domain from the PC1/3 protease.
Proc.Natl.Acad.Sci.USA, 106, 2009
2K7L
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BU of 2k7l by Molmil
NMR structure of a complex formed by the C-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1
Descriptor: General transcription factor IIF subunit 1, centFCP1-T584PO4 peptide
Authors:Yang, A, Abbott, K.L, Desjardins, A, Di Lello, P, Omichinski, J.G, Legault, P.
Deposit date:2008-08-13
Release date:2009-06-02
Last modified:2020-02-19
Method:SOLUTION NMR
Cite:NMR structure of a complex formed by the carboxyl-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1 phosphatase
Biochemistry, 48, 2009
2LDZ
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SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: LEAD-DEPENDENT RIBOZYME
Authors:Hoogstraten, C.G, Legault, P, Pardi, A.
Deposit date:1998-08-18
Release date:1999-02-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis.
J.Mol.Biol., 284, 1998
2L5Z
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NMR structure of the A730 loop of the Neurospora VS ribozyme
Descriptor: RNA (26-MER)
Authors:Desjardins, G, Bonneau, E, Girard, N, Boisbouvier, J, Legault, P.
Deposit date:2010-11-10
Release date:2011-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site.
Nucleic Acids Res., 39, 2011
2MI0
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BU of 2mi0 by Molmil
NMR structure of the I-V kissing-loop interaction of the Neurospora VS ribozyme
Descriptor: 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3'
Authors:Bouchard, P, Legault, P.
Deposit date:2013-12-05
Release date:2014-01-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insights into substrate recognition by the neurospora varkud satellite ribozyme: importance of u-turns at the kissing-loop junction.
Biochemistry, 53, 2014
2MTJ
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BU of 2mtj by Molmil
NMR structure of the III-IV-V three-way junction from the VS ribozyme
Descriptor: RNA (47-MER)
Authors:Bonneau, E, Legault, P.
Deposit date:2014-08-19
Release date:2014-10-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of the III-IV-V Three-Way Junction from the Varkud Satellite Ribozyme and Identification of Magnesium-Binding Sites Using Paramagnetic Relaxation Enhancement.
Biochemistry, 53, 2014
2MTK
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NMR structure of the III-IV-V three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement
Descriptor: MAGNESIUM ION, RNA (47-MER)
Authors:Bonneau, E, Legault, P.
Deposit date:2014-08-19
Release date:2014-10-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of the III-IV-V Three-Way Junction from the Varkud Satellite Ribozyme and Identification of Magnesium-Binding Sites Using Paramagnetic Relaxation Enhancement.
Biochemistry, 53, 2014
2N3Q
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BU of 2n3q by Molmil
NMR structure of the II-III-VI three-way junction from the VS ribozyme
Descriptor: RNA (62-MER)
Authors:Bonneau, E, Girard, N, Lemieux, S, Legault, P.
Deposit date:2015-06-09
Release date:2015-07-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure.
Rna, 21, 2015
2N3R
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BU of 2n3r by Molmil
NMR structure of the II-III-VI three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement
Descriptor: MAGNESIUM ION, RNA (62-MER)
Authors:Bonneau, E, Girard, N, Lemieux, S, Legault, P.
Deposit date:2015-06-09
Release date:2015-07-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure.
Rna, 21, 2015
2KE3
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BU of 2ke3 by Molmil
PC1/3 DCSG sorting domain in CHAPS
Descriptor: Neuroendocrine convertase 1
Authors:Dikeakos, J.D, Di Lello, P, Lacombe, M.J, Ghirlando, R, Legault, P, Reudelhuber, T.L, Omichinski, J.G.
Deposit date:2009-01-22
Release date:2009-04-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Functional and structural characterization of a dense core secretory granule sorting domain from the PC1/3 protease
Proc.Natl.Acad.Sci.USA, 106, 2009
2MIS
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BU of 2mis by Molmil
NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights Into RNA-Metal Ion Interactions
Descriptor: MAGNESIUM ION, VS Ribozyme
Authors:Bonneau, E, Legault, P.
Deposit date:2013-12-19
Release date:2014-01-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights into RNA-Metal-Ion Interactions.
Biochemistry, 53, 2014

 

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