Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 793 件

6X6P
DownloadVisualize
BU of 6x6p by Molmil
Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Herrera, N.G, Morano, N.C, Celikgil, A, Georgiev, G.I, Malonis, R, Lee, J.H, Tong, K, Vergnolle, O, Massimi, A, Yen, L.Y, Noble, A.J, Kopylov, M, Bonanno, J.B, Garrett-Thompson, S.C, Hayes, D.B, Brenowitz, M, Garforth, S.J, Eng, E.T, Lai, J.R, Almo, S.C.
登録日2020-05-28
公開日2020-06-10
最終更新日2021-01-27
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis.
Biorxiv, 2020
5X9R
DownloadVisualize
BU of 5x9r by Molmil
Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
分子名称: CITRATE ANION, Citrate-sodium symporter, beta-D-glucopyranose
著者Jin, M.S, Kim, J.W, Kim, S, Kim, S, Lee, H, Lee, J.-O.
登録日2017-03-08
公開日2017-06-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.98 Å)
主引用文献Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
Sci Rep, 7, 2017
5XAS
DownloadVisualize
BU of 5xas by Molmil
Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
分子名称: CITRATE ANION, Citrate-sodium symporter, SODIUM ION, ...
著者Jin, M.S, Kim, J.W, Kim, S, Kim, S, Lee, H, Lee, J.-O.
登録日2017-03-14
公開日2017-06-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.47 Å)
主引用文献Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
Sci Rep, 7, 2017
8HG9
DownloadVisualize
BU of 8hg9 by Molmil
Cytochrome P450 steroid hydroxylase (BaCYP106A6) from Bacillus species
分子名称: PROTOPORPHYRIN IX CONTAINING FE, cytochrome P450 steroid hydroxylase
著者Do, H, Lee, J.H.
登録日2022-11-14
公開日2023-07-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal Structure and Biochemical Analysis of a Cytochrome P450 Steroid Hydroxylase ( Ba CYP106A6) from Bacillus Species.
J Microbiol Biotechnol., 33, 2023
2WH9
DownloadVisualize
BU of 2wh9 by Molmil
Solution structure of GxTX-1E
分子名称: GUANGXITOXIN-1EGXTX-1E
著者Lee, S.K, Jung, H.H, Lee, J.Y, Lee, C.W, Kim, J.I.
登録日2009-05-02
公開日2010-05-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of Gxtx-1E, a High Affinity Tarantula Toxin Interacting with Voltage Sensors in Kv2.1 Potassium Channels.
Biochemistry, 49, 2010
5YX4
DownloadVisualize
BU of 5yx4 by Molmil
Isoliquiritigenin-complexed Chalcone isomerase (S189A) from the Antarctic vascular plant Deschampsia Antarctica (DaCHI1)
分子名称: 2',4,4'-TRIHYDROXYCHALCONE, Chalcone-flavonone isomerase family protein
著者Lee, C.W, Park, S, Lee, J.H.
登録日2017-12-01
公開日2018-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure and enzymatic properties of chalcone isomerase from the Antarctic vascular plant Deschampsia antarctica Desv.
PLoS ONE, 13, 2018
5YX3
DownloadVisualize
BU of 5yx3 by Molmil
Chalcone isomerase from the Antarctic vascular plant Deschampsia Antarctica (DaCHI1)
分子名称: Chalcone-flavonone isomerase family protein
著者Lee, C.W, Park, S, Lee, J.H.
登録日2017-12-01
公開日2018-02-21
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure and enzymatic properties of chalcone isomerase from the Antarctic vascular plant Deschampsia antarctica Desv.
PLoS ONE, 13, 2018
4ZTT
DownloadVisualize
BU of 4ztt by Molmil
Crystal structures of ferritin mutants reveal diferric-peroxo intermediates
分子名称: Bacterial non-heme ferritin, FE (II) ION, FE (III) ION, ...
著者Kim, S, Park, Y.H, Jung, S.W, Seok, J.H, Chung, Y.B, Lee, D.B, Gowda, G, Lee, J.H, Han, H.R, Cho, A.E, Lee, C, Chung, M.S, Kim, K.H.
登録日2015-05-15
公開日2016-06-15
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.
J. Mol. Biol., 428, 2016
1UDT
DownloadVisualize
BU of 1udt by Molmil
Crystal structure of Human Phosphodiesterase 5 complexed with Sildenafil(Viagra)
分子名称: 5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H-PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE, MAGNESIUM ION, ZINC ION, ...
著者Sung, B.-J, Lee, J.I, Heo, Y.-S, Kim, J.H, Moon, J, Yoon, J.M, Hyun, Y.-L, Kim, E, Eum, S.J, Lee, T.G, Cho, J.M, Park, S.-Y, Lee, J.-O, Jeon, Y.H, Hwang, K.Y, Ro, S.
登録日2003-05-06
公開日2004-05-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules
Nature, 425, 2003
1UHO
DownloadVisualize
BU of 1uho by Molmil
Crystal structure of Human Phosphodiesterase 5 complexed with Vardenafil(Levitra)
分子名称: 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE, MAGNESIUM ION, ZINC ION, ...
著者Sung, B.-J, Lee, J.I, Heo, Y.-S, Kim, J.H, Moon, J, Yoon, J.M, Hyun, Y.-L, Kim, E, Eum, S.J, Lee, T.G, Cho, J.M, Park, S.-Y, Lee, J.-O, Jeon, Y.H, Hwang, K.Y, Ro, S.
登録日2003-07-09
公開日2004-07-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules
Nature, 425, 2003
7N08
DownloadVisualize
BU of 7n08 by Molmil
Crystal structure of the 3D6 antibody fragment bound to the HIV-1 gp41 immunodominant region
分子名称: Fab 3D6 heavy chain, Fab 3D6 light chain, HIV-1 gp41 immunodominant region
著者Cook, J.D, Lee, J.E.
登録日2021-05-25
公開日2022-03-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformational plasticity of the HIV-1 gp41 immunodominant region is recognized by multiple non-neutralizing antibodies.
Commun Biol, 5, 2022
1C03
DownloadVisualize
BU of 1c03 by Molmil
CRYSTAL STRUCTURE OF YPD1P (TRICLINIC FORM)
分子名称: HYPOTHETICAL PROTEIN YDL235C
著者Song, H.K, Lee, J.Y, Lee, M.G, Suh, S.W.
登録日1999-07-14
公開日2000-01-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Insights into eukaryotic multistep phosphorelay signal transduction revealed by the crystal structure of Ypd1p from Saccharomyces cerevisiae.
J.Mol.Biol., 293, 1999
2VRC
DownloadVisualize
BU of 2vrc by Molmil
Crystal structure of the Citrobacter sp. triphenylmethane reductase complexed with NADP(H)
分子名称: TRIPHENYLMETHANE REDUCTASE
著者Kim, Y, Park, H.J, Kwak, S.N, Lee, J.S, Oh, T.K, Kim, M.H.
登録日2008-03-31
公開日2008-09-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Insight Into Bioremediation of Triphenylmethane Dyes by Citrobacter Sp. Triphenylmethane Reductase.
J.Biol.Chem., 283, 2008
6J4N
DownloadVisualize
BU of 6j4n by Molmil
Structure of papua new guinea MBL-1(PNGM-1) native
分子名称: Metallo-beta-lactamases PNGM-1, ZINC ION
著者Hong, M.K, Park, K.S, Jeon, J.H, Lee, J.H, Park, Y.S, Lee, S.H, Kang, L.W.
登録日2019-01-10
公開日2019-02-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The novel metallo-beta-lactamase PNGM-1 from a deep-sea sediment metagenome: crystallization and X-ray crystallographic analysis.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5H77
DownloadVisualize
BU of 5h77 by Molmil
Crystal structure of the PKA-protein A fusion protein
分子名称: cAMP-dependent protein kinase type II-alpha regulatory subunit,Immunoglobulin G-binding protein A
著者Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O.
登録日2016-11-17
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.197 Å)
主引用文献Construction of novel repeat proteins with rigid and predictable structures using a shared helix method.
Sci Rep, 7, 2017
2VRB
DownloadVisualize
BU of 2vrb by Molmil
Crystal structure of the Citrobacter sp. triphenylmethane reductase complexed with NADP(H)
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TRIPHENYLMETHANE REDUCTASE
著者Kim, Y, Park, H.J, Kwak, S.N, Lee, J.S, Oh, T.K, Kim, M.H.
登録日2008-03-31
公開日2008-09-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Insight Into Bioremediation of Triphenylmethane Dyes by Citrobacter Sp. Triphenylmethane Reductase.
J.Biol.Chem., 283, 2008
1SL9
DownloadVisualize
BU of 1sl9 by Molmil
Obelin from Obelia longissima
分子名称: C2-HYDROPEROXY-COELENTERAZINE, Obelin
著者Deng, L, Markova, S, Vysotski, E, Liu, Z.-J, Lee, J, Rose, J, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-03-05
公開日2005-07-19
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Obelin from Obelia longissima
To be Published
5Y3D
DownloadVisualize
BU of 5y3d by Molmil
Structural insight into the interaction between RNA polymerase and VPg for norovirus replication
分子名称: RNA-dependent RNA polymerase, viral protein genome-linked (VPg)
著者Kim, K.H, Lee, J.-H, Seok, J.H.
登録日2017-07-28
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication.
Front Microbiol, 9, 2018
1MKD
DownloadVisualize
BU of 1mkd by Molmil
crystal structure of PDE4D catalytic domain and zardaverine complex
分子名称: 6-(4-DIFLUOROMETHOXY-3-METHOXY-PHENYL)-2H-PYRIDAZIN-3-ONE, MAGNESIUM ION, Phosphodiesterase 4D, ...
著者Lee, M.E, Markowitz, J, Lee, J.-O, Lee, H.
登録日2002-08-29
公開日2003-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of phosphodiesterase 4D and inhibitor complex
FEBS LETT., 530, 2002
1S36
DownloadVisualize
BU of 1s36 by Molmil
Crystal structure of a Ca2+-discharged photoprotein: Implications for the mechanisms of the calcium trigger and the bioluminescence
分子名称: CHLORIDE ION, GLYCEROL, N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE, ...
著者Deng, L, Markova, S.V, Vysotski, E.S, Liu, Z.-J, Lee, J, Rose, J, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-01-12
公開日2004-10-05
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of a Ca2+-discharged photoprotein: implications for mechanisms of the calcium trigger and bioluminescence
J.Biol.Chem., 279, 2004
8HU2
DownloadVisualize
BU of 8hu2 by Molmil
Rattus Syntenin-1 PDZ domain with inhibitor
分子名称: (2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid, Syntenin-1
著者Heo, Y, Lee, J, Yun, J.H, Lee, W.
登録日2022-12-22
公開日2024-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of STNPDZ with inhibitor at 1.60 Angstroms resolution.
To Be Published
3KT7
DownloadVisualize
BU of 3kt7 by Molmil
Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, GLYCEROL, ...
著者Kim, H.S, Kim, H.L, Kim, K.H, Kim, D.J, Lee, S.J, Yoon, J.Y, Yoon, H.J, Lee, H.Y, Park, S.B, Kim, S.-J, Lee, J.Y, Suh, S.W.
登録日2009-11-24
公開日2010-01-19
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex
Nucleic Acids Res., 38, 2010
5AYY
DownloadVisualize
BU of 5ayy by Molmil
CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE REACTANT QUINOLINATE
分子名称: Nicotinate-nucleotide pyrophosphorylase [carboxylating], QUINOLINIC ACID
著者Youn, H.S, Kim, T.G, Kim, M.K, Kang, G.B, Kang, J.Y, Seo, Y.J, Lee, J.G, An, J.Y, Park, K.R, Lee, Y, Im, Y.J, Lee, J.H, Fukuoka, S.I, Eom, S.H.
登録日2015-09-14
公開日2016-02-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Structural Insights into the Quaternary Catalytic Mechanism of Hexameric Human Quinolinate Phosphoribosyltransferase, a Key Enzyme in de novo NAD Biosynthesis
Sci Rep, 6, 2016
5H7A
DownloadVisualize
BU of 5h7a by Molmil
Crystal structure of a repeat protein with four Protein A repeat module
分子名称: Immunoglobulin G-binding protein A
著者Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O.
登録日2016-11-17
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Construction of novel repeat proteins with rigid and predictable structures using a shared helix method.
Sci Rep, 7, 2017
1C02
DownloadVisualize
BU of 1c02 by Molmil
CRYSTAL STRUCTURE OF YEAST YPD1P
分子名称: PHOSPHOTRANSFERASE YPD1P
著者Song, H.K, Lee, J.Y, Lee, M.G, Suh, S.W.
登録日1999-07-14
公開日2000-01-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Insights into eukaryotic multistep phosphorelay signal transduction revealed by the crystal structure of Ypd1p from Saccharomyces cerevisiae.
J.Mol.Biol., 293, 1999

222036

件を2024-07-03に公開中

PDB statisticsPDBj update infoContact PDBjnumon