Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 322 件
7MZ8
DownloadVisualize
BU of 7mz8 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(DZM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-24
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure Of Human Dna Polymerase Beta Complexed With 8Oa As The Template Base In A 1-Nucleotide Gapped Dna
To Be Published
7MZ3
DownloadVisualize
BU of 7mz3 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2021-05-24
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.418 Å)
主引用文献Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
To Be Published
1XDO
DownloadVisualize
BU of 1xdo by Molmil
Crystal Structure of Escherichia coli Polyphosphate Kinase
分子名称: Polyphosphate kinase
著者Zhu, Y, Huang, W, Lee, S.S, Xu, W.
登録日2004-09-07
公開日2005-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis
Embo Rep., 6, 2005
1XDP
DownloadVisualize
BU of 1xdp by Molmil
Crystal Structure of the E.coli Polyphosphate Kinase in complex with AMPPNP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polyphosphate kinase
著者Zhu, Y, Huang, W, Lee, S.S, Xu, W.
登録日2004-09-07
公開日2005-06-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis
Embo Rep., 6, 2005
1XSK
DownloadVisualize
BU of 1xsk by Molmil
Structure of a Family 31 alpha glycosidase glycosyl-enzyme intermediate
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 5(R)-fluoro-beta-D-xylopyranose, Putative family 31 glucosidase yicI, ...
著者Lovering, A.L, Lee, S.S, Kim, Y.W, Withers, S.G, Strynadka, N.C.
登録日2004-10-19
公開日2004-11-10
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic and Structural Analysis of a Family 31 {alpha}-Glycosidase and Its Glycosyl-enzyme Intermediate
J.Biol.Chem., 280, 2005
1XSI
DownloadVisualize
BU of 1xsi by Molmil
Structure of a Family 31 alpha glycosidase
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ACETIC ACID, Putative family 31 glucosidase yicI, ...
著者Lovering, A.L, Lee, S.S, Kim, Y.W, Withers, S.G, Strynadka, N.C.
登録日2004-10-19
公開日2004-10-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic and Structural Analysis of a Family 31 alpha-Glycosidase and Its Glycosyl-enzyme Intermediate
J.Biol.Chem., 280, 2005
1XSJ
DownloadVisualize
BU of 1xsj by Molmil
Structure of a Family 31 alpha glycosidase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Putative family 31 glucosidase yicI
著者Lovering, A.L, Lee, S.S, Kim, Y.W, Withers, S.G, Strynadka, N.C.
登録日2004-10-19
公開日2004-10-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mechanistic and Structural Analysis of a Family 31 alpha-Glycosidase and Its Glycosyl-enzyme Intermediate
J.Biol.Chem., 280, 2005
3C9B
DownloadVisualize
BU of 3c9b by Molmil
Crystal structure of SeMet Vps75
分子名称: Vacuolar protein sorting-associated protein 75
著者Keck, J.L, Berndsen, C.E, Tsubota, T, Lindner, S.E, Lee, S, Holton, J.M, Kaufman, P.D, Denu, J.M.
登録日2008-02-15
公開日2008-08-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75
Nat.Struct.Mol.Biol., 15, 2008
2AF9
DownloadVisualize
BU of 2af9 by Molmil
Crystal Structure analysis of GM2-Activator protein complexed with phosphatidylcholine
分子名称: Ganglioside GM2 activator, ISOPROPYL ALCOHOL, LAURIC ACID, ...
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-25
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
4YJI
DownloadVisualize
BU of 4yji by Molmil
The Crystal Structure of a Bacterial Aryl Acylamidase Belonging to the Amidase signature (AS) enzymes family
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Aryl acylamidase, N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL)
著者Choi, I.-G, Lee, S, Park, E.-H, Ko, H.-J, Bang, W.-G.
登録日2015-03-03
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure analysis of a bacterial aryl acylamidase belonging to the amidase signature enzyme family
Biochem.Biophys.Res.Commun., 467, 2015
4YOQ
DownloadVisualize
BU of 4yoq by Molmil
Crystal Structure of MutY bound to its anti-substrate
分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
著者Wang, L, Lee, S, Verdine, G.L.
登録日2015-03-11
公開日2015-05-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4YPH
DownloadVisualize
BU of 4yph by Molmil
Crystal Structure of MutY bound to its anti-substrate with the disulfide cross-linker reduced
分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(TP*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
著者Wang, L, Lee, S, Verdine, G.L.
登録日2015-03-12
公開日2015-05-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4Z6E
DownloadVisualize
BU of 4z6e by Molmil
Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2015-04-04
公開日2016-04-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.752 Å)
主引用文献Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta.
Biochem. J., 475, 2018
4Z6F
DownloadVisualize
BU of 4z6f by Molmil
Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(6OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2015-04-04
公開日2016-04-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.444 Å)
主引用文献Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta.
Biochem. J., 475, 2018
4Z6D
DownloadVisualize
BU of 4z6d by Molmil
Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP
分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2015-04-04
公開日2016-04-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta.
Biochem. J., 475, 2018
3MD5
DownloadVisualize
BU of 3md5 by Molmil
Prion peptide
分子名称: Major prion protein
著者Yee, V.C, Lee, S.
登録日2010-03-29
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Diversity in the cross-beta spine structure of prion peptides
To be Published
2AG2
DownloadVisualize
BU of 2ag2 by Molmil
Crystal Structure Analysis of GM2-activator protein complexed with Phosphatidylcholine
分子名称: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE, 2-(((R)-2,3-DIHYDROXYPROPYL)PHOSPHORYLOXY)-N,N,N-TRIMETHYLETHANAMINIUM, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-26
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
2WTX
DownloadVisualize
BU of 2wtx by Molmil
Insight into the mechanism of enzymatic glycosyltransfer with retention through the synthesis and analysis of bisubstrate glycomimetics of trehalose-6-phosphate synthase
分子名称: 1,2-ETHANEDIOL, ALPHA, ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING], ...
著者Errey, J.C, Lee, S.S, Gibson, R.P, Martinez-Fleites, C, Barry, C.S, Jung, P.M.J, OSullivan, A, Davis, B.G, Davies, G.J.
登録日2009-09-25
公開日2010-02-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic Insight Into Enzymatic Glycosyl Transfer with Retention of Configuration Through Analysis of Glycomimetic Inhibitors.
Angew.Chem.Int.Ed.Engl., 49, 2010
2AG9
DownloadVisualize
BU of 2ag9 by Molmil
Crystal Structure of the Y137S mutant of GM2-Activator Protein
分子名称: Ganglioside GM2 activator, ISOPROPYL ALCOHOL, MYRISTIC ACID
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-26
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
4YPR
DownloadVisualize
BU of 4ypr by Molmil
Crystal Structure of D144N MutY bound to its anti-substrate
分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ...
著者Wang, L, Lee, S, Verdine, G.L.
登録日2015-03-13
公開日2015-05-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase.
J.Biol.Chem., 290, 2015
4Z6C
DownloadVisualize
BU of 4z6c by Molmil
Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable CTP
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
著者Koag, M.-C, Lee, S.
登録日2015-04-04
公開日2016-04-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.677 Å)
主引用文献Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta.
Biochem. J., 475, 2018
3C9D
DownloadVisualize
BU of 3c9d by Molmil
Crystal structure of Vps75
分子名称: Vacuolar protein sorting-associated protein 75
著者Berndsen, C.E, Tsubota, T, Lindner, S.E, Lee, S, Holton, J.M, Kaufman, P.D, Keck, J.L, Denu, J.M.
登録日2008-02-15
公開日2008-08-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75
Nat.Struct.Mol.Biol., 15, 2008
3KL9
DownloadVisualize
BU of 3kl9 by Molmil
Crystal structure of PepA from Streptococcus pneumoniae
分子名称: Glutamyl aminopeptidase, ZINC ION
著者Kim, K.K, Lee, S, Kim, D.
登録日2009-11-07
公開日2010-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for the substrate specificity of PepA from Streptococcus pneumoniae, a dodecameric tetrahedral protease
Biochem.Biophys.Res.Commun., 391, 2010
2AGC
DownloadVisualize
BU of 2agc by Molmil
Crystal Structure of mouse GM2- activator Protein
分子名称: Ganglioside GM2 activator, LAURIC ACID, MYRISTIC ACID
著者Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
登録日2005-07-26
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
3MD4
DownloadVisualize
BU of 3md4 by Molmil
Prion peptide
分子名称: Major prion protein
著者Yee, V.C, Lee, S.
登録日2010-03-29
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Diversity in the cross-beta spine structure of prion peptides
To be Published

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon