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PDB: 510 results

5JB7
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BU of 5jb7 by Molmil
A simplified BPTI variant containing 24 alanines out of 58 residues
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2016-04-13
Release date:2017-04-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy
Sci Rep, 7, 2017
5XX5
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BU of 5xx5 by Molmil
A BPTI-[5,55] variant with C14GA38I mutations
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Hydrophobic surface residues can stabilize a protein through improved water-protein interactions.
Febs J., 2019
5XX2
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BU of 5xx2 by Molmil
A BPTI-[5,55] variant with C14GA38L mutations
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Hydrophobic surface residues can stabilize a protein through improved water-protein interactions.
Febs J., 2019
5XX4
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BU of 5xx4 by Molmil
A BPTI-[5,55] variant with C14GA38K mutations
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Hydrophobic surface residues can stabilize a protein through improved water-protein interactions.
Febs J., 2019
5XX3
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BU of 5xx3 by Molmil
A BPTI-[5,55] variant with C14GA38G mutations
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Hydrophobic surface residues can stabilize a protein through improved water-protein interactions.
Febs J., 2019
5XX8
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BU of 5xx8 by Molmil
Hetero-micro-seeding: Crystal structure of BPTI-[555]C14GA38I variant using micro-seeds from -C14GA38L variant
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A hetero-micro-seeding strategy for readily crystallizing closely related protein variants
Biochem. Biophys. Res. Commun., 493, 2017
5XX7
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BU of 5xx7 by Molmil
Hetero-micro-seeding: Crystal structure of BPTI-[5,55]C14GA38I variant using micro-seeds from -C14GA38I variant
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A hetero-micro-seeding strategy for readily crystallizing closely related protein variants
Biochem. Biophys. Res. Commun., 493, 2017
5XX6
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BU of 5xx6 by Molmil
Hetero-micro-seeding: Crystal structure of BPTI-[5,55]C14GA38I variant using micro-seeds from -C14GA38G variant
Descriptor: Pancreatic trypsin inhibitor, SULFATE ION
Authors:Islam, M.M.
Deposit date:2017-07-01
Release date:2018-07-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:A hetero-micro-seeding strategy for readily crystallizing closely related protein variants
Biochem. Biophys. Res. Commun., 493, 2017
3L3T
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BU of 3l3t by Molmil
Human mesotrypsin complexed with amyloid precursor protein inhibitor variant (APPIR15K)
Descriptor: CALCIUM ION, FORMIC ACID, PRSS3 protein, ...
Authors:Salameh, M.A, Soares, A.S, Radisky, E.S.
Deposit date:2009-12-17
Release date:2010-09-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.378 Å)
Cite:Determinants of affinity and proteolytic stability in interactions of Kunitz family protease inhibitors with mesotrypsin.
J.Biol.Chem., 285, 2010
3L33
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BU of 3l33 by Molmil
Human mesotrypsin complexed with amyloid precursor protein inhibitor(APPI)
Descriptor: Amyloid beta A4 protein, CALCIUM ION, FORMIC ACID, ...
Authors:Salameh, M.A, Soares, A.S, Radisky, E.S.
Deposit date:2009-12-16
Release date:2010-09-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Determinants of affinity and proteolytic stability in interactions of Kunitz family protease inhibitors with mesotrypsin.
J.Biol.Chem., 285, 2010
1VE7
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BU of 1ve7 by Molmil
Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1 in complex with p-nitrophenyl phosphate
Descriptor: 4-NITROPHENYL PHOSPHATE, Acylamino-acid-releasing enzyme, GLYCEROL
Authors:Bartlam, M, Wang, G, Gao, R, Yang, H, Zhao, X, Xie, G, Cao, S, Feng, Y, Rao, Z.
Deposit date:2004-03-27
Release date:2004-11-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
STRUCTURE, 12, 2004
8BAG
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BU of 8bag by Molmil
Copper(II) bound to a non-canonical quadruplex containing the damaged base 8-oxoguanine
Descriptor: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3')
Authors:Lambert, M.C, Hall, J.P.
Deposit date:2022-10-11
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Oxidative damage induce copper(II)-DNA binding
To Be Published
8BAF
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BU of 8baf by Molmil
Non-canonical quadruplex containing the oxidation product 8-oxoguanine
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3')
Authors:Lambert, M.C, Hall, J.P.
Deposit date:2022-10-11
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Oxidative damage induce copper(II)-DNA binding
To Be Published
8BAE
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BU of 8bae by Molmil
Copper(II) bound to a non-canonical quadruplex
Descriptor: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3')
Authors:Lambert, M.C, Hall, J.P.
Deposit date:2022-10-11
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Oxidative damage induce copper(II)-DNA binding
To Be Published
6WIQ
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BU of 6wiq by Molmil
Crystal structure of the co-factor complex of NSP7 and the C-terminal domain of NSP8 from SARS CoV-2
Descriptor: Non-structural protein 7, Non-structural protein 8
Authors:Wilamowski, M, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-04-10
Release date:2020-04-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication.
Biophys.J., 120, 2021
7OU4
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BU of 7ou4 by Molmil
The structure of MutS bound to one molecule of ATP and one molecule of ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein MutS, ...
Authors:Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
Deposit date:2021-06-11
Release date:2022-01-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OU2
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BU of 7ou2 by Molmil
The structure of MutS bound to two molecules of ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS
Authors:Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
Deposit date:2021-06-11
Release date:2022-01-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OU0
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BU of 7ou0 by Molmil
The structure of MutS bound to two molecules of ADP-Vanadate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS, MAGNESIUM ION, ...
Authors:Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
Deposit date:2021-06-10
Release date:2022-01-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
7OTO
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BU of 7oto by Molmil
The structure of MutS bound to two molecules of AMPPNP
Descriptor: DNA mismatch repair protein MutS, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V.
Deposit date:2021-06-10
Release date:2022-01-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair.
Nat.Struct.Mol.Biol., 29, 2022
6WTC
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BU of 6wtc by Molmil
Crystal Structure of the Second Form of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
Descriptor: ACETIC ACID, Non-structural protein 7, Non-structural protein 8
Authors:Wilamowski, M, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-05-02
Release date:2020-05-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Second Form of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
To Be Published
6XIP
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BU of 6xip by Molmil
The 1.5 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
Descriptor: 1,2-ETHANEDIOL, Non-structural protein 7, Non-structural protein 8
Authors:Wilamowski, M, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-06-20
Release date:2020-07-01
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication.
Biophys.J., 120, 2021
6XKM
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BU of 6xkm by Molmil
Room Temperature Structure of SARS-CoV-2 NSP10/NSP16 Methyltransferase in a Complex with SAM Determined by Fixed-Target Serial Crystallography
Descriptor: 2'-O-methyltransferase, CHLORIDE ION, Non-structural protein 10, ...
Authors:Wilamowski, M, Sherrell, D.A, Minasov, G, Kim, Y, Shuvalova, L, Lavens, A, Chard, R, Rosas-Lemus, M, Maltseva, N, Jedrzejczak, R, Michalska, K, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-06-26
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:2'-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography.
Proc.Natl.Acad.Sci.USA, 118, 2021
6GDY
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BU of 6gdy by Molmil
Crystal structure of 2OG oxygenase JMJD6 (aa 1-343) in complex with Fe(II) and 2OG
Descriptor: 2-OXOGLUTARIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6, ...
Authors:Islam, M.S, Schofield, C.J, McDonough, M.A.
Deposit date:2018-04-24
Release date:2019-04-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Biochemical and structural investigations clarify the substrate selectivity of the 2-oxoglutarate oxygenase JMJD6.
J.Biol.Chem., 294, 2019
3GI4
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BU of 3gi4 by Molmil
Crystal structure of protease inhibitor, KB60 in complex with wild type HIV-1 protease
Descriptor: 5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-2-oxo-3-[3-(tr ifluoromethyl)phenyl]-5-oxazolidinecarboxamide, ACETATE ION, PHOSPHATE ION, ...
Authors:Nalam, M.N.L, Schiffer, C.A.
Deposit date:2009-03-05
Release date:2010-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Evaluating the substrate-envelope hypothesis: structural analysis of novel HIV-1 protease inhibitors designed to be robust against drug resistance.
J.Virol., 84, 2010
5A7R
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BU of 5a7r by Molmil
Human poly(ADP-ribose) glycohydrolase in complex with synthetic dimeric ADP-ribose
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, POLY(ADP-RIBOSE) GLYCOHYDROLASE, ...
Authors:Lambrecht, M.J, Brichacek, M, Barkauskaite, E, Ariza, A, Ahel, I, Hergenrother, P.J.
Deposit date:2015-07-09
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Synthesis of Dimeric Adp-Ribose and its Structure with Human Poly(Adp-Ribose) Glycohydrolase.
J.Am.Chem.Soc., 137, 2015

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