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PDB: 1231 results

8HWD
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Cryo-EM Structure of D5 ADP form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Primase D5
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWG
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BU of 8hwg by Molmil
D5 ATPrS-ADP-ssDNA form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWF
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BU of 8hwf by Molmil
Cryo-EM Structure of D5 ADP-ssDNA form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWC
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BU of 8hwc by Molmil
Cryo-EM Structure of D5 Apo
Descriptor: Primase D5
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWH
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BU of 8hwh by Molmil
Cryo-EM Structure of D5 Apo-ssDNA form
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), Primase D5
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
4N4Y
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BU of 4n4y by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
Authors:Li, Y, Chen, Y, Stout, C.D.
Deposit date:2013-10-08
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
To be Published
3N54
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BU of 3n54 by Molmil
Crystal Structure of the GerBC protein
Descriptor: CHLORIDE ION, SULFATE ION, Spore germination protein B3
Authors:Li, Y, Setlow, B, Setlow, P, Hao, B.
Deposit date:2010-05-24
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the GerBC Component of a Bacillus subtilis Spore Germinant Receptor.
J.Mol.Biol., 402, 2010
8J4I
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BU of 8j4i by Molmil
Unveiling the Role of Human Prohibitin 2 as a Mitochondrial Calcium Channel in Parkinson's Disease
Descriptor: Prohibitin-2
Authors:Li, Y.Y, Fang, Y, Gao, Y.X, Ding, W, Yang, J, Liu, Y, Shen, B, Wang, J.F, Zhou, S.
Deposit date:2023-04-20
Release date:2024-06-05
Method:SOLUTION NMR
Cite:Human Prohibitin 2 is a Mitochondrial Ca2+-Selective Channel
To Be Published
3EW9
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BU of 3ew9 by Molmil
RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and potassium ions
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2008-10-14
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis.
Acta Crystallogr.,Sect.D, 65, 2009
7X8L
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BU of 7x8l by Molmil
Microbial family VII carboxylesterase E93 Wild-type
Descriptor: Carboxylic ester hydrolase
Authors:Li, Y, Zhen, R, Li, J, Xu, X.
Deposit date:2022-03-13
Release date:2023-03-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and functional insight into a marine microbial carboxylesterase E93
To Be Published
3EWA
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BU of 3ewa by Molmil
RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and ammonium ions
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2008-10-14
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis.
Acta Crystallogr.,Sect.D, 65, 2009
3JBB
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BU of 3jbb by Molmil
Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
Descriptor: PHYCOCYANOBILIN, SULFATE ION, allophycocyanin beta chain, ...
Authors:Li, Y, Lin, Y, Garvey, C, Birch, D, Corkery, R.W, Loughlin, P.C, Scheer, H, Willows, R.D, Chen, M.
Deposit date:2015-08-26
Release date:2015-11-11
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris.
Biochim.Biophys.Acta, 1857, 2015
3FYH
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BU of 3fyh by Molmil
Recombinase in complex with ADP and metatungstate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA repair and recombination protein radA, MAGNESIUM ION, ...
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2009-01-22
Release date:2009-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an archaeal Rad51 homologue in complex with a metatungstate inhibitor.
Biochemistry, 48, 2009
7FAC
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BU of 7fac by Molmil
Crystal Structure of C-terminus of the non-structural protein 2 from SARS coronavirus
Descriptor: Non-structural protein 2, ZINC ION
Authors:Li, Y.Y, Ren, Z.L, Bao, Z.H, Ming, Z.H, Yan, L.M, Lou, Z.Y, Rao, Z.H.
Deposit date:2021-07-06
Release date:2022-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The Life of SARS-CoV-2 Inside Cells: Replication-Transcription Complex Assembly and Function.
Annu.Rev.Biochem., 91, 2022
7FA1
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BU of 7fa1 by Molmil
Crystal Structure of N-terminus of the non-structural protein 2 from SARS coronavirus
Descriptor: Non-structural protein 2, ZINC ION
Authors:Li, Y.Y, Ren, Z.L, Bao, Z.H, Ming, Z.H, Yan, L.M, Lou, Z.Y, Rao, Z.H.
Deposit date:2021-07-05
Release date:2022-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Life of SARS-CoV-2 Inside Cells: Replication-Transcription Complex Assembly and Function.
Annu.Rev.Biochem., 91, 2022
5YDM
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BU of 5ydm by Molmil
The crystal structure of the Acyl Transferase domain of SpnD complex with benzylmalonyl
Descriptor: (2R)-2-methanoyl-3-phenyl-propanoic acid, PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-13
Release date:2018-05-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
5YDL
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BU of 5ydl by Molmil
The crystal structure of the Acyl Transferase domain of SpnD complex with 2-(pent-4-yn-1-yl)malonyl
Descriptor: (2R)-2-methanoylhept-6-ynoic acid, PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-13
Release date:2018-05-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
5YDA
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BU of 5yda by Molmil
The crystal structure of the Acyl Transferase domain of SpnD
Descriptor: PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-12
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
4OEG
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BU of 4oeg by Molmil
Crystal Structure Analysis of FGF2-Disaccharide (S9I2) complex
Descriptor: 2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-1-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid, Fibroblast growth factor 2
Authors:Li, Y.C, Hsiao, C.D.
Deposit date:2014-01-13
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Interactions that influence the binding of synthetic heparan sulfate based disaccharides to fibroblast growth factor-2.
Acs Chem.Biol., 9, 2014
4OEE
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BU of 4oee by Molmil
Crystal Structure Analysis of FGF2-Disaccharide (S3I2) complex
Descriptor: 2-deoxy-3-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-1-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid, Fibroblast growth factor 2
Authors:Li, Y.C, Hsiao, C.D.
Deposit date:2014-01-13
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Interactions that influence the binding of synthetic heparan sulfate based disaccharides to fibroblast growth factor-2.
Acs Chem.Biol., 9, 2014
8I9H
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BU of 8i9h by Molmil
S-RBD (Omicron XBB.1) in complex with PD of ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
Deposit date:2023-02-06
Release date:2024-02-07
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov, 9, 2023
8I9G
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BU of 8i9g by Molmil
S-RBD (Omicron BF.7) in complex with PD of ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
Deposit date:2023-02-06
Release date:2024-02-07
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov, 9, 2023
8I9F
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BU of 8i9f by Molmil
S-RBD (Omicron BA.2.75) in complex with PD of ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
Deposit date:2023-02-06
Release date:2024-02-07
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov, 9, 2023
8I9B
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BU of 8i9b by Molmil
S-ECD (Omicron BA.2.75) in complex with PD of ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
Deposit date:2023-02-06
Release date:2024-02-07
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov, 9, 2023
8I9C
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BU of 8i9c by Molmil
S-ECD (Omicron BF.7) in complex with PD of ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
Deposit date:2023-02-06
Release date:2024-02-07
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov, 9, 2023

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PDB entries from 2024-11-06

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