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PDB: 307 件

5DZJ
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Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T206 in conformation A
分子名称: (2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, L,D-transpeptidase 2
著者Kumar, P, Ginell, S.L, Lamichhane, G.
登録日2015-09-25
公開日2016-10-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.095 Å)
主引用文献Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
3D55
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Crystal structure of M. tuberculosis YefM antitoxin
分子名称: SULFATE ION, Uncharacterized protein Rv3357/MT3465
著者Kumar, P, Issac, B, Dodson, E.J, Turkenberg, J.P, Mande, S.C.
登録日2008-05-15
公開日2008-12-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein
J.Mol.Biol., 383, 2008
3CTO
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Crystal Structure of M. tuberculosis YefM antitoxin
分子名称: SULFATE ION, Uncharacterized protein Rv3357/MT3465
著者Kumar, P, Issac, B, Dodson, E.J, Turkenberg, J.P, Mande, S.C.
登録日2008-04-14
公開日2008-12-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein
J.Mol.Biol., 383, 2008
3BO8
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The High Resolution Crystal Structure of HLA-A1 Complexed with the MAGE-A1 Peptide
分子名称: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
著者Kumar, P, Vahedi-Faridi, A, Saenger, W, Ziegler, A, Uchanska-Ziegler, B.
登録日2007-12-17
公開日2008-12-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity
Protein Sci., 18, 2009
3GZX
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Crystal Structure of the Biphenyl Dioxygenase in complex with Biphenyl from Comamonas testosteroni Sp. Strain B-356
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BIPHENYL, Biphenyl dioxygenase subunit alpha, ...
著者Kumar, P, Colbert, C.L, Bolin, J.T.
登録日2009-04-08
公開日2010-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
Plos One, 8, 2013
8UJG
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and the mono-glycopeptide Srs13.2
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UI1
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 at pH 7.3
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJE
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: DI(HYDROXYETHYL)ETHER, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJF
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UI6
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BU of 8ui6 by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-10
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHV
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X-ray crystal structure of Toxoplasma gondii Apo GalNAc-T3
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJH
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and a CST1 diglycopeptide.
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-11
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHZ
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X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with Mn2+
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase, ...
著者Kumar, P, Samara, N.L.
登録日2023-10-09
公開日2024-05-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
4R7E
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BU of 4r7e by Molmil
Structure of Bre1 RING domain
分子名称: E3 ubiquitin-protein ligase BRE1, ZINC ION
著者Kumar, P, Wolberger, C.
登録日2014-08-27
公開日2015-05-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Structure of the yeast Bre1 RING domain.
Proteins, 83, 2015
6BMS
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BU of 6bms by Molmil
Palmitoyltransferase structure
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, DODECYL-BETA-D-MALTOSIDE, PALMITIC ACID, ...
著者Kumar, P, Rajashankar, K.
登録日2017-11-15
公開日2018-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.441 Å)
主引用文献Fatty acyl recognition and transfer by an integral membraneS-acyltransferase.
Science, 359, 2018
2XR8
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Crystal structure of biphenyl dioxygenase from Burkholderia xenovorans LB400
分子名称: BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, FE (II) ION, ...
著者Kumar, P, Bolin, J.T.
登録日2010-09-12
公開日2010-11-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
2XRX
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BU of 2xrx by Molmil
CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400
分子名称: BIPHENYL, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
著者Kumar, P, Bolin, J.T.
登録日2010-09-23
公開日2010-11-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
2XSH
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CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400 IN COMPLEX WITH 2,6 DI CHLOROBIPHENYL
分子名称: 2,6-DICHLOROBIPHENYL, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
著者Kumar, P, Bolin, J.T.
登録日2010-09-29
公開日2010-11-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
2YFJ
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Crystal structure of Biphenyl dioxygenase variant RR41 with dibenzofuran
分子名称: BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, DIBENZOFURAN, ...
著者Kumar, P, Sylvestre, M, Bolin, J.T.
登録日2011-04-06
公開日2011-06-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Retuning Rieske-Type Oxygenases to Expand Substrate Range.
J.Biol.Chem., 286, 2011
2XSO
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BU of 2xso by Molmil
CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400
分子名称: BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, FE (II) ION, ...
著者Kumar, P, Bolin, J.T.
登録日2010-09-29
公開日2010-11-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
2YFI
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Crystal Structure of Biphenyl dioxygenase variant RR41 (BPDO-RR41)
分子名称: BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, FE (II) ION, ...
著者Kumar, P, Bolin, J.T.
登録日2011-04-06
公開日2011-06-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Retuning Rieske-Type Oxygenases to Expand Substrate Range.
J.Biol.Chem., 286, 2011
2YFL
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Crystal Structure of Biphenyl dioxygenase variant RR41 with 2-chloro dibenzofuran
分子名称: 2-CHLORODIBENZOFURAN, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
著者Kumar, P, Bolin, J.T.
登録日2011-04-06
公開日2012-05-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Insights Into the Metabolism of 2-Chlorodibenzofuran by an Evolved Biphenyl Dioxygenase.
Biochem.Biophys.Res.Commun., 421, 2012
3BP4
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The high resolution crystal structure of HLA-B*2705 in complex with a Cathepsin A signal sequence peptide pCatA
分子名称: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
著者Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A.
登録日2007-12-18
公開日2008-12-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
3BP7
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The high resolution crystal structure of HLA-B*2709 in complex with a Cathepsin A signal sequence peptide, pCatA
分子名称: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
著者Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A.
登録日2007-12-18
公開日2008-12-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
3BXN
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The high resolution crystal structure of HLA-B*1402 complexed with a Cathepsin A signal sequence peptide, pCatA
分子名称: Cathepsin A signal sequence octapeptide, GLYCEROL, HLA-B*1402 extracellular domain, ...
著者Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A.
登録日2008-01-14
公開日2009-02-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.864 Å)
主引用文献Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009

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