2PT1
 
 | | FutA1 Synechocystis PCC 6803 | | Descriptor: | Iron transport protein, SULFATE ION | | Authors: | Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J. | | Deposit date: | 2007-05-07 | | Release date: | 2007-07-10 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
|
|
6E57
 | | Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide | | Descriptor: | 1,2-ETHANEDIOL, PHOSPHATE ION, SODIUM ION, ... | | Authors: | Koropatkin, N.M, Schnizlein, M, Bahr, C.M.E. | | Deposit date: | 2018-07-19 | | Release date: | 2019-05-29 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.71 Å) | | Cite: | Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
|
|
4UA8
 | |
4UAC
 | | EUR_01830 with acarbose | | Descriptor: | 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Carbohydrate ABC transporter substrate-binding protein, ... | | Authors: | Koropatkin, N.M, Orlovsky, N.I. | | Deposit date: | 2014-08-08 | | Release date: | 2014-12-10 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Mol.Microbiol., 95, 2015
|
|
1WVC
 | | alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP | | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, ... | | Authors: | Koropatkin, N.M, Cleland, W.W, Holden, H.M. | | Deposit date: | 2004-12-14 | | Release date: | 2005-01-11 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi.
J.Biol.Chem., 280, 2005
|
|
1WVG
 | | Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi | | Descriptor: | ADENOSINE-5-DIPHOSPHORIBOSE, CDP-glucose 4,6-dehydratase, CYTIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE | | Authors: | Koropatkin, N.M, Holden, H.M. | | Deposit date: | 2004-12-15 | | Release date: | 2005-01-26 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose.
Acta Crystallogr.,Sect.D, 61, 2005
|
|
1TZF
 | |
5J5U
 | | Fjoh_4561 chitin-binding protein | | Descriptor: | RagB/SusD domain protein | | Authors: | Koropatkin, N.M. | | Deposit date: | 2016-04-03 | | Release date: | 2017-02-08 | | Last modified: | 2023-09-27 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.
Biotechnol Biofuels, 9, 2016
|
|
5J90
 | |
1ORR
 | |
3K8K
 | | Crystal structure of SusG | | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Alpha-amylase, ... | | Authors: | Koropatkin, N.M, Smith, T.J. | | Deposit date: | 2009-10-14 | | Release date: | 2010-03-02 | | Last modified: | 2017-11-01 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
|
|
3K8L
 | |
3K8M
 | | Crystal structure of SusG with acarbose | | Descriptor: | 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | | Authors: | Koropatkin, N.M, Smith, T.J. | | Deposit date: | 2009-10-14 | | Release date: | 2010-03-02 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
|
|
4FEM
 | | Structure of SusE with alpha-cyclodextrin | | Descriptor: | 1,2-ETHANEDIOL, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Outer membrane protein SusE | | Authors: | Koropatkin, N.M, Cameron, E.A, Martens, E.C. | | Deposit date: | 2012-05-30 | | Release date: | 2012-08-29 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
|
|
4FCH
 | | Crystal Structure SusE from Bacteroides thetaiotaomicron with maltoheptaose | | Descriptor: | 1,2-ETHANEDIOL, Outer membrane protein SusE, SULFATE ION, ... | | Authors: | Koropatkin, N.M, Cameron, E.A, Martens, E.C. | | Deposit date: | 2012-05-24 | | Release date: | 2012-08-29 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.3 Å) | | Cite: | Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
|
|
4FE9
 | | Crystal Structure of SusF from Bacteroides thetaiotaomicron | | Descriptor: | 1,2-ETHANEDIOL, Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, GLYCEROL, ... | | Authors: | Koropatkin, N.M, Cameron, E.A, Martens, E.C. | | Deposit date: | 2012-05-29 | | Release date: | 2012-08-29 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
|
|
5VOL
 | | Bacint_04212 ferulic acid esterase | | Descriptor: | CALCIUM ION, ISOPROPYL ALCOHOL, Putative esterase | | Authors: | Koropatkin, N.M, Cann, I, Mackie, R.I. | | Deposit date: | 2017-05-03 | | Release date: | 2017-07-19 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.98 Å) | | Cite: | Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases.
J. Mol. Biol., 429, 2017
|
|
5WH8
 | | Cellulase Cel5C_n | | Descriptor: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ... | | Authors: | Koropatkin, N.M, Pope, P.B, Naas, A.E. | | Deposit date: | 2017-07-15 | | Release date: | 2018-03-14 | | Last modified: | 2024-01-17 | | Method: | X-RAY DIFFRACTION (1.57 Å) | | Cite: | "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.
Microbiome, 6, 2018
|
|
2PT2
 | | Structure of FutA1 with Iron(II) | | Descriptor: | 1,2-ETHANEDIOL, FE (II) ION, Iron transport protein, ... | | Authors: | Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J. | | Deposit date: | 2007-05-07 | | Release date: | 2007-07-10 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
|
|
6MLY
 | | Bifunctional GH43-CE Bacteroides eggerthii, BACEGG_01304 | | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Bifunctional GH43-CE protein, ... | | Authors: | Koropatkin, N.M, Pereira, G.V, Cann, I. | | Deposit date: | 2018-09-28 | | Release date: | 2019-10-02 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021
|
|
6MOT
 | |
6MOU
 | |
6NE9
 | | Bacteroides intestinalis acetyl xylan esterase (BACINT_01039) | | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Koropatkin, N.M, Pereira, G.V, Cann, I. | | Deposit date: | 2018-12-17 | | Release date: | 2019-12-25 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.738 Å) | | Cite: | Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021
|
|
7JJN
 | | Eubacterium rectale Amy13B (EUR_01860) | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Cerqueira, F.M. | | Deposit date: | 2020-07-27 | | Release date: | 2021-06-23 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | The structures of the GH13_36 amylases from Eubacterium rectale and Ruminococcus bromii reveal subsite architectures that favor maltose production
Amylase, 4, 2020
|
|
7LSU
 | | Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriose | | Descriptor: | ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Brown, H.A, Kibler, R.D. | | Deposit date: | 2021-02-18 | | Release date: | 2021-07-14 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
J.Struct.Biol., 213, 2021
|
|
