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PDB: 121 件
7EDV
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BU of 7edv by Molmil
DNA duplex containing C-G-Au-C base triple
分子名称: DNA (5'-D(*GP*GP*AP*CP*CP*CP*CP*GP*GP*TP*CP*C)-3'), GOLD ION
著者Kondo, J, Iwase, E.
登録日2021-03-17
公開日2022-03-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献DNA duplex containing C-G-Au-C base triple
To Be Published
7EDT
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BU of 7edt by Molmil
RNA duplex containing CC mispairs
分子名称: RNA (5'-R(*GP*GP*AP*CP*UP*CP*CP*GP*GP*(5BU)P*CP*C)-3'), SODIUM ION, SPERMINE
著者Kondo, J, Tada, Y.
登録日2021-03-17
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献RNA duplex containing CC mispairs
To Be Published
7EFI
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BU of 7efi by Molmil
RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
分子名称: DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')
著者Kondo, J, Nagashima, M.
登録日2021-03-21
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7EEM
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BU of 7eem by Molmil
RNA bulged-G motif
分子名称: IRIDIUM ION, RNA (27-MER)
著者Kondo, J, Sekiguchi, S.
登録日2021-03-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.593 Å)
主引用文献RNA bulged-G motif
To Be Published
7EDU
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BU of 7edu by Molmil
RNA duplex containing C-Au-C base pair
分子名称: GOLD ION, RNA (5'-R(*GP*GP*AP*CP*UP*CP*GP*AP*CP*UP*CP*C)-3')
著者Kondo, J, Iwase, E.
登録日2021-03-17
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献RNA duplex containing C-Au-C base pair
To Be Published
7EDW
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BU of 7edw by Molmil
DNA duplex containing T-T base pairs in complex with Au(III)
分子名称: DNA (5'-D(*GP*GP*AP*CP*CP*TP*TP*GP*GP*TP*CP*C)-3'), GOLD ION
著者Kondo, J, Iwase, E.
登録日2021-03-17
公開日2022-03-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献DNA duplex containing T-T base pairs in complex with Au(III)
To Be Published
7EEN
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BU of 7een by Molmil
Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
分子名称: CALCIUM ION, DNA/RNA (27-MER)
著者Kondo, J, Sekiguchi, S.
登録日2021-03-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7EI5
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BU of 7ei5 by Molmil
GNRA tetraloop receptor motif composed of RNA and DNA
分子名称: COBALT (II) ION, DNA/RNA (35-MER), STRONTIUM ION
著者Kondo, J, Hayasaka, A.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献RNA GNRA tetraloop and tetraloop receptor motifs
To Be Published
7EI9
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BU of 7ei9 by Molmil
RNA kink-turn motif with pyrrolo cytosine
分子名称: RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3'), STRONTIUM ION
著者Kondo, J, Miyauchi, T.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献RNA kink-turn motif with pyrrolo cytosine
To Be Published
7EI7
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BU of 7ei7 by Molmil
RNA kink-turn motif with 2-aminopurine
分子名称: COBALT (II) ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Saisu, S.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献RNA kink-turn motif with 2-aminopurine
To Be Published
7EI6
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BU of 7ei6 by Molmil
GNRA tetraloop receptor motif composed of RNA and DNA
分子名称: DNA/RNA (35-MER), IRIDIUM (III) ION
著者Kondo, J, Hayasaka, A.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献RNA GNRA tetraloop and tetraloop receptor motifs
To Be Published
7EFH
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BU of 7efh by Molmil
RNA kink-turn motif
分子名称: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Nagashima, M.
登録日2021-03-21
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献RNA kink-turn motif
To Be Published
7EI8
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BU of 7ei8 by Molmil
RNA kink-turn motif with 2-aminopurine
分子名称: COBALT (II) ION, RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Saisu, S.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献RNA kink-turn motif with 2-aminopurine
To Be Published
7EIA
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BU of 7eia by Molmil
RNA kink-turn motif with pyrrolo cytosine
分子名称: POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Miyauchi, T.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献RNA kink-turn motif with pyrrolo cytosine
To Be Published
7F8Z
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BU of 7f8z by Molmil
RNA kink-turn motif with 2-aminopurine
分子名称: POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Miyauchi, T.
登録日2021-07-03
公開日2022-07-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献RNA kink-turn motif with 2-aminopurine
To Be Published
2RT8
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BU of 2rt8 by Molmil
Structure of metallo-dna in solution
分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
著者Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y.
登録日2013-06-18
公開日2014-03-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 42, 2014
2RVP
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BU of 2rvp by Molmil
Solution structure of DNA Containing Metallo-Base-Pair
分子名称: DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'), SILVER ION
著者Dairaku, T, Furuita, K, Sato, H, Sebera, J, Nakashima, K, Kondo, J, Yamanaka, D, Kondo, Y, Okamoto, I, Ono, A, Sychrovsky, V, Kojima, C, Tanaka, Y.
登録日2016-03-22
公開日2016-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.
Chemistry, 22, 2016
1UE4
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BU of 1ue4 by Molmil
Crystal structure of d(GCGAAAGC)
分子名称: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', MAGNESIUM ION
著者Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
登録日2003-05-09
公開日2004-03-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D, 60, 2004
1UE3
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BU of 1ue3 by Molmil
Crystal structure of d(GCGAAAGC) containing hexaamminecobalt
分子名称: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III), ...
著者Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
登録日2003-05-08
公開日2004-01-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Acta Crystallogr.,Sect.D, 60, 2004
2DQQ
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BU of 2dqq by Molmil
Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3')
著者Juan, E.C.M, Kondo, J, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-29
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DPC
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BU of 2dpc by Molmil
Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, COBALT (II) ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'), ...
著者Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-08
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DP7
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BU of 2dp7 by Molmil
Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, ...
著者Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-08
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DQP
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BU of 2dqp by Molmil
Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3')
著者Juan, E.C.M, Kondo, J, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-29
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DPB
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BU of 2dpb by Molmil
Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), POTASSIUM ION
著者Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-08
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DQO
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BU of 2dqo by Molmil
Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
分子名称: (6-AMINOHEXYL)CARBAMIC ACID, BARIUM ION, DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), ...
著者Juan, E.C.M, Kondo, J, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A.
登録日2006-05-29
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007

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件を2024-08-28に公開中

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