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PDB: 72 件
1SQJ
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Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH)
分子名称: oligoxyloglucan reducing-end-specific cellobiohydrolase
著者Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y.
登録日2004-03-19
公開日2004-07-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
1UA6
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Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex
分子名称: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
著者Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
登録日2003-02-28
公開日2004-03-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.Biol.Chem., 278, 2003
1UAC
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Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME
分子名称: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
著者Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
登録日2003-03-08
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.BIOL.CHEM., 278, 2003
1IC4
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC7
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
3A0F
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The crystal structure of Geotrichum sp. M128 xyloglucanase
分子名称: Xyloglucanase
著者Yaoi, K, Kondo, H, Hiyoshi, A, Noro, N, Sugimoto, H, Tsuda, S, Miyazaki, K.
登録日2009-03-16
公開日2009-09-08
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity
Febs J., 276, 2009
3A67
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Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme
分子名称: IG VH, anti-lysozyme, Lysozyme C, ...
著者Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
登録日2009-08-24
公開日2009-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
1IC5
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
3A6C
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Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme
分子名称: IG VH, anti-lysozyme, Lysozyme C, ...
著者Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
登録日2009-08-28
公開日2009-12-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
2EBS
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Crystal Structure Anaalysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH) D465N Mutant Complexed with a Xyloglucan Heptasaccharide
分子名称: Oligoxyloglucan reducing end-specific cellobiohydrolase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Yaoi, K, Kondo, H, Hiyoshi, A, Noro, N, Sugimoto, H, Miyazaki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-09
公開日2007-06-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Structural Basis for the Exo-mode of Action in GH74 Oligoxyloglucan Reducing End-specific Cellobiohydrolase.
J.Mol.Biol., 370, 2007
2ZIB
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Crystal structure analysis of calcium-independent type II antifreeze protein
分子名称: SULFATE ION, Type II antifreeze protein
著者Nishimiya, Y, Sato, R, Kondo, H, Noro, N, Sugimoto, H, Suzuki, M, Tsuda, S.
登録日2008-02-14
公開日2008-08-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
3A6B
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Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme
分子名称: IG VH, anti-lysozyme, Lysozyme C, ...
著者Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
登録日2009-08-28
公開日2009-12-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
1IQ8
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Crystal Structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii
分子名称: ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, MAGNESIUM ION, ZINC ION
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-07-09
公開日2002-05-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT7
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Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine
分子名称: Archaeosine tRNA-guanine transglycosylase, GUANINE, MAGNESIUM ION, ...
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-01-11
公開日2002-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT8
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Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0
分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ...
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-01-11
公開日2002-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
2Z4Q
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Crystal structure of a murine antibody FAB 528
分子名称: CADMIUM ION, CHLORIDE ION, anti egfr antibody fab, ...
著者Nakanishi, T, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I.
登録日2007-06-22
公開日2007-10-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
1S3S
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Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin], p47 protein
著者Dreveny, I, Kondo, H, Uchiyama, K, Shaw, A, Zhang, X, Freemont, P.S.
登録日2004-01-14
公開日2004-03-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47.
Embo J., 23, 2004
2YSS
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Crystal structure of Humanized HYHEL-10 FV mutant(HQ39KW47Y)-HEN lysozyme complex
分子名称: ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2007-04-03
公開日2008-04-08
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
3X0V
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Structure of L-lysine oxidase
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, L-lysine oxidase
著者Sano, T, Uchida, Y, Amano, M, Kawaguchi, T, Kondo, H, Inagaki, K, Imada, K.
登録日2014-10-22
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride.
J.Biochem., 157, 2015
1I42
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NMR STRUCTURE OF THE UBX DOMAIN FROM P47
分子名称: P47
著者Yuan, X, Shaw, A, Zhang, X, Kondo, H, Lally, J, Freemont, P.S, Matthews, S.
登録日2001-02-19
公開日2001-08-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly.
J.Mol.Biol., 311, 2001
1ISP
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Crystal structure of Bacillus subtilis lipase at 1.3A resolution
分子名称: GLYCEROL, lipase
著者Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S.
登録日2001-12-19
公開日2002-12-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
5XQP
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Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
分子名称: Ice-structuring protein, SULFATE ION
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQN
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Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form.
分子名称: Ice-structuring protein, SULFATE ION
著者Adachi, M, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form
分子名称: ACETATE ION, Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

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