2CZW
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![BU of 2czw by Molmil](/molmil-images/mine/2czw) | Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P | Descriptor: | 50S ribosomal protein L7Ae | Authors: | Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M. | Deposit date: | 2005-07-19 | Release date: | 2006-04-25 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3 Biochem.Biophys.Res.Commun., 343, 2006
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3QBA
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![BU of 3qba by Molmil](/molmil-images/mine/3qba) | Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Z-DNA (X-ray) | Descriptor: | Z-DNA | Authors: | Fenn, T.D, Schnieders, M.J, Mustyakimov, M, Wu, C, Langan, P, Pande, V.S, Brunger, A.T. | Deposit date: | 2011-01-12 | Release date: | 2011-03-02 | Last modified: | 2024-02-21 | Method: | NEUTRON DIFFRACTION (1.53 Å), X-RAY DIFFRACTION | Cite: | Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration. Structure, 19, 2011
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3VK9
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![BU of 3vk9 by Molmil](/molmil-images/mine/3vk9) | Crystal structure of delta-class glutathione transferase from silkmoth | Descriptor: | GLYCEROL, Glutathione S-transferase delta | Authors: | Kakuta, Y, Usuda, K, Higashiura, A, Suzuki, M, Nakagawa, A, Kimura, M, Yamamoto, K. | Deposit date: | 2011-11-10 | Release date: | 2012-10-03 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.001 Å) | Cite: | Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase Biochim.Biophys.Acta, 1820, 2012
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3VVU
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![BU of 3vvu by Molmil](/molmil-images/mine/3vvu) | Crystal structure of reconstructed bacterial ancestral NDK, Bac1 | Descriptor: | Nucleoside diphosphate kinase | Authors: | Nemoto, N, Miyazono, K, Kimura, M, Yokobori, S, Akanuma, S, Tanokura, M, Yamagishi, A. | Deposit date: | 2012-07-27 | Release date: | 2013-06-19 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Experimental evidence for the thermophilicity of ancestral life Proc.Natl.Acad.Sci.USA, 110, 2013
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3VVT
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![BU of 3vvt by Molmil](/molmil-images/mine/3vvt) | Crystal structure of reconstructed archaeal ancestral NDK, Arc1 | Descriptor: | Nucleoside diphosphate kinase | Authors: | Nemoto, N, Miyazono, K, Kimura, M, Yokobori, S, Akanuma, S, Tanokura, M, Yamagishi, A. | Deposit date: | 2012-07-27 | Release date: | 2013-06-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Experimental evidence for the thermophilicity of ancestral life Proc.Natl.Acad.Sci.USA, 110, 2013
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3VKK
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![BU of 3vkk by Molmil](/molmil-images/mine/3vkk) | Crystal Structure Of The Covalent Intermediate Of Human Cytosolic Beta-Glucosidase-mannose complex | Descriptor: | CHLORIDE ION, Cytosolic beta-glucosidase, GLYCEROL, ... | Authors: | Noguchi, J, Hayashi, Y, Okino, N, Ito, M, Kimura, M, Kakuta, Y. | Deposit date: | 2011-11-17 | Release date: | 2012-11-21 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis for inhibition mechanism of human cytosolic beta-glucosidase by monnoside To be Published
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2JJJ
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![BU of 2jjj by Molmil](/molmil-images/mine/2jjj) | Endothiapepsin in complex with a gem-diol inhibitor. | Descriptor: | ENDOTHIAPEPSIN, N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide, SULFATE ION | Authors: | Coates, L, Tuan, H.-F, Tomanicek, S.J, Kovalevsky, A, Mustyakimov, M, Erskine, P, Cooper, J. | Deposit date: | 2008-04-09 | Release date: | 2008-05-27 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | The Catalytic Mechanism of an Aspartic Proteinase Explored with Neutron and X-Ray Diffraction J.Am.Chem.Soc., 130, 2008
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2JJI
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![BU of 2jji by Molmil](/molmil-images/mine/2jji) | Endothiapepsin in complex with a gem-diol inhibitor. | Descriptor: | ENDOTHIAPEPSIN, N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide, SULFATE ION | Authors: | Coates, L, Tuan, H.-F, Tomanicek, S.J, Kovalevsky, A, Mustyakimov, M, Erskine, P, Cooper, J. | Deposit date: | 2008-04-09 | Release date: | 2008-05-27 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | The Catalytic Mechanism of an Aspartic Proteinase Explored with Neutron and X-Ray Diffraction J.Am.Chem.Soc., 130, 2008
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1IYB
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![BU of 1iyb by Molmil](/molmil-images/mine/1iyb) | |
2O4D
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![BU of 2o4d by Molmil](/molmil-images/mine/2o4d) | Crystal Structure of a hypothetical protein from Pseudomonas aeruginosa | Descriptor: | Hypothetical protein PA0269 | Authors: | McGrath, T.E, Battaile, K, Kisselman, G, Romanov, V, Wu-Brown, J, Virag, C, Ng, I, Kimber, M, Edwards, A.M, Pai, E.F, Chirgadze, N.Y. | Deposit date: | 2006-12-04 | Release date: | 2007-01-30 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal Structure of a hypothetical protein from Pseudomonas aeruginosa To be Published
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3AY8
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![BU of 3ay8 by Molmil](/molmil-images/mine/3ay8) | Glutathione S-transferase unclassified 2 from Bombyx mori | Descriptor: | GLYCEROL, Glutathione S-transferase | Authors: | Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K. | Deposit date: | 2011-05-02 | Release date: | 2011-09-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori Biochim.Biophys.Acta, 1810, 2011
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3BYC
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![BU of 3byc by Molmil](/molmil-images/mine/3byc) | Joint neutron and X-ray structure of diisopropyl fluorophosphatase. Deuterium occupancies are 1-Q, where Q is occupancy of H | Descriptor: | CALCIUM ION, Diisopropyl-fluorophosphatase | Authors: | Blum, M.-M, Mustyakimov, M, Ruterjans, H, Schoenborn, B.P, Langan, P, Chen, J.C.-H. | Deposit date: | 2008-01-15 | Release date: | 2009-01-27 | Last modified: | 2024-02-21 | Method: | NEUTRON DIFFRACTION (2.2 Å), X-RAY DIFFRACTION | Cite: | Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement. Proc.Natl.Acad.Sci.Usa, 106, 2009
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3AMK
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![BU of 3amk by Molmil](/molmil-images/mine/3amk) | Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L | Descriptor: | GLYCEROL, Os06g0726400 protein, PHOSPHATE ION | Authors: | Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M. | Deposit date: | 2010-08-20 | Release date: | 2011-09-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding. Glycobiology, 21, 2011
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3AML
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![BU of 3aml by Molmil](/molmil-images/mine/3aml) | Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, BETA-MERCAPTOETHANOL, ... | Authors: | Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M. | Deposit date: | 2010-08-20 | Release date: | 2011-09-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding. Glycobiology, 21, 2011
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1UAX
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![BU of 1uax by Molmil](/molmil-images/mine/1uax) | |
1VD1
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![BU of 1vd1 by Molmil](/molmil-images/mine/1vd1) | |
1VCZ
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![BU of 1vcz by Molmil](/molmil-images/mine/1vcz) | |
1VD3
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![BU of 1vd3 by Molmil](/molmil-images/mine/1vd3) | Ribonuclease NT in complex with 2'-UMP | Descriptor: | PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, RNase NGR3 | Authors: | Kawano, S, Kakuta, Y, Kimura, M. | Deposit date: | 2004-03-18 | Release date: | 2005-04-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates to be published
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2Z6V
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![BU of 2z6v by Molmil](/molmil-images/mine/2z6v) | Crystal structure of sulfotransferase STF9 from Mycobacterium avium | Descriptor: | PALMITIC ACID, Putative uncharacterized protein, SULFATE ION | Authors: | Hassain, M.M, Moriizumi, Y, Tanaka, S, Kimura, M, Kakuta, Y. | Deposit date: | 2007-08-09 | Release date: | 2008-09-09 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of sulfotransferase STF9 from Mycobacterium avium To be Published
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2Z7C
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![BU of 2z7c by Molmil](/molmil-images/mine/2z7c) | Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii | Descriptor: | ARGININE, DNA/RNA-binding protein Alba | Authors: | Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M. | Deposit date: | 2007-08-17 | Release date: | 2008-08-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biosci.Biotechnol.Biochem., 72, 2008
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2ZPO
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![BU of 2zpo by Molmil](/molmil-images/mine/2zpo) | Crystal Structure of Green Turtle Egg White Ribonuclease | Descriptor: | GLYCEROL, Ribonuclease, SULFATE ION | Authors: | Katekaew, S, Kakuta, Y, Torikata, T, Kimura, M, Yoneda, K, Araki, T. | Deposit date: | 2008-07-25 | Release date: | 2008-08-19 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure of Newly Found Green Turtle Egg White Ribonuclease To be Published
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2ZAE
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![BU of 2zae by Molmil](/molmil-images/mine/2zae) | Crystal structure of protein Ph1601p in complex with protein Ph1771p of archaeal ribonuclease P from Pyrococcus horikoshii OT3 | Descriptor: | GLYCEROL, NITRATE ION, Ribonuclease P protein component 1, ... | Authors: | Honda, T, Kakuta, Y, Kimura, M. | Deposit date: | 2007-10-04 | Release date: | 2008-10-14 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Structure of an archaeal homolog of the human protein complex Rpp21-Rpp29 that is a key core component for the assembly of active ribonuclease P. J.Mol.Biol., 384, 2008
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2VS2
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![BU of 2vs2 by Molmil](/molmil-images/mine/2vs2) | Neutron diffraction structure of endothiapepsin in complex with a gem- diol inhibitor. | Descriptor: | ENDOTHIAPEPSIN, N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide | Authors: | Coates, L, Tuan, H.-F, Tomanicek, S, Kovalevsky, A, Mustyakimov, M, Erskine, P, Cooper, J. | Deposit date: | 2008-04-17 | Release date: | 2008-05-27 | Last modified: | 2023-11-15 | Method: | NEUTRON DIFFRACTION (2 Å) | Cite: | The Catalytic Mechanism of an Aspartic Proteinase Explored with Neutron and X-Ray Diffraction J.Am.Chem.Soc., 130, 2008
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1V76
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![BU of 1v76 by Molmil](/molmil-images/mine/1v76) | |
2ZQ5
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![BU of 2zq5 by Molmil](/molmil-images/mine/2zq5) | |