1Q03
 
 | | Crystal structure of FGF-1, S50G/V51G mutant | | Descriptor: | Heparin-binding growth factor 1 | | Authors: | Kim, J, Blaber, M. | | Deposit date: | 2003-07-15 | | Release date: | 2004-07-27 | | Last modified: | 2023-08-16 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | Sequence swapping does not result in conformation swapping for the beta4/beta5 and beta8/beta9 beta-hairpin turns in human acidic fibroblast growth factor
Protein Sci., 14, 2005
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1K5V
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4QNV
 | | Crystal structure of Cx-SAM bound CmoB from E. coli in P6122 | | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, PHOSPHATE ION, tRNA (mo5U34)-methyltransferase | | Authors: | Kim, J, Toro, R, Bhosle, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) | | Deposit date: | 2014-06-18 | | Release date: | 2014-09-17 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.64 Å) | | Cite: | Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.
Nucleic Acids Res., 43, 2015
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4QNU
 | | Crystal structure of CmoB bound with Cx-SAM in P21212 | | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, PHOSPHATE ION, tRNA (mo5U34)-methyltransferase | | Authors: | Kim, J, Toro, R, Bhosle, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) | | Deposit date: | 2014-06-18 | | Release date: | 2014-09-17 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.
Nucleic Acids Res., 43, 2015
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4QNX
 | | Crystal structure of apo-CmoB | | Descriptor: | SULFATE ION, tRNA (mo5U34)-methyltransferase | | Authors: | Kim, J, Toro, R, Bhosle, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) | | Deposit date: | 2014-06-18 | | Release date: | 2014-09-17 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.619 Å) | | Cite: | Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.
Nucleic Acids Res., 43, 2015
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3PVC
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3PS9
 | | Crystal structure of MnmC from E. coli | | Descriptor: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, S-ADENOSYLMETHIONINE, ... | | Authors: | Kim, J, Almo, S.C. | | Deposit date: | 2010-12-01 | | Release date: | 2010-12-22 | | Last modified: | 2024-02-21 | | Method: | X-RAY DIFFRACTION (2.54 Å) | | Cite: | Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.
Bmc Struct.Biol., 13, 2013
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7E3S
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7E3Q
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7E3T
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7E3R
 | | Crystal structure of TrmL from Vibrio vulnificus | | Descriptor: | tRNA (cytidine(34)-2'-O)-methyltransferase | | Authors: | Kim, J, Son, J. | | Deposit date: | 2021-02-09 | | Release date: | 2022-02-16 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.79 Å) | | Cite: | Crystal structure of tRNA mehtyltransferase TrmL from Vibrio vulnificus
To be published
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3OF3
 | | Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae | | Descriptor: | 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type 1 | | Authors: | Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2010-08-13 | | Release date: | 2010-09-01 | | Last modified: | 2023-09-06 | | Method: | X-RAY DIFFRACTION (1.83 Å) | | Cite: | Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae
To be Published
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3OHP
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3RCM
 | | crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida | | Descriptor: | ACETATE ION, CITRIC ACID, TatD family hydrolase, ... | | Authors: | Kim, J, Toro, R, Hillerich, B, Seidel, R.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI) | | Deposit date: | 2011-03-31 | | Release date: | 2011-04-20 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida
TO BE PUBLISHED
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3OCC
 | | Crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis | | Descriptor: | 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type | | Authors: | Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2010-08-09 | | Release date: | 2010-11-10 | | Last modified: | 2023-09-06 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis
To be Published
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3SGL
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7EQJ
 | | crystal structure of E. coli Valine tRNA | | Descriptor: | MAGNESIUM ION, RNA (76-MER), SODIUM ION | | Authors: | Kim, J, Jeong, H. | | Deposit date: | 2021-05-03 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.043 Å) | | Cite: | Unique anticodon loop conformation with the flipped-out wobble nucleotide in the crystal structure of unbound tRNA Val .
Rna, 27, 2021
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7CT9
 | | Crystal structure of SAH bound CmoB from Vibrio Vulnificus | | Descriptor: | MALONATE ION, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ... | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CT8
 | | Crystal structure of apo CmoB from Vibrio Vulnificus | | Descriptor: | tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CTA
 | | Crystal structure of Cx-SAM bound CmoB from Vibrio vulnificus | | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, SULFATE ION, tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CNX
 | | Crystal structure of Apo PSD from E. coli (2.63 A) | | Descriptor: | Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.63 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNY
 | | Crystal structure of 8PE bound PSD from E. coli (2.12 A) | | Descriptor: | 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.12 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNZ
 | | Crystal structure of 10PE bound PSD from E. coli (2.70 A) | | Descriptor: | 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNW
 | | Crystal structure of Apo PSD from E. coli (1.90 A) | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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5ZIQ
 | | Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 4 | | Descriptor: | 1,2-ETHANEDIOL, Globin protein, PROTOPORPHYRIN IX CONTAINING FE, ... | | Authors: | Kim, J, Fukuda, Y, Inoue, T. | | Deposit date: | 2018-03-16 | | Release date: | 2019-01-02 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
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