Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 60 results

8I8Z
DownloadVisualize
BU of 8i8z by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, apo form
Descriptor: Glycosyltransferase, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I90
DownloadVisualize
BU of 8i90 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with UDP-glucose
Descriptor: Glycosyltransferase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I94
DownloadVisualize
BU of 8i94 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with luteolin
Descriptor: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Glycosyltransferase, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
1WEK
DownloadVisualize
BU of 1wek by Molmil
Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8
Descriptor: PHOSPHATE ION, hypothetical protein TT1465
Authors:Kukimoto-Niino, M, Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
Protein Sci., 13, 2004
3VU8
DownloadVisualize
BU of 3vu8 by Molmil
Metionyl-tRNA synthetase from Thermus thermophilus complexed with methionyl-adenylate analogue
Descriptor: Methionine--tRNA ligase, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE, ZINC ION
Authors:Konno, M, Kato-Murayama, M, Toma-Fukai, S, Uchikawa, E, Nureki, O, Yokoyama, S.
Deposit date:2012-06-22
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published
3VTA
DownloadVisualize
BU of 3vta by Molmil
Crystal Structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
Descriptor: Cucumisin, DIISOPROPYL PHOSPHONATE, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Murayama, K, Kato-Murayama, M, Hosaka, T, Sotokawauchi, A, Shirouzu, M, Arima, K, Yokoyama, S.
Deposit date:2012-05-23
Release date:2012-08-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
J.Mol.Biol., 423, 2012
1WDV
DownloadVisualize
BU of 1wdv by Molmil
Crystal structure of hypothetical protein APE2540
Descriptor: hypothetical protein APE2540
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-18
Release date:2004-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Acta Crystallogr.,Sect.F, 61, 2005
3WPS
DownloadVisualize
BU of 3wps by Molmil
crystal structure of the GAP domain of MgcRacGAP(S387D)
Descriptor: Rac GTPase-activating protein 1, SULFATE ION
Authors:Murayama, K, Kato-murayama, M, Shirouzu, M, Kitamura, T, Yokoyama, S.
Deposit date:2014-01-15
Release date:2015-01-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:crystal structure of the GAP domain of MgcRacGAP
To be Published
3WPQ
DownloadVisualize
BU of 3wpq by Molmil
crystal structure of the GAP domain of MgcRacGAP(S387A)
Descriptor: Rac GTPase-activating protein 1
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Kitamura, T, Yokoyama, S.
Deposit date:2014-01-15
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:crystal structure of the GAP domain of MgcRacGAP
To be Published
7EJL
DownloadVisualize
BU of 7ejl by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-2) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
7EJN
DownloadVisualize
BU of 7ejn by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-HKU1) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
7EJM
DownloadVisualize
BU of 7ejm by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-229E) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
7CD1
DownloadVisualize
BU of 7cd1 by Molmil
Crystal structure of inhibitory Smad, Smad7
Descriptor: CHLORIDE ION, Mothers against decapentaplegic homolog 7, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-06-18
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for inhibitory effects of Smad7 on TGF-beta family signaling.
J.Struct.Biol., 212, 2020
7DEV
DownloadVisualize
BU of 7dev by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora
Descriptor: Anthocyanin 5-aromatic acyltransferase
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-11-05
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
7DEX
DownloadVisualize
BU of 7dex by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA
Descriptor: Anthocyanin 5-aromatic acyltransferase, S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (E)-3-[3,4-bis(oxidanyl)phenyl]prop-2-enethioate
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-11-05
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
2DX1
DownloadVisualize
BU of 2dx1 by Molmil
Crystal structure of RhoGEF protein Asef
Descriptor: Rho guanine nucleotide exchange factor 4
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-22
Release date:2007-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism
J.Biol.Chem., 282, 2007
2CYE
DownloadVisualize
BU of 2cye by Molmil
Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8
Descriptor: COENZYME A, Putative thioesterase, ZINC ION
Authors:Hosaka, T, Kato-Murayama, M, Murayama, K, Kishishita, S, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2006-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta Crystallogr.,Sect.D, 65, 2009
2CWP
DownloadVisualize
BU of 2cwp by Molmil
Crystal structure of MetRS related protein from Pyrococcus horikoshii
Descriptor: MetRS related protein
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-23
Release date:2005-12-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of MetRS related protein from Pyrococcus horikoshii
To be Published
2Z0P
DownloadVisualize
BU of 2z0p by Molmil
Crystal structure of PH domain of Bruton's tyrosine kinase
Descriptor: (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE, Tyrosine-protein kinase BTK, ZINC ION
Authors:Murayama, K, Kato-Murayama, M, Mishima, C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of the Bruton's tyrosine kinase PH domain with phosphatidylinositol
Biochem.Biophys.Res.Commun., 377, 2008
2Z0Z
DownloadVisualize
BU of 2z0z by Molmil
Crystal structure of putative acetyltransferase
Descriptor: Putative uncharacterized protein TTHA1799, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Genetic Encoding of 3-Iodo-l-Tyrosine in Escherichia coli for Single-Wavelength Anomalous Dispersion Phasing in Protein Crystallography
Structure, 17, 2009
2ZXV
DownloadVisualize
BU of 2zxv by Molmil
Crystal structure of putative acetyltransferase from T. thermophilus HB8
Descriptor: Putative uncharacterized protein TTHA1799
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-01-08
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Genetic Encoding of 3-Iodo-l-Tyrosine in Escherichia coli for Single-Wavelength Anomalous Dispersion Phasing in Protein Crystallography
Structure, 17, 2009
2Z0R
DownloadVisualize
BU of 2z0r by Molmil
Crystal structure of hypothetical protein TTHA0547
Descriptor: CHLORIDE ION, Putative uncharacterized protein TTHA0547, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hypothetical protein TTHA0547
to be published
2Z10
DownloadVisualize
BU of 2z10 by Molmil
Crystal structure of putative acetyltransferase
Descriptor: Ribosomal-protein-alanine acetyltransferase
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Genetic Encoding of 3-Iodo-l-Tyrosine in Escherichia coli for Single-Wavelength Anomalous Dispersion Phasing in Protein Crystallography
Structure, 17, 2009
2Z0L
DownloadVisualize
BU of 2z0l by Molmil
Crystal structure of EBV-DNA polymerase accessory protein BMRF1
Descriptor: CHLORIDE ION, Early antigen protein D
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of Epstein-Barr virus DNA polymerase processivity factor BMRF1
J.Biol.Chem., 284, 2009
2Z0O
DownloadVisualize
BU of 2z0o by Molmil
Crystal structure of APPL1-BAR-PH domain
Descriptor: DCC-interacting protein 13-alpha
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of APPL1-BAR-PH domain
To be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon