6KX1
| Crystal structure of SN-101 mAb in complex with MUC1 glycopeptide | 分子名称: | 2-acetamido-2-deoxy-alpha-D-galactopyranose, Fab Fragment-SN-101-Heavy chain, Fab Fragment-SN-101-Light chain, ... | 著者 | Wakui, H, Tanaka, Y, Kato, K, Ose, T, Matsumoto, I, Min, Y, Tachibana, T, Nishimura, S.-I. | 登録日 | 2019-09-09 | 公開日 | 2020-07-29 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.773 Å) | 主引用文献 | A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes Chem Sci, 11, 2020
|
|
7EDA
| Structure of monomeric photosystem II | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Yu, H, Hamaguchi, T, Nakajima, Y, Kato, K, kawakami, K, Akita, F, Yonekura, K, Shen, J.R. | 登録日 | 2021-03-15 | 公開日 | 2021-07-07 | 最終更新日 | 2021-08-04 | 実験手法 | ELECTRON MICROSCOPY (2.78 Å) | 主引用文献 | Cryo-EM structure of monomeric photosystem II at 2.78 angstrom resolution reveals factors important for the formation of dimer. Biochim Biophys Acta Bioenerg, 1862, 2021
|
|
6L4T
| Structure of the peripheral FCPI from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Miyazaki, N, Akita, F, Shen, J.R. | 登録日 | 2019-10-21 | 公開日 | 2020-05-20 | 実験手法 | ELECTRON MICROSCOPY (2.6 Å) | 主引用文献 | Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom Nat Commun, 2020
|
|
6L4U
| Structure of the PSI-FCPI supercomplex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Miyazaki, N, Akita, F, Shen, J.R. | 登録日 | 2019-10-21 | 公開日 | 2020-05-20 | 実験手法 | ELECTRON MICROSCOPY (2.4 Å) | 主引用文献 | Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom Nat Commun, 2020
|
|
5GIJ
| Crystal structure of TDR-TDIF complex | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat receptor-like protein kinase TDR, ... | 著者 | Morita, J, Kato, K, Ishitani, R, Nishimasu, H, Nureki, O. | 登録日 | 2016-06-23 | 公開日 | 2016-08-24 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide Nat Commun, 7, 2016
|
|
5H7K
| Crystal structure of Elongation factor 2 GDP-form | 分子名称: | Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE | 著者 | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | 登録日 | 2016-11-18 | 公開日 | 2018-02-21 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.599 Å) | 主引用文献 | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
|
|
5H7L
| Complex of Elongation factor 2-50S ribosomal protein L12 | 分子名称: | 50S ribosomal protein L12, Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 著者 | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | 登録日 | 2016-11-18 | 公開日 | 2018-02-21 | 最終更新日 | 2018-05-02 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
|
|
5H7J
| Crystal structure of Elongation factor 2 | 分子名称: | Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 著者 | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | 登録日 | 2016-11-18 | 公開日 | 2018-02-21 | 最終更新日 | 2018-05-02 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
|
|
3WY2
| Crystal structure of alpha-glucosidase in complex with glucose | 分子名称: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | 著者 | Shen, X, Gai, Z, Kato, K, Yao, M. | 登録日 | 2014-08-18 | 公開日 | 2015-06-10 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.471 Å) | 主引用文献 | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
|
|
3WY1
| Crystal structure of alpha-glucosidase | 分子名称: | (3R,5R,7R)-octane-1,3,5,7-tetracarboxylic acid, Alpha-glucosidase, GLYCEROL, ... | 著者 | Shen, X, Gai, Z, Kato, K, Yao, M. | 登録日 | 2014-08-18 | 公開日 | 2015-06-10 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
|
|
3WY3
| Crystal structure of alpha-glucosidase mutant D202N in complex with glucose and glycerol | 分子名称: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | 著者 | Shen, X, Gai, Z, Kato, K, Yao, M. | 登録日 | 2014-08-18 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
|
|
3WY4
| Crystal structure of alpha-glucosidase mutant E271Q in complex with maltose | 分子名称: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | 著者 | Shen, X, Gai, Z, Kato, K, Yao, M. | 登録日 | 2014-08-18 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
|
|
7VD5
| Structure of C2S2M2-type PSII-FCPII supercomplex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... | 著者 | Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2021-09-06 | 公開日 | 2022-03-02 | 最終更新日 | 2022-09-14 | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | 主引用文献 | Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex Nat Commun, 13, 2022
|
|
7VD6
| Structure of S1M1-type FCPII complex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... | 著者 | Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2021-09-06 | 公開日 | 2022-03-02 | 最終更新日 | 2022-09-14 | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | 主引用文献 | Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex Nat Commun, 13, 2022
|
|
3AVE
| Crystal Structure of the Fucosylated Fc Fragment from Human Immunoglobulin G1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, ZINC ION | 著者 | Matsumiya, S, Yamaguchi, Y, Saito, J, Nagano, M, Sasakawa, H, Otaki, S, Satoh, M, Shitara, K, Kato, K. | 登録日 | 2011-03-04 | 公開日 | 2011-04-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Corrigendum to "Structural Comparison of Fucosylated and Nonfucosylated Fc Fragments of Human Immunoglobulin G1" [J. Mol. Biol. 386/3 (2007) 767-779] J.Mol.Biol., 408, 2011
|
|
5X6C
| Crystal structure of SepRS-SepCysE from Methanocaldococcus jannaschii | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, O-phosphoserine--tRNA(Cys) ligase, SULFATE ION, ... | 著者 | Chen, M, Kato, K, Yao, M. | 登録日 | 2017-02-21 | 公開日 | 2017-12-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.101 Å) | 主引用文献 | Structural basis for tRNA-dependent cysteine biosynthesis Nat Commun, 8, 2017
|
|
5XJE
| Crystal structure of fucosylated IgG1 Fc complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa | 分子名称: | CHLORIDE ION, Immunoglobulin gamma-1 heavy chain, Low affinity immunoglobulin gamma Fc region receptor III-A, ... | 著者 | Sakae, Y, Satoh, T, Yagi, H, Yanaka, S, Yamaguchi, T, Isoda, Y, Iida, S, Okamoto, Y, Kato, K. | 登録日 | 2017-05-01 | 公開日 | 2017-11-01 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fc gamma receptor IIIa. Sci Rep, 7, 2017
|
|
5X6B
| |
5XJF
| Crystal structure of fucosylated IgG Fc Y296W mutant complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | 著者 | Sakae, Y, Satoh, T, Yagi, H, Yanaka, S, Yamaguchi, T, Isoda, Y, Iida, S, Okamoto, Y, Kato, K. | 登録日 | 2017-05-01 | 公開日 | 2017-11-01 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fc gamma receptor IIIa. Sci Rep, 7, 2017
|
|
5Y9N
| Crystal structure of Pyrococcus furiosus PbaA (monoclinic form), an archaeal homolog of proteasome-assembly chaperone | 分子名称: | CHLORIDE ION, PbaA | 著者 | Yagi-Utsumi, M, Sikdar, A, Kozai, T, Inoue, R, Sugiyama, M, Uchihashi, T, Satoh, T, Kato, K. | 登録日 | 2017-08-26 | 公開日 | 2018-01-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation Protein Eng. Des. Sel., 31, 2018
|
|
2Z5C
| Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly | 分子名称: | Proteasome component PUP2, Protein YPL144W, Uncharacterized protein YLR021W | 著者 | Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K. | 登録日 | 2007-07-03 | 公開日 | 2008-01-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
|
|
2Z5E
| Crystal Structure of Proteasome Assembling Chaperone 3 | 分子名称: | Proteasome Assembling Chaperone 3 | 著者 | Okamoto, K, Kurimoto, E, Sakata, E, Suzuki, A, Yamane, T, Hirano, Y, Murata, S, Tanaka, K, Kato, K. | 登録日 | 2007-07-06 | 公開日 | 2008-02-19 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
|
|
2Z5B
| Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly | 分子名称: | Protein YPL144W, Uncharacterized protein YLR021W | 著者 | Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K. | 登録日 | 2007-07-03 | 公開日 | 2008-01-22 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
|
|
3ACP
| Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome | 分子名称: | WD repeat-containing protein YGL004C | 著者 | Kim, S, Saeki, Y, Suzuki, A, Takagi, K, Fukunaga, K, Yamane, T, Kato, K, Tanaka, K, Mizushima, T. | 登録日 | 2010-01-08 | 公開日 | 2010-03-16 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome J.Biol.Chem., 285, 2010
|
|
7DBT
| Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Mn2+-bound form) | 分子名称: | AMNP/g12777, MANGANESE (II) ION | 著者 | Yoshida, Y, Satoh, T, Ota, C, Tanaka, S, Horikawa, D.D, Tomita, M, Kato, K, Arakawa, K. | 登録日 | 2020-10-21 | 公開日 | 2021-10-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades. Bmc Genomics, 23, 2022
|
|