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PDB: 214 results

5VW5
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BU of 5vw5 by Molmil
Nicotinamide soak of Y316A mutant of corn root ferredoxin:NADP+ reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, MAGNESIUM ION, ...
Authors:Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
Deposit date:2017-05-21
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
5VWB
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BU of 5vwb by Molmil
Y316F mutant of corn root ferredoxin:NADP+ reductase in alternate space group
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, MAGNESIUM ION, ...
Authors:Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
Deposit date:2017-05-21
Release date:2017-08-23
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
5VW7
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BU of 5vw7 by Molmil
NADPH soak of Y316A mutant of corn root ferredoxin:NADP+ reductase
Descriptor: ACETATE ION, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, ...
Authors:Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
Deposit date:2017-05-21
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.608 Å)
Cite:High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
5VW3
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BU of 5vw3 by Molmil
NADP+ soak of Y316S mutant of corn root ferredoxin:NADP+ reductase
Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, ...
Authors:Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
Deposit date:2017-05-21
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.453 Å)
Cite:High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
5VW9
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BU of 5vw9 by Molmil
Nicotinamide soak of Y316S mutant of corn root ferredoxin:NADP+ reductase in alternate space group
Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, ...
Authors:Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
Deposit date:2017-05-21
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.894 Å)
Cite:High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
2R27
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BU of 2r27 by Molmil
Constitutively zinc-deficient mutant of human superoxide dismutase (SOD), C6A, H80S, H83S, C111S
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn]
Authors:Roberts, B.R, Getzoff, E.D, Karplus, P.A, Beckman, J.S, Tainer, J.A.
Deposit date:2007-08-24
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of zinc-deficient human superoxide dismutase and implications for ALS.
J.Mol.Biol., 373, 2007
2P2T
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BU of 2p2t by Molmil
Crystal structure of dynein light chain LC8 bound to residues 123-138 of intermediate chain IC74
Descriptor: ACETATE ION, Dynein intermediate chain peptide, Dynein light chain 1, ...
Authors:Benison, G, Karplus, P.A, Barbar, E.
Deposit date:2007-03-07
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and dynamics of LC8 complexes with KXTQT-motif peptides: swallow and dynein intermediate chain compete for a common site.
J.Mol.Biol., 371, 2007
2RGH
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BU of 2rgh by Molmil
Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase
Descriptor: Alpha-Glycerophosphate Oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Colussi, T, Boles, W, Mallett, T.C, Karplus, P.A, Claiborne, A.
Deposit date:2007-10-01
Release date:2008-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase.
Biochemistry, 47, 2008
4L0U
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BU of 4l0u by Molmil
Crystal structure of Plasmodium vivax Prx1a
Descriptor: 2-Cys peroxiredoxin, putative, ACETATE ION
Authors:Gretes, M.C, Karplus, P.A.
Deposit date:2013-06-01
Release date:2016-11-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Observed octameric assembly of a Plasmodium yoelii peroxiredoxin can be explained by the replacement of native "ball-and-socket" interacting residues by an affinity tag.
Protein Sci., 22, 2013
4L0W
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BU of 4l0w by Molmil
Plasmodium yoelii Prx1a modified at the N-terminus forms an artifactual octamer
Descriptor: ACETATE ION, SULFATE ION, Thioredoxin peroxidase 1
Authors:Gretes, M.C, Karplus, P.A.
Deposit date:2013-06-01
Release date:2016-11-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Observed octameric assembly of a Plasmodium yoelii peroxiredoxin can be explained by the replacement of native "ball-and-socket" interacting residues by an affinity tag.
Protein Sci., 22, 2013
4ND7
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BU of 4nd7 by Molmil
Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the closed form
Descriptor: BETA-MERCAPTOETHANOL, SODIUM ION, Tyrosine--tRNA ligase
Authors:Cooley, R.B, Driggers, C.M, Karplus, P.A, Mehl, R.A.
Deposit date:2013-10-25
Release date:2014-03-19
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Improved Second-Generation 3-Nitro-tyrosine tRNA Synthetases.
Biochemistry, 53, 2014
4NDA
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BU of 4nda by Molmil
Crystal structure of 3-nitro-tyrosine tRNA synthetase (5B) bound to 3-nitro-tyrosine
Descriptor: GLYCEROL, META-NITRO-TYROSINE, SODIUM ION, ...
Authors:Cooley, R.B, Driggers, C.M, Karplus, P.A, Mehl, R.A.
Deposit date:2013-10-25
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Improved Second-Generation 3-Nitro-tyrosine tRNA Synthetases.
Biochemistry, 53, 2014
4MAB
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BU of 4mab by Molmil
Resolving Cys to Ala variant of Salmonella Alkyl Hydroperoxide Reductase C in its substrate-ready conformation
Descriptor: Alkyl hydroperoxide reductase subunit C, CHLORIDE ION, GLYCEROL, ...
Authors:Perkins, A, Nelson, K.J, Williams, J.R, Poole, L.B, Karplus, P.A.
Deposit date:2013-08-15
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The sensitive balance between the fully folded and locally unfolded conformations of a model peroxiredoxin.
Biochemistry, 52, 2013
4MA9
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BU of 4ma9 by Molmil
Wild type Salmonella Alkyl Hydroperoxide Reductase C in its substrate-ready conformation
Descriptor: Alkyl hydroperoxide reductase subunit C, CHLORIDE ION, GLYCEROL, ...
Authors:Perkins, A, Karplus, P.A.
Deposit date:2013-08-15
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The sensitive balance between the fully folded and locally unfolded conformations of a model peroxiredoxin.
Biochemistry, 52, 2013
4ND6
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BU of 4nd6 by Molmil
Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the open form
Descriptor: GLYCEROL, Tyrosine-tRNA ligase
Authors:Cooley, R.B, Driggers, C.M, Karplus, P.A, Mehl, R.A.
Deposit date:2013-10-25
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Improved Second-Generation 3-Nitro-tyrosine tRNA Synthetases.
Biochemistry, 53, 2014
3E2B
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BU of 3e2b by Molmil
Crystal structure of Dynein Light chain LC8 in complex with a peptide derived from Swallow
Descriptor: ACETATE ION, Dynein light chain 1, cytoplasmic, ...
Authors:Benison, G, Barbar, E, Karplus, P.A.
Deposit date:2008-08-05
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The interplay of ligand binding and quaternary structure in the diverse interactions of dynein light chain LC8.
J.Mol.Biol., 384, 2008
3GRS
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BU of 3grs by Molmil
REFINED STRUCTURE OF GLUTATHIONE REDUCTASE AT 1.54 ANGSTROMS RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE, PHOSPHATE ION
Authors:Schulz, G.E, Karplus, P.A.
Deposit date:1988-02-05
Release date:1988-04-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Refined structure of glutathione reductase at 1.54 A resolution.
J.Mol.Biol., 195, 1987
3I43
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BU of 3i43 by Molmil
Escherichia coli Thiol peroxidase (Tpx) wild type disulfide form
Descriptor: CITRIC ACID, Thiol peroxidase
Authors:Hall, A, Karplus, P.A.
Deposit date:2009-07-01
Release date:2009-10-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural changes common to catalysis in the Tpx peroxiredoxin subfamily.
J.Mol.Biol., 393, 2009
3L9K
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BU of 3l9k by Molmil
Insights into dynein assembly from a dynein intermediate chain-light chain roadblock structure
Descriptor: Dynein intermediate chain, cytosolic, RE64145p
Authors:Hall, J, Karplus, P.A, Barbar, E.
Deposit date:2010-01-05
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights into dynein assembly from a dynein intermediate chain-light chain roadblock structure
To be Published
3HVS
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BU of 3hvs by Molmil
Escherichia coli Thiol peroxidase (Tpx) wild type disulfide form
Descriptor: CITRIC ACID, Thiol peroxidase
Authors:Hall, A, Karplus, P.A.
Deposit date:2009-06-16
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural changes common to catalysis in the Tpx peroxiredoxin subfamily.
J.Mol.Biol., 393, 2009
3HVV
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BU of 3hvv by Molmil
Escherichia coli Thiol peroxidase (Tpx) peroxidatic cysteine to serine mutant (C61S)
Descriptor: Thiol peroxidase
Authors:Hall, A, Sankaran, B, Karplus, P.A.
Deposit date:2009-06-16
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural changes common to catalysis in the Tpx peroxiredoxin subfamily.
J.Mol.Biol., 393, 2009
3L7H
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BU of 3l7h by Molmil
Insights into dynein assembly from a dynein intermediate chain light chain Roadblock structure
Descriptor: RE64145p
Authors:Hall, J, Karplus, P.A, Barbar, E.
Deposit date:2009-12-28
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Insights into dynein assembly from a dynein intermediate chain light chain Roadblock structure
To be Published
3LO8
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BU of 3lo8 by Molmil
Crystal Structure of The Oxidized Form of Ferredoxin:NADP+ Reductase From Maize Root at 1.05 Angstroms
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, SODIUM ION
Authors:Faber, H.R, Karplus, P.A.
Deposit date:2010-02-03
Release date:2010-03-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.
Acta Crystallogr.,Sect.D, 66, 2010
5I0U
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BU of 5i0u by Molmil
Incompletely interpreted D-cysteine soak of Cysteine Dioxygenase at pH 7.0
Descriptor: Cysteine dioxygenase type 1, D-CYSTEINE, FE (III) ION
Authors:Kean, K.M, Driggers, C.M, Karplus, P.A.
Deposit date:2016-02-04
Release date:2017-02-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016
5I0R
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BU of 5i0r by Molmil
D-cysteine bound C93A mutant of Cysteine Dioxygenase at pH 8
Descriptor: CHLORIDE ION, Cysteine dioxygenase type 1, D-CYSTEINE, ...
Authors:Kean, K.M, Driggers, C.M, Karplus, P.A.
Deposit date:2016-02-04
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
J. Mol. Biol., 428, 2016

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