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PDB: 123 results

7BZ1
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BU of 7bz1 by Molmil
The mutant variant of PNGM-1. H96 was substituted for alanine to study metal coordination.
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2020-04-26
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BZI
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BU of 7bzi by Molmil
The mutant variant of PNGM-1. H91 was substituted for alanine to study metal coordination.
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2020-04-28
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BZ3
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BU of 7bz3 by Molmil
The mutant variant of PNGM-1. H257 was substituted for alanine to study substrate binding.
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2020-04-26
Release date:2021-04-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
3E5N
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BU of 3e5n by Molmil
Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331
Descriptor: D-alanine-D-alanine ligase A
Authors:Doan, T.N.T, Kim, J.K, Kim, H.S, Ahn, Y.J, Kim, J.G, Lee, B.M, Kang, L.W.
Deposit date:2008-08-14
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331
To be published
3JRU
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BU of 3jru by Molmil
Crystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331
Descriptor: CALCIUM ION, CARBONATE ION, Probable cytosol aminopeptidase, ...
Authors:Natarajan, S, Huynh, K.-H, Kang, L.W.
Deposit date:2009-09-08
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331
to be published
3K89
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BU of 3k89 by Molmil
Structure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol
Descriptor: GLYCEROL, Malonyl CoA-ACP transacylase
Authors:Natarajan, S, Jung, J.W, Kang, L.W.
Deposit date:2009-10-14
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol
To be published
3PH3
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BU of 3ph3 by Molmil
Clostridium thermocellum Ribose-5-Phosphate Isomerase B with d-ribose
Descriptor: D-ribose, Ribose-5-phosphate isomerase
Authors:Jung, J, Kim, J.K, Yeom, S.J, Ahn, Y.J, Oh, D.K, Kang, L.W.
Deposit date:2010-11-03
Release date:2011-06-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics.
Appl.Microbiol.Biotechnol., 90, 2011
3FK5
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BU of 3fk5 by Molmil
Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH (Xoo4209) from Xanthomonas oryzae pv. oryzae KACC10331
Descriptor: 3-oxoacyl-synthase III
Authors:Natarajan, S, Huynh, K.-H, Kang, L.W.
Deposit date:2008-12-16
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH (Xoo4209) from Xanthomonas oryzae pv. oryzae KACC10331
To be Published
4FXB
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BU of 4fxb by Molmil
Crystal structure of CYP105N1 from Streptomyces coelicolor: a cytochrome P450 oxidase in the coelibactin siderophore biosynthetic pathway
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Putative cytochrome P450
Authors:Hong, M.K, Lim, Y.R, Kim, J.K, Kim, D.H, Kang, L.W.
Deposit date:2012-07-03
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of cytochrome P450 CYP105N1 from Streptomyces coelicolor, an oxidase in the coelibactin siderophore biosynthetic pathway
Arch.Biochem.Biophys., 528, 2012
4IXZ
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BU of 4ixz by Molmil
Native structure of cystathionine gamma lyase (XometC) from xanthomonas oryzae pv. oryzae at pH 9.0
Descriptor: BETA-MERCAPTOETHANOL, BICARBONATE ION, Cystathionine gamma-lyase-like protein, ...
Authors:Ngo, H.P.T, Kim, J.K, Kang, L.W.
Deposit date:2013-01-28
Release date:2014-01-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:PLP undergoes conformational changes during the course of an enzymatic reaction.
Acta Crystallogr.,Sect.D, 70, 2014
4IYO
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BU of 4iyo by Molmil
Crystal structure of cystathionine gamma lyase from Xanthomonas oryzae pv. oryzae (XometC) in complex with E-site serine, A-site serine, A-site external aldimine structure with aminoacrylate and A-site iminopropionate intermediates
Descriptor: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, AMINO-ACRYLATE, Cystathionine gamma-lyase-like protein, ...
Authors:Ngo, H.P.T, Kim, J.K, Kang, L.W.
Deposit date:2013-01-29
Release date:2014-01-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:PLP undergoes conformational changes during the course of an enzymatic reaction.
Acta Crystallogr.,Sect.D, 70, 2014
4IY7
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BU of 4iy7 by Molmil
crystal structure of cystathionine gamma lyase (XometC) from Xanthomonas oryzae pv. oryzae in complex with E-site serine, A-site external aldimine structure with serine and A-site external aldimine structure with aminoacrylate intermediates
Descriptor: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, Cystathionine gamma-lyase-like protein, ...
Authors:Ngo, H.P.T, Kim, J.K, Kang, L.W.
Deposit date:2013-01-28
Release date:2014-01-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:PLP undergoes conformational changes during the course of an enzymatic reaction.
Acta Crystallogr.,Sect.D, 70, 2014
4IXS
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BU of 4ixs by Molmil
Native structure of xometc at ph 5.2
Descriptor: CARBONATE ION, Cystathionine gamma-lyase-like protein, GLYCEROL
Authors:Ngo, H.P.T, Kim, J.K, Kang, L.W.
Deposit date:2013-01-28
Release date:2014-01-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:PLP undergoes conformational changes during the course of an enzymatic reaction.
Acta Crystallogr.,Sect.D, 70, 2014
4L1K
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BU of 4l1k by Molmil
Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with AMPPNP
Descriptor: D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Doan, T.T.N, Kim, J.K, Kang, L.W.
Deposit date:2013-06-03
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of d-alanine-d-alanine ligase from Xanthomonas oryzae pv. oryzae alone and in complex with nucleotides
Arch.Biochem.Biophys., 545C, 2014
3RFC
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BU of 3rfc by Molmil
Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase 1, MAGNESIUM ION
Authors:Doan, T.T.N, Kim, J.K, Ahn, Y.J, Kang, L.W.
Deposit date:2011-04-06
Release date:2011-05-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP
to be published
3R97
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BU of 3r97 by Molmil
Crystal structure of malonyl-CoA:acyl carrier protein transacylase (FabD), Xoo0880, from Xanthomonas oryzae pv. oryzae KACC10331
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Malonyl CoA-ACP transacylase
Authors:Natarajan, S, Jung, J.W, Kang, L.W.
Deposit date:2011-03-25
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of malonyl-CoA:acyl carrier protein transacylase (FabD), Xoo0880, from Xanthomonas oryzae pv. oryzae KACC10331
To be Published
3R5F
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BU of 3r5f by Molmil
Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanine ligase 1, MAGNESIUM ION
Authors:Doan, T.T.N, Kim, J.K, Kang, L.W.
Deposit date:2011-03-18
Release date:2011-05-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ATP
To be Published
4NT8
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BU of 4nt8 by Molmil
Formyl-methionine-alanine complex structure of peptide deformylase from Xanthomoonas oryzae pv. oryzae
Descriptor: ACETATE ION, ALANINE, CADMIUM ION, ...
Authors:Ngo, H.P.T, Kim, J.K, Kang, L.W.
Deposit date:2013-12-02
Release date:2014-12-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate complex structure of Xoo1075, a peptide deformylase, from Xanthomonas oryzae pv. oryzae
To be Published
4NFX
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BU of 4nfx by Molmil
Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Descriptor: Putative Nudix hydrolase ymfB
Authors:Hong, M.K, Kim, J.K, Kang, L.W.
Deposit date:2013-11-01
Release date:2014-05-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Acta Crystallogr.,Sect.D, 70, 2014
4ME6
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BU of 4me6 by Molmil
Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION
Authors:Doan, T.T.N, Kim, J.K, Ahn, Y.J, Lee, B.M, Kang, L.W.
Deposit date:2013-08-25
Release date:2014-02-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of d-alanine-d-alanine ligase from Xanthomonas oryzae pv. oryzae alone and in complex with nucleotides
Arch.Biochem.Biophys., 545C, 2014
7WI1
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BU of 7wi1 by Molmil
The mutant variant of PNGM-1, H93 was substituuted for alanine to study metal coordination
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2022-01-01
Release date:2023-01-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
4NFW
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BU of 4nfw by Molmil
Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Descriptor: MANGANESE (II) ION, Putative Nudix hydrolase ymfB, SULFATE ION
Authors:Hong, M.K, Kim, J.K, Kang, L.W.
Deposit date:2013-11-01
Release date:2014-05-14
Last modified:2015-03-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Acta Crystallogr.,Sect.D, 70, 2014
5GK4
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BU of 5gk4 by Molmil
Native structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 2.0 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, Fructose-bisphosphate aldolase class 2, GLYCEROL, ...
Authors:Tran, T.H, Huynh, K.H, Ho, T.H, Kang, L.W.
Deposit date:2016-07-03
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 2.0 Angstrom resolution
To Be Published
5GTK
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BU of 5gtk by Molmil
NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
Descriptor: Betaine-aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION
Authors:Ngo, H.P.T, Hong, S.H, Ho, T.H, Oh, D.K, Kang, L.W.
Deposit date:2016-08-21
Release date:2017-09-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of aldehyde dehydrogenase from Bacillus cereus having atypical bidirectional oxidizing and reducing activities for all-trans-retinal
To Be Published
5GK5
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BU of 5gk5 by Molmil
Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 1.9 angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, Fructose-bisphosphate aldolase class 2, GLYCEROL, ...
Authors:Tran, T.H, Huynh, K.H, Ho, T.H, Kang, L.W.
Deposit date:2016-07-03
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Apo structure of fructose 1,6-bisphosphate aldolase from Escherichia coli at 1.9 angstrom resolution
To Be Published

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PDB entries from 2024-07-17

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