4ED8
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![BU of 4ed8 by Molmil](/molmil-images/mine/4ed8) | Human DNA polymerase eta - DNA ternary complex: Reaction in the TG crystal at pH 7.0, Normal translocation | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*G)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-27 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.521 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4XLZ
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![BU of 4xlz by Molmil](/molmil-images/mine/4xlz) | N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the presence of cadmium | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, CHLORIDE ION, ... | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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4XM1
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![BU of 4xm1 by Molmil](/molmil-images/mine/4xm1) | N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the presence of cadmium | 分子名称: | CADMIUM ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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4ECQ
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![BU of 4ecq by Molmil](/molmil-images/mine/4ecq) | Human DNA polymerase eta- DNA ternary complex: AT crystal at pH6.8(K+ MES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED1
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![BU of 4ed1 by Molmil](/molmil-images/mine/4ed1) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.0 (Na+ MES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.806 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECT
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![BU of 4ect by Molmil](/molmil-images/mine/4ect) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 140 sec | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.795 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED0
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![BU of 4ed0 by Molmil](/molmil-images/mine/4ed0) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.8 (Na+ MES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.653 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECS
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![BU of 4ecs by Molmil](/molmil-images/mine/4ecs) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 80 sec | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.951 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECX
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![BU of 4ecx by Molmil](/molmil-images/mine/4ecx) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 300 sec | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.744 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECW
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![BU of 4ecw by Molmil](/molmil-images/mine/4ecw) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 250 sec | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.896 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECZ
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![BU of 4ecz by Molmil](/molmil-images/mine/4ecz) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.5 (Na+ MES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.834 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ECU
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![BU of 4ecu by Molmil](/molmil-images/mine/4ecu) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 200 sec | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.949 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED6
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![BU of 4ed6 by Molmil](/molmil-images/mine/4ed6) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation | 分子名称: | DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-27 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.211 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED2
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![BU of 4ed2 by Molmil](/molmil-images/mine/4ed2) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.2 (Na+ HEPES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.711 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED3
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![BU of 4ed3 by Molmil](/molmil-images/mine/4ed3) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.5 (Na+ HEPES) with 1 Ca2+ ion | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | 著者 | Nakamura, T, Zhao, Y, Yang, W. | 登録日 | 2012-03-26 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.791 Å) | 主引用文献 | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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2ZOE
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![BU of 2zoe by Molmil](/molmil-images/mine/2zoe) | HA3 subcomponent of Clostridium botulinum type C progenitor toxin, complex with N-acetylneuramic acid | 分子名称: | Hemagglutinin components HA3, N-acetyl-beta-neuraminic acid | 著者 | Nakamura, T, Kotani, M, Tonozuka, T, Ide, A, Oguma, K, Nishikawa, A. | 登録日 | 2008-05-09 | 公開日 | 2008-12-02 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal Structure of the HA3 Subcomponent of Clostridium botulinum Type C Progenitor Toxin J.Mol.Biol., 385, 2009
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2ZCT
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![BU of 2zct by Molmil](/molmil-images/mine/2zct) | Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate | 分子名称: | Probable peroxiredoxin | 著者 | Nakamura, T, Hagihara, Y, Abe, M, Inoue, T, Yamamoto, T, Matsumura, H. | 登録日 | 2007-11-12 | 公開日 | 2008-05-27 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate Proc.Natl.Acad.Sci.Usa, 105, 2008
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3AJ6
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![BU of 3aj6 by Molmil](/molmil-images/mine/3aj6) | HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II | 分子名称: | 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component | 著者 | Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A. | 登録日 | 2010-05-24 | 公開日 | 2011-06-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | 主引用文献 | Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin Arch.Biochem.Biophys., 512, 2011
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6IU1
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![BU of 6iu1 by Molmil](/molmil-images/mine/6iu1) | |
3AJ5
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![BU of 3aj5 by Molmil](/molmil-images/mine/3aj5) | HA1 (HA33) subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II | 分子名称: | 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component | 著者 | Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A. | 登録日 | 2010-05-24 | 公開日 | 2011-06-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin Arch.Biochem.Biophys., 512, 2011
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7EF9
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![BU of 7ef9 by Molmil](/molmil-images/mine/7ef9) | Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form II) | 分子名称: | Adenine DNA glycosylase, DNA (5'-D(*AP*TP*GP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*CP*CP*CP*(3DR)P*GP*TP*CP*TP*C)-3'), ... | 著者 | Nakamura, T, Nakabeppu, Y, Yamagata, Y. | 登録日 | 2021-03-21 | 公開日 | 2021-06-23 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.97 Å) | 主引用文献 | Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer. Nucleic Acids Res., 49, 2021
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7EF8
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![BU of 7ef8 by Molmil](/molmil-images/mine/7ef8) | Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form I) | 分子名称: | Adenine DNA glycosylase, DNA (5'-D(*TP*AP*GP*TP*CP*CP*CP*(3DR)P*GP*TP*CP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*CP*T)-3'), ... | 著者 | Nakamura, T, Nakabeppu, Y, Yamagata, Y. | 登録日 | 2021-03-21 | 公開日 | 2021-06-23 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | 主引用文献 | Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer. Nucleic Acids Res., 49, 2021
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3A5W
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![BU of 3a5w by Molmil](/molmil-images/mine/3a5w) | Peroxiredoxin (wild type) from Aeropyrum pernix K1 (reduced form) | 分子名称: | Probable peroxiredoxin | 著者 | Nakamura, T, Kado, Y, Yamaguchi, T, Matsumura, H, Ishikawa, K, Inoue, T. | 登録日 | 2009-08-12 | 公開日 | 2009-10-27 | 最終更新日 | 2014-01-22 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem., 147, 2010
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3A2W
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![BU of 3a2w by Molmil](/molmil-images/mine/3a2w) | Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form) | 分子名称: | GLYCEROL, PEROXIDE ION, Probable peroxiredoxin | 著者 | Nakamura, T, Kado, Y, Yamaguchi, F, Matsumura, H, Ishikawa, K, Inoue, T. | 登録日 | 2009-06-04 | 公開日 | 2009-10-27 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem., 147, 2010
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3A2V
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![BU of 3a2v by Molmil](/molmil-images/mine/3a2v) | Peroxiredoxin (C207S) from Aeropyrum pernix K1 complexed with hydrogen peroxide | 分子名称: | PEROXIDE ION, Probable peroxiredoxin | 著者 | Nakamura, T, Kado, Y, Yamaguchi, F, Ishikawa, K, Matsumura, H, Inoue, T. | 登録日 | 2009-06-04 | 公開日 | 2009-10-27 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem., 147, 2010
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