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PDB: 72 件
1FIY
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THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION
分子名称: ASPARTIC ACID, PHOSPHOENOLPYRUVATE CARBOXYLASE
著者Kai, Y, Matsumura, H, Inoue, T, Terada, K, Nagara, Y, Yoshinaga, T, Kihara, A, Izui, K.
登録日1998-05-02
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition.
Proc.Natl.Acad.Sci.USA, 96, 1999
2E7A
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TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity
分子名称: Tumor necrosis factor
著者Mukai, Y, Yamagata, Y, Tsutsumi, Y.
登録日2007-01-09
公開日2007-11-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Creation and X-ray structure analysis of the tumor necrosis factor receptor-1-selective mutant of a tumor necrosis factor-alpha antagonist
J.Biol.Chem., 283, 2008
2ZPX
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TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity; R1antTNF-T8
分子名称: Tumor necrosis factor
著者Mukai, Y, Nakamura, T, Yamagata, Y, Tsutsumi, Y.
登録日2008-07-29
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Fast binding kinetics and conserved 3D structure underlie the antagonistic activity of mutant TNF: useful information for designing artificial proteo-antagonists
J.Biochem., 146, 2009
2ZJC
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TNFR1 selectve TNF mutant; R1-6
分子名称: GLYCEROL, Tumor necrosis factor
著者Mukai, Y, Yamagata, Y, Tsutsumi, Y.
登録日2008-03-05
公開日2009-01-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Function Relationship of Tumor Necrosis Factor (TNF) and Its Receptor Interaction Based on 3D Structural Analysis of a Fully Active TNFR1-Selective TNF Mutant
J.Mol.Biol., 385, 2009
3ALQ
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Crystal structure of TNF-TNFR2 complex
分子名称: COBALT (II) ION, Tumor necrosis factor, Tumor necrosis factor receptor superfamily member 1B
著者Mukai, Y, Nakamura, T, Yamagata, Y, Tsutsumi, Y.
登録日2010-08-06
公開日2010-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Solution of the Structure of the TNF-TNFR2 Complex
Sci.Signal., 3, 2010
3AAD
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BU of 3aad by Molmil
Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
分子名称: Histone chaperone ASF1A, SULFATE ION, Transcription initiation factor TFIID subunit 1
著者Akai, Y, Adachi, N, Hayashi, Y, Eitoku, M, Sano, N, Natsume, R, Kudo, N, Tanokura, M, Senda, T, Horikoshi, M.
登録日2009-11-16
公開日2010-04-28
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
Proc.Natl.Acad.Sci.USA, 107, 2010
2EMT
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BU of 2emt by Molmil
Crystal Structure Analysis of the radixin FERM domain complexed with adhesion molecule PSGL-1
分子名称: P-selectin glycoprotein ligand 1, Radixin
著者Takai, Y, Kitano, K, Terawaki, S, Maesaki, R, Hakoshima, T.
登録日2007-03-28
公開日2008-03-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of PSGL-1 binding to ERM proteins
Genes Cells, 12, 2007
2EMS
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Crystal Structure Analysis of the radixin FERM domain complexed with adhesion molecule CD43
分子名称: Leukosialin, Radixin
著者Takai, Y, Kitano, K, Terawaki, S, Maesaki, R, Hakoshima, T.
登録日2007-03-28
公開日2008-04-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis of the cytoplasmic tail of adhesion molecule CD43 and its binding to ERM proteins
J.Mol.Biol., 381, 2008
2ZJ4
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Isomerase domain of human glucose:fructose-6-phosphate amidotransferase
分子名称: 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1
著者Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H.
登録日2008-02-29
公開日2009-01-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes
Febs Lett., 583, 2009
2ZJ3
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Isomerase domain of human glucose:fructose-6-phosphate amidotransferase
分子名称: 6-O-phosphono-alpha-D-glucopyranose, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1
著者Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H.
登録日2008-02-29
公開日2009-01-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes
Febs Lett., 583, 2009
1PMY
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REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION
分子名称: COPPER (II) ION, PSEUDOAZURIN
著者Inoue, T, Kai, Y, Harada, S, Kasai, N, Ohshiro, Y, Suzuki, S, Kohzuma, T, Tobari, J.
登録日1994-01-28
公開日1994-07-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 50, 1994
1QB4
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BU of 1qb4 by Molmil
CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE
分子名称: ASPARTIC ACID, MANGANESE (II) ION, PHOSPHOENOLPYRUVATE CARBOXYLASE
著者Matsumura, H, Terada, M, Shirakata, S, Inoue, T, Yoshinaga, T, Izui, K, Kai, Y.
登録日1999-04-30
公開日2002-05-01
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli
FEBS Lett., 458, 1999
2KSV
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The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum
分子名称: Protein-glutaminase
著者Kumeta, H, Miwa, N, Ogura, K, Kai, Y, Mizukoshi, T, Shimba, N, Suzuki, E, Inagaki, F.
登録日2010-01-14
公開日2010-02-16
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.
J.Biomol.Nmr, 46, 2010
2YVK
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BU of 2yvk by Molmil
Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis
分子名称: 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase
著者Tamura, H, Inoue, T, Kai, Y, Matsumura, H.
登録日2007-04-13
公開日2008-01-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism
Protein Sci., 17, 2008
1JQN
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Crystal structure of E.coli phosphoenolpyruvate carboxylase in complex with Mn2+ and DCDP
分子名称: 3,3-DICHLORO-2-PHOSPHONOMETHYL-ACRYLIC ACID, ASPARTIC ACID, MANGANESE (II) ION, ...
著者Matsumura, H, Kai, Y.
登録日2001-08-07
公開日2003-01-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1JQO
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Crystal structure of C4-form phosphoenolpyruvate carboxylase from maize
分子名称: SULFATE ION, phosphoenolpyruvate carboxylase
著者Matsumura, H, Kai, Y.
登録日2001-08-07
公開日2003-01-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1UAT
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The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
分子名称: Azurin iso-2, COPPER (II) ION, SULFATE ION
著者Inoue, T, Suzuki, S, Nisho, N, Yamaguchi, K, Kataoka, K, Tobari, J, Yong, X, Hamanaka, S, Matsumura, H, Kai, Y.
登録日2003-03-19
公開日2004-03-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
J.Mol.Biol., 333, 2003
1V40
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First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase
分子名称: 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4-TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H-TETRAAZOL-2-IUM, GLUTATHIONE, GLYCEROL, ...
著者Inoue, T, Okano, Y, Kado, Y, Aritake, K, Irikura, D, Uodome, N, Kinugasa, S, Okazaki, N, Matsumura, H, Kai, Y, Urade, Y.
登録日2003-11-07
公開日2004-11-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
1RKR
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BU of 1rkr by Molmil
CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
分子名称: AZURIN-I, COPPER (II) ION
著者Li, C, Inoue, T, Gotowda, M, Suzuki, S, Yamaguchi, K, Kataoka, K, Kai, Y.
登録日1997-05-17
公開日1998-05-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1C7K
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CRYSTAL STRUCTURE OF THE ZINC PROTEASE
分子名称: CALCIUM ION, ZINC ENDOPROTEASE, ZINC ION
著者Kurisu, G, Harada, S, Kai, Y.
登録日2000-02-19
公開日2001-04-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Structure of the zinc-binding site in the crystal structure of a zinc endoprotease from Streptomyces caespitosus at 1 A resolution.
J.Inorg.Biochem., 82, 2000
1BQR
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REDUCED PSEUDOAZURIN
分子名称: COPPER (II) ION, PSEUDOAZURIN
著者Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
登録日1998-08-17
公開日1999-08-17
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BQK
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OXIDIZED PSEUDOAZURIN
分子名称: COPPER (II) ION, PSEUDOAZURIN
著者Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
登録日1998-08-17
公開日1999-08-17
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1WS8
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
分子名称: COPPER (II) ION, GLYCEROL, mavicyanin
著者Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
登録日2004-11-02
公開日2004-11-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS7
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
分子名称: COPPER (I) ION, Mavicyanin
著者Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
登録日2004-11-02
公開日2004-11-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1BYO
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WILD-TYPE PLASTOCYANIN FROM SILENE
分子名称: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
著者Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
登録日1998-10-19
公開日1999-10-15
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999

 

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