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PDB: 118 results

4WA9
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The crystal structure of human abl1 wild type kinase domain in complex with axitinib
Descriptor: AXITINIB, Tyrosine-protein kinase ABL1
Authors:Johnson, E, McTigue, M, Cronin, C.N.
Deposit date:2014-08-28
Release date:2015-02-11
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Axitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation.
Nature, 519, 2015
1QQN
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BU of 1qqn by Molmil
D206S MUTANT OF BOVINE 70 KILODALTON HEAT SHOCK PROTEIN
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, D206S MUTANT OF BOVINE 70 KILODALTON HEAT SHOCK PROTEIN, ...
Authors:Johnson, E.R, McKay, D.B.
Deposit date:1999-06-07
Release date:1999-09-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mapping the role of active site residues for transducing an ATP-induced conformational change in the bovine 70-kDa heat shock cognate protein.
Biochemistry, 38, 1999
8FP1
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BU of 8fp1 by Molmil
PKCeta kinase domain in complex with compound 2
Descriptor: (3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile, Protein kinase C eta type
Authors:Johnson, E.
Deposit date:2023-01-03
Release date:2023-04-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1.
J.Med.Chem., 66, 2023
8FP3
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PKCeta kinase domain in complex with compound 11
Descriptor: (3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile, Protein kinase C eta type
Authors:Johnson, E.
Deposit date:2023-01-03
Release date:2023-04-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1.
J.Med.Chem., 66, 2023
9PE9
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BU of 9pe9 by Molmil
GSK3beta in complex with compound 6
Descriptor: (3R,4R)-4-({(4M)-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-1,3-benzimidazol-6-yl]pyrimidin-2-yl}amino)-1-(methanesulfonyl)piperidin-3-ol, Glycogen synthase kinase-3 beta
Authors:Johnson, E, Chen, P.
Deposit date:2025-07-01
Release date:2025-12-17
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Discovery of Atirmociclib (PF-07220060): A Potent and Selective CDK4 Inhibitor.
J.Med.Chem., 2025
9PE8
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CDK6 to CDK4 active site surrogate in complex with PF-07220060
Descriptor: Atirmociclib, Cyclin-dependent kinase 6
Authors:Johnson, E, Chen, P.
Deposit date:2025-07-01
Release date:2025-12-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of Atirmociclib (PF-07220060): A Potent and Selective CDK4 Inhibitor.
J.Med.Chem., 2025
9PE7
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BU of 9pe7 by Molmil
CDK6 to CDK4 active site surrogate in complex with compound 6
Descriptor: (3R,4R)-4-({(4M)-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-1,3-benzimidazol-6-yl]pyrimidin-2-yl}amino)-1-(methanesulfonyl)piperidin-3-ol, Cyclin-dependent kinase 6
Authors:Johnson, E, Chen, P.
Deposit date:2025-07-01
Release date:2025-12-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of Atirmociclib (PF-07220060): A Potent and Selective CDK4 Inhibitor.
J.Med.Chem., 2025
9D00
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BU of 9d00 by Molmil
HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 53
Descriptor: 4-[(1R)-1-aminopropyl]-6-methoxy-2-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}-2,3-dihydro-1H-isoindol-1-one, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Johnson, E, McTigue, M, Cronin, C.N.
Deposit date:2024-08-05
Release date:2024-12-18
Last modified:2025-01-08
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Discovery of PF-07265028, A Selective Small Molecule Inhibitor of Hematopoietic Progenitor Kinase 1 (HPK1) for the Treatment of Cancer.
J.Med.Chem., 67, 2024
9CZT
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BU of 9czt by Molmil
HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 6
Descriptor: 4-(aminomethyl)-2-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}-2,3-dihydro-1H-isoindol-1-one, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Johnson, E, Mc Tigue, M.
Deposit date:2024-08-05
Release date:2024-12-18
Last modified:2025-01-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Discovery of PF-07265028, A Selective Small Molecule Inhibitor of Hematopoietic Progenitor Kinase 1 (HPK1) for the Treatment of Cancer.
J.Med.Chem., 67, 2024
9CZW
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BU of 9czw by Molmil
HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 13
Descriptor: 6-(dimethylamino)-4-[(methylamino)methyl]-2-[6-(4-propyl-4H-1,2,4-triazol-3-yl)pyridin-2-yl]-2,3-dihydro-1H-pyrrolo[3,4-c]pyridin-1-one, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Johnson, E, Mc Tigue, M.
Deposit date:2024-08-05
Release date:2024-12-18
Last modified:2025-01-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Discovery of PF-07265028, A Selective Small Molecule Inhibitor of Hematopoietic Progenitor Kinase 1 (HPK1) for the Treatment of Cancer.
J.Med.Chem., 67, 2024
9CZX
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BU of 9czx by Molmil
HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 21
Descriptor: 4-[(1R)-1-aminopropyl]-2-{6-[(4S,5S)-5-methyl-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]pyridin-2-yl}-6-[(2R)-2-methylpyrrolidin-1-yl]-2,3-dihydro-1H-pyrrolo[3,4-c]pyridin-1-one, CHLORIDE ION, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Johnson, E, Mc Tigue, M.
Deposit date:2024-08-05
Release date:2024-12-18
Last modified:2025-01-08
Method:X-RAY DIFFRACTION (1.464 Å)
Cite:Discovery of PF-07265028, A Selective Small Molecule Inhibitor of Hematopoietic Progenitor Kinase 1 (HPK1) for the Treatment of Cancer.
J.Med.Chem., 67, 2024
9CZU
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BU of 9czu by Molmil
HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 9
Descriptor: 6-methoxy-4-[(methylamino)methyl]-2-(6-{4-[(2S)-4,4,4-trifluorobutan-2-yl]-4H-1,2,4-triazol-3-yl}pyridin-2-yl)-2,3-dihydro-1H-isoindol-1-one, Mitogen-activated protein kinase kinase kinase kinase 1, SULFATE ION
Authors:Johnson, E, Mc Tigue, M.
Deposit date:2024-08-05
Release date:2024-12-18
Last modified:2025-01-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Discovery of PF-07265028, A Selective Small Molecule Inhibitor of Hematopoietic Progenitor Kinase 1 (HPK1) for the Treatment of Cancer.
J.Med.Chem., 67, 2024
6NFY
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BU of 6nfy by Molmil
Crystal structure of nonphosphorylated, HPK1 kinase domain in complex with sunitinib in the inactive state.
Descriptor: Mitogen-activated protein kinase kinase kinase kinase 1, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide
Authors:Johnson, E, McTigue, M, Cronin, C.N.
Deposit date:2018-12-21
Release date:2019-05-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation.
J.Biol.Chem., 294, 2019
6NG0
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BU of 6ng0 by Molmil
Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with sunitinib in the inactive state.
Descriptor: Mitogen-activated protein kinase kinase kinase kinase 1, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide
Authors:Johnson, E, McTigue, M, Cronin, C.N.
Deposit date:2018-12-21
Release date:2019-05-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation.
J.Biol.Chem., 294, 2019
6NFZ
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BU of 6nfz by Molmil
Crystal structure of diphosphorylated HPK1 kinase domain in complex with sunitinib in the active state.
Descriptor: Mitogen-activated protein kinase kinase kinase kinase 1, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide
Authors:Johnson, E, McTigue, M, Cronin, C.N.
Deposit date:2018-12-21
Release date:2019-05-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.966 Å)
Cite:Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation.
J.Biol.Chem., 294, 2019
9D8U
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BU of 9d8u by Molmil
Crystal structure of CDK6 in complex with atirmociclib
Descriptor: Atirmociclib, Cyclin-dependent kinase 6
Authors:Johnson, E, Chen, P, Ferre, R.A, Deihl, W, Yu, X, He, Y.-A.
Deposit date:2024-08-20
Release date:2025-03-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:CDK4 selective inhibition improves preclinical anti-tumor efficacy and safety.
Cancer Cell, 43, 2025
9DZN
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BU of 9dzn by Molmil
KAT6A MYST domain complexed with a H3K14-CoA bisubstrate inhibitor
Descriptor: CARBOXYMETHYL COENZYME *A, GLYCEROL, Histone H3K14, ...
Authors:Johnson, E, Greasley, S, Brodsky, O.
Deposit date:2024-10-16
Release date:2025-02-19
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.724 Å)
Cite:Modulation of the substrate preference of a MYST acetyltransferase by a scaffold protein.
J.Biol.Chem., 301, 2025
5W0C
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BU of 5w0c by Molmil
Cytochrome P450 (CYP) 2C9 TCA007 Inhibitor Complex
Descriptor: Cytochrome P450 2C9, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Johnson, E.F, Hsu, M.-H.
Deposit date:2017-05-30
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Determinants of the Inhibition of DprE1 and CYP2C9 by Antitubercular Thiophenes.
Angew. Chem. Int. Ed. Engl., 56, 2017
9CSK
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BU of 9csk by Molmil
Crystal structure of CDK4 cyclin D1 in complex with atirmociclib
Descriptor: Atirmociclib, Cyclin-dependent kinase 4, G1/S-specific cyclin-D1
Authors:Johnson, E.
Deposit date:2024-07-24
Release date:2025-03-26
Method:X-RAY DIFFRACTION (2.253 Å)
Cite:CDK4 selective inhibition improves preclinical anti-tumor efficacy and safety.
Cancer Cell, 43, 2025
4XRY
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BU of 4xry by Molmil
Human Cytochrome P450 2D6 BACE1 Inhibitor 5 Complex
Descriptor: (4aR,6R,8aS)-8a-(2,4-difluorophenyl)-6-(1-methyl-1H-pyrazol-4-yl)-4,4a,5,6,8,8a-hexahydropyrano[3,4-d][1,3]thiazin-2-amine, Cytochrome P450 2D6, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Johnson, E.F, Fan, Y.
Deposit date:2015-01-21
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Utilizing Structures of CYP2D6 and BACE1 Complexes To Reduce Risk of Drug-Drug Interactions with a Novel Series of Centrally Efficacious BACE1 Inhibitors.
J.Med.Chem., 58, 2015
4XRZ
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BU of 4xrz by Molmil
Human Cytochrome P450 2D6 BACE1 Inhibitor 6 Complex
Descriptor: (4aR,6R,8aS)-8a-(2,4-difluorophenyl)-6-(1H-pyrazol-4-yl)-4,4a,5,6,8,8a-hexahydropyrano[3,4-d][1,3]thiazin-2-amine, Cytochrome P450 2D6, GLYCEROL, ...
Authors:Johnson, E.F, Fan, Y.
Deposit date:2015-01-21
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Utilizing Structures of CYP2D6 and BACE1 Complexes To Reduce Risk of Drug-Drug Interactions with a Novel Series of Centrally Efficacious BACE1 Inhibitors.
J.Med.Chem., 58, 2015
9DAI
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BU of 9dai by Molmil
Crystal structure of Trk-A in complex with Staurosporin
Descriptor: High affinity nerve growth factor receptor, STAUROSPORINE
Authors:Johnson, E, Greasley, S.E, Kraus, M.L, Cronin, C.N.
Deposit date:2024-08-22
Release date:2025-09-03
Method:X-RAY DIFFRACTION (2.864 Å)
Cite:Crystal structure of Trk-A in complex with Staurosporin
To Be Published
3DHX
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BU of 3dhx by Molmil
Crystal structure of isolated C2 domain of the methionine uptake transporter
Descriptor: IODIDE ION, Methionine import ATP-binding protein metN
Authors:Johnson, E, Kaiser, J.T, Lee, A.T, Rees, D.C.
Deposit date:2008-06-18
Release date:2008-08-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The high-affinity E. coli methionine ABC transporter: structure and allosteric regulation.
Science, 321, 2008
3KX9
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BU of 3kx9 by Molmil
Engineering a closed form of the Archaeoglobus fulgidus ferritin by site directed mutagenesis
Descriptor: Ferritin, GLYCEROL
Authors:Johnson, E, Cascio, D, Sawaya, M.R.
Deposit date:2009-12-02
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:The role of nonconserved residues of Archaeoglobus fulgidus ferritin on its unique structure and biophysical properties.
J.Biol.Chem., 288, 2013
3TUI
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BU of 3tui by Molmil
Inward facing conformations of the MetNI methionine ABC transporter: CY5 native crystal form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-methionine transport system permease protein metI, Methionine import ATP-binding protein MetN
Authors:Johnson, E, Nguyen, P.T, Rees, D.C.
Deposit date:2011-09-16
Release date:2011-11-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition.
Protein Sci., 21, 2012

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