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PDB: 173 results

6ZVY
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BU of 6zvy by Molmil
X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-Q165H-P174R LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
Descriptor: CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Tarnawski, M, Frei, M, Hiblot, J, Johnsson, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Engineered HaloTag variants for fluorescence lifetime multiplexing.
Nat.Methods, 19, 2022
6ZVV
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BU of 6zvv by Molmil
X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-P174W LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Tarnawski, M, Frei, M, Hiblot, J, Johnsson, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-P174W LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
To Be Published
6Y7B
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BU of 6y7b by Molmil
X-ray structure of the Haloalkane dehalogenase HaloTag7 labeled with a chloroalkane-carbopyronine fluorophore substrate
Descriptor: 4-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]-2-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)-10,10-dimethyl-anthracen-9-yl]benzoic acid, CHLORIDE ION, Haloalkane dehalogenase
Authors:Tarnawski, M, Johnsson, K, Hiblot, J.
Deposit date:2020-02-28
Release date:2021-03-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag.
Biochemistry, 60, 2021
4TRT
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BU of 4trt by Molmil
Deinococcus radiodurans DNA polymerase III subunit beta
Descriptor: DNA polymerase III subunit beta
Authors:Niiranen, L, Lian, K, Johnson, K.A, Moe, E.
Deposit date:2014-06-17
Release date:2015-04-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the DNA polymerase III beta subunit ( beta-clamp) from the extremophile Deinococcus radiodurans.
Bmc Struct.Biol., 15, 2015
5TVV
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BU of 5tvv by Molmil
Computationally Designed Fentanyl Binder - Fen49* Apo
Descriptor: Endo-1,4-beta-xylanase A, POTASSIUM ION
Authors:Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, A.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
8VHH
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BU of 8vhh by Molmil
Engineered holo tryptophan synthase (Tm9D8*) derived from T. maritima TrpB
Descriptor: PHOSPHATE ION, POTASSIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Porter, N.J, Johnston, K.E, Almhjell, P.J, Arnold, F.H.
Deposit date:2024-01-02
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A combinatorially complete epistatic fitness landscape in an enzyme active site.
Proc.Natl.Acad.Sci.USA, 121, 2024
5TVY
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BU of 5tvy by Molmil
Computationally Designed Fentanyl Binder - Fen49
Descriptor: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, Endo-1,4-beta-xylanase A
Authors:Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
Deposit date:2016-11-10
Release date:2017-10-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
8OVN
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BU of 8ovn by Molmil
X-ray structure of the SF-iGluSnFR-S72A
Descriptor: CITRIC ACID, Putative periplasmic binding transport protein,Green fluorescent protein
Authors:Tarnawski, M, Hellweg, L, Bergner, A, Hiblot, J, Leippe, P, Johnsson, K.
Deposit date:2023-04-26
Release date:2023-05-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-ray structure of the SF-iGluSnFR-S72A
To Be Published
8OVO
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BU of 8ovo by Molmil
X-ray structure of the SF-iGluSnFR-S72A in complex with L-aspartate
Descriptor: ASPARTIC ACID, Putative periplasmic binding transport protein,Green fluorescent protein
Authors:Tarnawski, M, Hellweg, L, Bergner, A, Hiblot, J, Leippe, P, Johnsson, K.
Deposit date:2023-04-26
Release date:2023-05-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray structure of the SF-iGluSnFR-S72A in complex with L-aspartate
To Be Published
6Y7A
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BU of 6y7a by Molmil
X-ray structure of the Haloalkane dehalogenase HaloTag7 labeled with a chloroalkane-tetramethylrhodamine fluorophore substrate
Descriptor: CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Tarnawski, M, Johnsson, K, Hiblot, J.
Deposit date:2020-02-28
Release date:2021-03-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag.
Biochemistry, 60, 2021
6Y8P
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BU of 6y8p by Molmil
Crystal structure of SNAP-tag labeled with a benzyl-tetramethylrhodamine fluorophore
Descriptor: 1,2-ETHANEDIOL, O6-alkylguanine-DNA alkyltransferase mutant, ZINC ION, ...
Authors:Gotthard, G, Tanzer, T, Johnsson, K, Hiblot, J.
Deposit date:2020-03-05
Release date:2021-03-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag.
Biochemistry, 60, 2021
5WBF
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BU of 5wbf by Molmil
Double CACHE (dCACHE) sensing domain of TlpC chemoreceptor from Helicobacter pylori
Descriptor: GLYCEROL, LACTIC ACID, Methyl-accepting chemotaxis transducer (TlpC)
Authors:Machuca, M.A, Johnson, K.S, Liu, Y.C, Steer, D.L, Ottemann, K.M, Roujeinikova, A.
Deposit date:2017-06-28
Release date:2017-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Helicobacter pylori chemoreceptor TlpC mediates chemotaxis to lactate.
Sci Rep, 7, 2017
7ZJ0
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BU of 7zj0 by Molmil
X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a pentylmethanesulfonamide tetramethylrhodamine ligand (TMR-S5)
Descriptor: GLYCEROL, Haloalkane dehalogenase, [9-[2-carboxy-5-[2-[2-[5-(methylsulfonylamino)pentoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium
Authors:Tarnawski, M, Kompa, J, Johnsson, K, Hiblot, J.
Deposit date:2022-04-08
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Exchangeable HaloTag Ligands for Super-Resolution Fluorescence Microscopy.
J.Am.Chem.Soc., 145, 2023
4HWK
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BU of 4hwk by Molmil
Crystal structure of human sepiapterin reductase in complex with sulfapyridine
Descriptor: 4-amino-N-(pyridin-2-yl)benzenesulfonamide, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Groenlund Pedersen, M, Pojer, F, Johnsson, K.
Deposit date:2012-11-08
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Tetrahydrobiopterin biosynthesis as an off-target of sulfa drugs.
Science, 340, 2013
3FFE
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BU of 3ffe by Molmil
Structure of Achromobactin Synthetase Protein D, (AcsD)
Descriptor: AcsD
Authors:McMahon, S.A, Liu, H, Carter, L, Oke, M, Johnson, K.A, Schmelz, S, Challis, G.L, White, M.F, Naismith, J.H, Scottish Structural Proteomics Facility (SSPF)
Deposit date:2008-12-03
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis
Nat.Chem.Biol., 5, 2009
6ZVU
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BU of 6zvu by Molmil
X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-P174L LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
Descriptor: CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Tarnawski, M, Frei, M, Hiblot, J, Johnsson, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-P174L LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
To Be Published
6ZVX
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BU of 6zvx by Molmil
X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-Q165H-P174L LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
Descriptor: CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Tarnawski, M, Frei, M, Hiblot, J, Johnsson, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-Q165H-P174L LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
To Be Published
6ZVW
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BU of 6zvw by Molmil
X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-Q165H LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Tarnawski, M, Frei, M, Hiblot, J, Johnsson, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-RAY STRUCTURE OF THE HALOALKANE DEHALOGENASE HALOTAG7-Q165H LABELED WITH A CHLOROALKANE-TETRAMETHYLRHODAMINE FLUOROPHORE SUBSTRATE
To Be Published
3C6W
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BU of 3c6w by Molmil
Crystal structure of the ING5 PHD finger in complex with H3K4me3 peptide
Descriptor: H3K4me3 histone peptide, Inhibitor of growth protein 5, ZINC ION
Authors:Champagne, K.S, Pena, P.V, Johnson, K, Kutateladze, T.G.
Deposit date:2008-02-05
Release date:2008-06-03
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide.
Proteins, 72, 2008
4J7U
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BU of 4j7u by Molmil
Crystal structure of human sepiapterin reductase in complex with sulfathiazole
Descriptor: 4-amino-N-(1,3-thiazol-2-yl)benzenesulfonamide, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Groenlund Pedersen, M, Pojer, F, Johnsson, K.
Deposit date:2013-02-14
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Tetrahydrobiopterin biosynthesis as an off-target of sulfa drugs.
Science, 340, 2013
1GJY
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BU of 1gjy by Molmil
The X-ray structure of the Sorcin Calcium Binding Domain (SCBD) provides insight into the phosphorylation and calcium dependent processess
Descriptor: SORCIN, SULFATE ION
Authors:Ilari, A, Johnson, K.A, Nastopoulos, V, Tsernoglou, D, Chiancone, E.
Deposit date:2001-08-06
Release date:2002-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Crystal Structure of the Sorcin Calcium Binding Domain Provides a Model of Ca(2+)-Dependent Processes in the Full-Length Protein
J.Mol.Biol., 317, 2002
2W6W
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BU of 2w6w by Molmil
Crystal structure of recombinant Sperm Whale Myoglobin under 1atm of Xenon
Descriptor: GLYCEROL, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Miele, A.E, Draghi, F, Renzi, F, Sciara, G, Johnson, K.A, Vallone, B, Brunori, M, Savino, C.
Deposit date:2008-12-19
Release date:2009-04-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Pattern of Cavities in Globins: The Case of Human Hemoglobin.
Biopolymers, 91, 2009
2W72
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BU of 2w72 by Molmil
DEOXYGENATED STRUCTURE OF A DISTAL SITE HEMOGLOBIN MUTANT PLUS XE
Descriptor: HUMAN HEMOGLOBIN A, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Miele, A.E, Draghi, F, Sciara, G, Johnson, K.A, Renzi, F, Vallone, B, Brunori, M, Savino, C.
Deposit date:2008-12-19
Release date:2009-04-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Pattern of Cavities in Globins: The Case of Human Hemoglobin.
Biopolymers, 91, 2009
1DK4
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BU of 1dk4 by Molmil
CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE
Descriptor: INOSITOL MONOPHOSPHATASE, PHOSPHATE ION, ZINC ION
Authors:Stec, B, Yang, H, Johnson, K.A, Chen, L, Roberts, M.F.
Deposit date:1999-12-06
Release date:2000-11-08
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:MJ0109 is an enzyme that is both an inositol monophosphatase and the 'missing' archaeal fructose-1,6-bisphosphatase.
Nat.Struct.Biol., 7, 2000
1DUX
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BU of 1dux by Molmil
ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION
Descriptor: DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3'), ETS-DOMAIN PROTEIN ELK-1
Authors:Mo, Y, Vaessen, B, Johnston, K, Marmorstein, R.
Deposit date:2000-01-19
Release date:2000-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA.
Nat.Struct.Biol., 7, 2000

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