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PDB: 270 件
3KUH
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BU of 3kuh by Molmil
Crystal structure of E. coli HPPK(H115A) in complex with AMPCPP and HP
分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-11-27
公開日2010-11-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Roles of residues E77 and H115 in E. coli HPPK
To be Published
4EYA
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BU of 4eya by Molmil
Crystal Structure of a Plectonemic RNA Supercoil
分子名称: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ...
著者Stagno, J.R, Ji, X.
登録日2012-05-01
公開日2012-06-20
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of a plectonemic RNA supercoil.
Nat Commun, 3, 2012
5JMT
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BU of 5jmt by Molmil
Crystal structure of Zika virus NS3 helicase
分子名称: NS3 helicase
著者Tian, H, Ji, X, Yang, X, Xie, W, Yang, K, Chen, C, Wu, C, Chi, H, Mu, Z, Wang, Z, Yang, H.
登録日2016-04-29
公開日2016-05-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献The crystal structure of Zika virus helicase: basis for antiviral drug design
Protein Cell, 7, 2016
8GZZ
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BU of 8gzz by Molmil
Local refinement of SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab
分子名称: Spike protein S1, rabbit monoclonal antibody 1H1 Fab heavy chain, rabbit monoclonal antibody 1H1 Fab light chain
著者Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
登録日2022-09-27
公開日2023-04-12
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.52 Å)
主引用文献Mechanism of a rabbit monoclonal antibody broadly neutralizing SARS-CoV-2 variants.
Commun Biol, 6, 2023
4M2Z
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BU of 4m2z by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA and CMP (TYPE II CLEAVAGE)
分子名称: CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA10, ...
著者Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2013-08-05
公開日2013-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
4S1K
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BU of 4s1k by Molmil
Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polyhedrin
著者Ginn, H.M, Messerschmidt, M, Ji, X, Zhang, H, Axford, D, Gildea, R.J, Winter, G, Brewster, A.S, Hattne, J, Wagner, A, Grimes, J.M, Evans, G, Sauter, N.K, Sutton, G, Stuart, D.I.
登録日2015-01-14
公開日2015-03-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data.
Nat Commun, 6, 2015
4M30
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BU of 4m30 by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA AND AMP (TYPE II CLEAVAGE)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
著者Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2013-08-05
公開日2013-12-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
4S1L
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Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 298 K
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, polyhedrin
著者Ginn, H.M, Messerschmidt, M, Ji, X, Zhang, H, Axford, D, Gildea, R.J, Winter, G, Brewster, A.S, Hattne, J, Wagner, A, Grimes, J.M, Evans, G, Sauter, N.K, Sutton, G, Stuart, D.I.
登録日2015-01-14
公開日2015-03-25
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.752 Å)
主引用文献Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data.
Nat Commun, 6, 2015
8GZ4
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BU of 8gz4 by Molmil
Crystal structure of MPXV phosphatase
分子名称: Dual specificity protein phosphatase H1, PHOSPHATE ION
著者Yang, H.T, Wang, W, Huang, H.J, Ji, X.Y.
登録日2022-09-25
公開日2023-05-17
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Crystal structure of monkeypox H1 phosphatase, an antiviral drug target.
Protein Cell, 14, 2023
4OTV
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BU of 4otv by Molmil
Crystal structure of in cellulo Operophtera brumata CPV18
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Stuart, D.I, Sutton, G.C, Axford, D, Ji, X.
登録日2014-02-14
公開日2014-05-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献In cellulo structure determination of a novel cypovirus polyhedrin.
Acta Crystallogr.,Sect.D, 70, 2014
7EQD
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BU of 7eqd by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E},18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22,26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione, CARDIOLIPIN, ...
著者Tani, K, Kanno, R, Ji, X.-C, Yu, L.-J, Hall, M, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
登録日2021-05-01
公開日2021-08-18
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Cryo-EM Structure of the Photosynthetic LH1-RC Complex from Rhodospirillum rubrum .
Biochemistry, 2021
4OTS
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BU of 4ots by Molmil
Crystal Structure of isolated Operophtera brumata CPV18
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Stuart, D.I, Sutton, G.C, Axford, D, Ji, X.
登録日2014-02-14
公開日2014-05-14
最終更新日2014-09-24
実験手法X-RAY DIFFRACTION (1.704 Å)
主引用文献In cellulo structure determination of a novel cypovirus polyhedrin.
Acta Crystallogr.,Sect.D, 70, 2014
6ATP
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BU of 6atp by Molmil
Crystal structure of apo-hGSTA1-1 exhibiting a new conformation of C-terminal helix
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Glutathione S-transferase A1
著者Kumari, V, Ji, X.
登録日2017-08-29
公開日2018-09-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The dynamic nature of hGSTA1-1 C-terminal helix
To be published
6ATQ
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BU of 6atq by Molmil
Crystal structure of apo-hGSTA1-1 exhibiting a new conformation of C-terminal helix
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Glutathione S-transferase A1
著者Kumari, V, Ji, X.
登録日2017-08-29
公開日2018-09-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The dynamic nature of hGSTA1-1 C-terminal helix
To be published
6ATO
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BU of 6ato by Molmil
Crystal structure of hGSTA1-1 complexed with GSH and MPD in each subunit
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, GLUTATHIONE, Glutathione S-transferase A1
著者Kumari, V, Ji, X.
登録日2017-08-29
公開日2018-09-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The dynamic nature of hGSTA1-1 C-terminal helix
To be published
6ATR
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BU of 6atr by Molmil
Crystal structure of hGSTA1-1 complexed with two GSH analogues in each subunit
分子名称: 1,2-ETHANEDIOL, 2-AMINO-5-[1-(CARBOXYLATOMETHYLCARBAMOYL)-2-NITROSOSULFANYL-ETHYL]AMINO-5-OXO-PENTANOATE, Glutathione S-transferase A1, ...
著者Kumari, V, Ji, X.
登録日2017-08-29
公開日2018-09-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献hGSTA1 apo structure and dynamic c-terminus helix
To be published
8GKV
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BU of 8gkv by Molmil
Crystal structure of anti-adaptor IraP that regulates RpoS proteolysis
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Shaw, G.X, Gan, J, Suburaman, P, Battesti, A, Zhou, Y.N, Wickner, S, Gottesman, S, Ji, X.
登録日2023-03-20
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Structural and functional study of anti-adaptor IraP-mediated regulation of RpoS proteolysis
to be published
4ZWE
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BU of 4zwe by Molmil
Crystal structure of the dGTP-bound catalytic core of SAMHD1 T592V mutant
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, MAGNESIUM ION
著者Tang, C, Ji, X, Xiong, Y.
登録日2015-05-19
公開日2015-09-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Impaired dNTPase Activity of SAMHD1 by Phosphomimetic Mutation of Thr-592.
J.Biol.Chem., 290, 2015
4OOG
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BU of 4oog by Molmil
Crystal structure of yeast RNase III (Rnt1p) complexed with the product of dsRNA processing
分子名称: 34-mer RNA, MAGNESIUM ION, Ribonuclease 3
著者Liang, Y.-H, Ji, X.
登録日2014-02-02
公開日2014-04-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection.
Mol.Cell, 54, 2014
5D1L
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BU of 5d1l by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A)
分子名称: DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, OXALATE ION, ...
著者Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
登録日2015-08-04
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.618 Å)
主引用文献Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
5D1K
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BU of 5d1k by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ...
著者Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
登録日2015-08-04
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
1YY7
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BU of 1yy7 by Molmil
Crystal structure of stringent starvation protein A (SspA), an RNA polymerase-associated transcription factor
分子名称: CITRIC ACID, stringent starvation protein A
著者Hansen, A.-M, Gu, Y, Li, M, Andrykovitch, M, Waugh, D.S, Jin, D.J, Ji, X.
登録日2005-02-23
公開日2005-03-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural basis for the function of stringent starvation protein A as a transcription factor
J.Biol.Chem., 280, 2005
1YYK
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BU of 1yyk by Molmil
Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III
著者Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
登録日2005-02-25
公開日2005-11-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YYO
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BU of 1yyo by Molmil
Crystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom Resolution
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III
著者Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
登録日2005-02-25
公開日2005-11-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YZ9
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BU of 1yz9 by Molmil
Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution
分子名称: 5'-R(*CP*GP*AP*AP*CP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III, SULFATE ION
著者Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
登録日2005-02-28
公開日2005-11-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005

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