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PDB: 272 件
4OTV
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BU of 4otv by Molmil
Crystal structure of in cellulo Operophtera brumata CPV18
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Stuart, D.I, Sutton, G.C, Axford, D, Ji, X.
登録日2014-02-14
公開日2014-05-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献In cellulo structure determination of a novel cypovirus polyhedrin.
Acta Crystallogr.,Sect.D, 70, 2014
2NUF
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BU of 2nuf by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution
分子名称: 28-MER, MAGNESIUM ION, Ribonuclease III
著者Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
登録日2006-11-09
公開日2007-11-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
8SV5
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BU of 8sv5 by Molmil
Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin
分子名称: 1,2-ETHANEDIOL, 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 7,8-dihydroneopterin aldolase
著者Shaw, G.X, Li, Y, Yan, H, Ji, X.
登録日2023-05-15
公開日2023-06-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin
To be published
3HSZ
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BU of 3hsz by Molmil
Crystal structure of E. coli HPPK(F123A)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CHLORIDE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-11
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
2NUE
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BU of 2nue by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.9-Angstrom Resolution
分子名称: 46-MER, Ribonuclease III
著者Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
登録日2006-11-09
公開日2007-11-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
3HSJ
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BU of 3hsj by Molmil
Crystal structure of E. coli HPPK(N55A)
分子名称: ACETATE ION, GLYCEROL, HPPK
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-10
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
4M2Z
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BU of 4m2z by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA and CMP (TYPE II CLEAVAGE)
分子名称: CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA10, ...
著者Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2013-08-05
公開日2013-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
4ZWE
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BU of 4zwe by Molmil
Crystal structure of the dGTP-bound catalytic core of SAMHD1 T592V mutant
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, MAGNESIUM ION
著者Tang, C, Ji, X, Xiong, Y.
登録日2015-05-19
公開日2015-09-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Impaired dNTPase Activity of SAMHD1 by Phosphomimetic Mutation of Thr-592.
J.Biol.Chem., 290, 2015
3HSD
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BU of 3hsd by Molmil
Crystal structure of E. coli HPPK(Y53A)
分子名称: CHLORIDE ION, GLYCEROL, HPPK, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-10
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.652 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK.
To be Published
2NM2
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BU of 2nm2 by Molmil
Crystal structure of dihydroneopterin aldolase from S. aureus in complex with (1S,2R)-neopterin at 1.50 Angstrom resolution
分子名称: Dihydroneopterin aldolase, L-NEOPTERIN
著者Blaszczyk, J, Ji, X, Yan, H.
登録日2006-10-20
公開日2007-09-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for the aldolase and epimerase activities of Staphylococcus aureus dihydroneopterin aldolase.
J.Mol.Biol., 368, 2007
3HCX
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BU of 3hcx by Molmil
Crystal structure of E. coli HPPK(N10A)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, CHLORIDE ION
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-05-06
公開日2010-05-19
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Role of loop coupling in enzymatic catalysis and conformational dynamics
To be Published
3HT0
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BU of 3ht0 by Molmil
Crystal structure of E. coli HPPK(F123A) in complex with MgAMPCPP
分子名称: CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, HPPK, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-11
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
4M30
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BU of 4m30 by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA AND AMP (TYPE II CLEAVAGE)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
著者Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2013-08-05
公開日2013-12-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
6PBZ
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BU of 6pbz by Molmil
Crystal structure of Escherichia coli GppA
分子名称: CHLORIDE ION, Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
著者Song, H, Shaw, G.X, Wang, C, Ji, X.
登録日2019-06-15
公開日2019-11-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.475 Å)
主引用文献Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
4OOG
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BU of 4oog by Molmil
Crystal structure of yeast RNase III (Rnt1p) complexed with the product of dsRNA processing
分子名称: 34-mer RNA, MAGNESIUM ION, Ribonuclease 3
著者Liang, Y.-H, Ji, X.
登録日2014-02-02
公開日2014-04-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection.
Mol.Cell, 54, 2014
6PC3
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BU of 6pc3 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA in complex with GSP
分子名称: 1,2-ETHANEDIOL, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, CHLORIDE ION, ...
著者Song, H, Wang, C, Shaw, G.X, Ji, X.
登録日2019-06-15
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
6PC2
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BU of 6pc2 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA in complex with GNP
分子名称: Guanosine pentaphosphate phosphohydrolase, MAGNESIUM ION, PHOSPHATE ION, ...
著者Song, H, Wang, C, Shaw, G.X, Ji, X.
登録日2019-06-15
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
8T0S
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BU of 8t0s by Molmil
Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase AMFR, Ubiquitin-conjugating enzyme E2 G2
著者Wang, C, Shaw, G.X, Shi, G, Ji, X.
登録日2023-06-01
公開日2024-06-05
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position
To be published
3IP0
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BU of 3ip0 by Molmil
Crystal structure of E. coli HPPK in complex with MgAMPCPP and 6-hydroxymethylpterin/6-carboxypterin
分子名称: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 6-CARBOXYPTERIN, 6-HYDROXYMETHYLPTERIN, ...
著者Blaszczyk, J, Ji, X.
登録日2009-08-15
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydroptein pyrophosphokinase: Crystallographic studies
Biochemistry, 42, 2003
8SSX
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BU of 8ssx by Molmil
Crystal structure of Bacillus anthracis dihydrofolate reductase at 1.65-A resolution
分子名称: 1,2-ETHANEDIOL, Dihydrofolate reductase, SULFATE ION
著者Shaw, G.X, Li, Y, Wu, Y, Yan, H, Ji, X.
登録日2023-05-09
公開日2023-05-17
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of Bacillus anthracis dihydrofolate reductase at 1.65-A resolution
To be published
8SZD
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BU of 8szd by Molmil
Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution
分子名称: CHLORIDE ION, Dihydrofolate reductase, MAGNESIUM ION, ...
著者Shaw, G.X, Cherry, S, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2023-05-29
公開日2023-06-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution
To be published
8SZE
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BU of 8sze by Molmil
Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Dihydrofolate reductase, ...
著者Shaw, G.X, Cherry, S, Tropea, J.E, Waugh, D.S, Ji, X.
登録日2023-05-29
公開日2023-06-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim
To be published
6O5F
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BU of 6o5f by Molmil
Crystal structure of DEAD-box RNA helicase DDX3X at pre-unwound state
分子名称: ATP-dependent RNA helicase DDX3X, CHLORIDE ION, RNA (5'-R(P*CP*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*GP*CP*AP*AP*GP*AP*GP*UP*GP*GP*CP*C)-3')
著者Song, H, Ji, X.
登録日2019-03-02
公開日2019-07-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.504 Å)
主引用文献The mechanism of RNA duplex recognition and unwinding by DEAD-box helicase DDX3X.
Nat Commun, 10, 2019
1L4U
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BU of 1l4u by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
著者Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
登録日2002-03-05
公開日2002-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002
1L4Y
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BU of 1l4y by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
登録日2002-03-06
公開日2002-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002

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