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PDB: 54 件
3Q50
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BU of 3q50 by Molmil
Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, PREQ1 RIBOSWITCH, SULFATE ION
著者Jenkins, J.L, Krucinska, J, Wedekind, J.E.
登録日2010-12-26
公開日2011-05-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.
J.Biol.Chem., 286, 2011
7LHX
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BU of 7lhx by Molmil
Human U1A protein with F37M and F77M mutations for improved phasing
分子名称: ACETATE ION, BETA-MERCAPTOETHANOL, SODIUM ION, ...
著者Jenkins, J.L, Lippa, G.M, Wedekind, J.E.
登録日2021-01-26
公開日2021-03-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Affinity and Structural Analysis of the U1A RNA Recognition Motif with Engineered Methionines to Improve Experimental Phasing
Crystals, 11, 2021
4TU9
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BU of 4tu9 by Molmil
STRUCTURE OF U2AF65 VARIANT WITH BRU5G6 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DG*U)-3'), GLYCEROL, ...
著者Jenkins, J.L, McLaughlin, K.J, Agrawal, A.A, Kielkopf, C.L.
登録日2014-06-24
公開日2014-11-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.992 Å)
主引用文献Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.
Proc.Natl.Acad.Sci.USA, 111, 2014
6VUH
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BU of 6vuh by Molmil
APO PreQ1 riboswitch aptamer grown in Mn2+
分子名称: MANGANESE (II) ION, PREQ1 RIBOSWITCH
著者Jenkins, J.L, Wedekind, J.E.
登録日2020-02-15
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Nucleic Acids Res., 48, 2020
6VUI
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BU of 6vui by Molmil
Metabolite-bound PreQ1 riboswitch with Mn2+
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MANGANESE (II) ION, PREQ1 RIBOSWITCH
著者Jenkins, J.L, Wedekind, J.E.
登録日2020-02-15
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.681 Å)
主引用文献Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Nucleic Acids Res., 48, 2020
3VAG
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BU of 3vag by Molmil
Structure of U2AF65 variant with BrU3C2 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*U*CP*(BRU)P*UP*UP*UP*U)-3', GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAH
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BU of 3vah by Molmil
Structure of U2AF65 variant with BrU3C4 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3', GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAL
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BU of 3val by Molmil
Structure of U2AF65 variant with BrU5C1 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3'), SULFATE ION, ...
著者Jenkins, J.L, Frato, K.H, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAK
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BU of 3vak by Molmil
Structure of U2AF65 variant with BrU5 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2017-08-16
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAF
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BU of 3vaf by Molmil
Structure of U2AF65 variant with BrU3 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3', GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAM
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BU of 3vam by Molmil
Structure of U2AF65 variant with BrU5C2 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAJ
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BU of 3vaj by Molmil
Structure of U2AF65 variant with BrU5C6 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3'), GLYCEROL, ...
著者Jenkins, J.L, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
3VAI
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BU of 3vai by Molmil
Structure of U2AF65 variant with BrU3C5 DNA
分子名称: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*UP*CP*UP*U)-3', GLYCEROL, ...
著者Jenkins, J.L, Frato, K.H, Kielkopf, C.L.
登録日2011-12-29
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.
Nucleic Acids Res., 41, 2013
2G82
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BU of 2g82 by Molmil
High Resolution Structures of Thermus aquaticus Glyceraldehyde-3-Phosphate Dehydrogenase: Role of 220's Loop Motion in Catalysis
分子名称: GLYCEROL, Glyceraldehyde-3-phosphate dehydrogenase, ISOPROPYL ALCOHOL, ...
著者Jenkins, J.L, Buencamino, R, Tanner, J.J.
登録日2006-03-01
公開日2007-03-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献High Resolution Structures of Thermus aquaticus Glyceraldehyde-3-Phosphate Dehydrogenase: Role of 220's Loop Motion in Catalysis
To be Published
2GPE
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BU of 2gpe by Molmil
Structure of the DNA-binding domain of E. Coli Proline Utilization A (PUTA)
分子名称: Bifunctional protein putA, IMIDAZOLE
著者Jenkins, J.L, Larson, J, Tanner, J.J.
登録日2006-04-17
公開日2007-02-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition.
Protein Sci., 15, 2006
6NSX
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BU of 6nsx by Molmil
Yeast Hsh155 Ligand bound to Human Tat-SF1 Motif
分子名称: CHLORIDE ION, HIV Tat-specific factor 1, Hsh155
著者Jenkins, J.L, Leach, J.R, Kielkopf, C.L.
登録日2019-01-25
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction.
Rna, 25, 2019
1U8F
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BU of 1u8f by Molmil
Crystal Structure Of Human Placental Glyceraldehyde-3-Phosphate Dehydrogenase At 1.75 Resolution
分子名称: Glyceraldehyde-3-phosphate dehydrogenase, liver, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Jenkins, J.L, Tanner, J.J.
登録日2004-08-05
公開日2005-08-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase.
Acta Crystallogr.,Sect.D, 62, 2006
7REX
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BU of 7rex by Molmil
PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MAGNESIUM ION, RNA (34-MER)
著者Jenkins, J.L, Schroeder, G.M, Wedekind, J.E.
登録日2021-07-13
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control
Nat Commun, 13, 2022
7S3A
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BU of 7s3a by Molmil
Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide
分子名称: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit
著者Jenkins, J.L, Henderson, S, Kielkopf, C.L.
登録日2021-09-05
公開日2022-05-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal.
Nucleic Acids Res., 50, 2022
7S3B
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BU of 7s3b by Molmil
Crystal structure of intact U2AF65 RRM-region bound to AdML-G5 oligonucleotide
分子名称: DI(HYDROXYETHYL)ETHER, DNA/RNA (5'-R(P*UP*UP*(UD)P*GP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit
著者Jenkins, J.L, Henderson, S, Kielkopf, C.L.
登録日2021-09-05
公開日2022-05-25
最終更新日2022-06-29
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal.
Nucleic Acids Res., 50, 2022
7SLI
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BU of 7sli by Molmil
Engineered sperm whale myoglobin-based carbene transferase MbBTIC-C2
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Jenkins, J.L, Vargas, D, Ren, X, Fasan, R.
登録日2021-10-24
公開日2023-05-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Enzymatic Strategy Towards the Construction of sp3-rich Complex Molecules Assisted by Computational Methods
To Be Published
7SLH
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BU of 7slh by Molmil
Engineered sperm whale myoglobin-based carbene transferase MbBTIC-C3
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Jenkins, J.L, Vargas, D, Ren, X, Fasan, R.
登録日2021-10-24
公開日2023-05-03
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Enzymatic Strategy Towards the Construction of sp3-rich Complex Molecules Assisted by Computational Methods
To Be Published
3Q51
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BU of 3q51 by Molmil
Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.
分子名称: MAGNESIUM ION, PREQ1 RIBOSWITCH, SULFATE ION
著者Wedekind, J.E, Jenkins, J.L, Krucinska, J.
登録日2010-12-26
公開日2011-05-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.
J.Biol.Chem., 286, 2011
1JN4
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BU of 1jn4 by Molmil
The Crystal Structure of Ribonuclease A in complex with 2'-deoxyuridine 3'-pyrophosphate (P'-5') adenosine
分子名称: ADENOSINE-5'-[TRIHYDROGEN DIPHOSPHATE] P'-3'-ESTER WITH 2'-DEOXYURIDINE, Pancreatic Ribonuclease A
著者Jardine, A.M, Leonidas, D.D, Jenkins, J.L, Park, C, Raines, R.T, Acharya, K.R, Shapiro, R.
登録日2001-07-23
公開日2003-06-03
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Cleavage of 3',5'-Pyrophosphate-Linked Dinucleotides by Ribonuclease A and Angiogenin
Biochemistry, 40, 2001
4TU8
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BU of 4tu8 by Molmil
STRUCTURE OF U2AF65 VARIANT WITH BRU5A6 DNA
分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DA*U)-3'), ...
著者MCLAUGHLIN, K.J, JENKINS, J.L, Agrawal, A.A, KIELKOPF, C.L.
登録日2014-06-24
公開日2014-11-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.918 Å)
主引用文献Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.
Proc.Natl.Acad.Sci.USA, 111, 2014

 

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