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PDB: 84 results

2YKX
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BU of 2ykx by Molmil
Structural Determinants of the Beta-Selectivity of a Bacterial Aminotransferase
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, BETA-TRANSAMINASE, ...
Authors:Wybenga, G.G, Crismaru, C.G, Janssen, D.B, Dijkstra, B.W.
Deposit date:2011-05-30
Release date:2012-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Determinants of the Beta-Selectivity of a Bacterial Aminotransferase.
J.Biol.Chem., 287, 2012
5NH9
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BU of 5nh9 by Molmil
Crystal structure of xylose isomerase from Piromyces E2 in complex with two Mn2+ ions and xylose
Descriptor: D-xylose, MANGANESE (II) ION, SULFATE ION, ...
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2017-03-21
Release date:2017-11-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography.
Biochemistry, 56, 2017
5AC3
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BU of 5ac3 by Molmil
Crystal structure of PAM12A
Descriptor: ACETIC ACID, CADMIUM ION, PEPTIDE AMIDASE
Authors:Wu, B, Wijma, H.J, Song, L, Rozeboom, H.J, Poloni, C, Tian, Y, Arif, M.I, Nuijens, T, Quadflieg, P.J.L.M, Szymanski, W, Feringa, B.L, Janssen, D.B.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Versatile Peptide C-Terminal Functionalization Via a Computationally Peptide Amidase
Acs Catalysis, 2016
6G4B
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BU of 6g4b by Molmil
Crystal structure of the omega transaminase from Pseudomonas jessenii in the apo form, crystallized from succinate
Descriptor: Aspartate aminotransferase family protein, GLYCEROL, SUCCINIC ACID
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2018-03-27
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.
Febs J., 286, 2019
5NHB
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BU of 5nhb by Molmil
Crystal structure of xylose isomerase from Piromyces E2 in complex with two Fe2+ ions
Descriptor: FE (II) ION, SULFATE ION, Xylose isomerase
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2017-03-21
Release date:2017-11-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography.
Biochemistry, 56, 2017
5NHA
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BU of 5nha by Molmil
Crystal structure of xylose isomerase from Piromyces sp. E2 in complex with two Mn2+ ions and sorbitol
Descriptor: MANGANESE (II) ION, SULFATE ION, Xylose isomerase, ...
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2017-03-21
Release date:2017-11-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography.
Biochemistry, 56, 2017
2B4K
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BU of 2b4k by Molmil
Acetobacter turbidans alpha-amino acid ester hydrolase complexed with phenylglycine
Descriptor: Alpha-amino acid ester hydrolase, D-PHENYLGLYCINE, GLYCEROL
Authors:Barends, T.R.M, Polderman-Tijmes, J.J, Jekel, P.A, Williams, C, Wybenga, G, Janssen, D.B, Dijkstra, B.W.
Deposit date:2005-09-26
Release date:2005-12-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Acetobacter turbidans alpha-amino acid ester hydrolase: how a single mutation improves an antibiotic-producing enzyme.
J.Biol.Chem., 281, 2006
5NH4
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BU of 5nh4 by Molmil
Crystal structure of xylose isomerase from Piromyces E2 in complex with one Mg2+ ions and glycerol
Descriptor: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2017-03-21
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography.
Biochemistry, 56, 2017
1EHY
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BU of 1ehy by Molmil
X-ray structure of the epoxide hydrolase from agrobacterium radiobacter ad1
Descriptor: POTASSIUM ION, PROTEIN (SOLUBLE EPOXIDE HYDROLASE)
Authors:Nardini, M, Ridder, I.S, Rozeboom, H.J, Kalk, K.H, Rink, R, Janssen, D.B, Dijkstra, B.W.
Deposit date:1998-10-17
Release date:1999-10-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The x-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1. An enzyme to detoxify harmful epoxides.
J.Biol.Chem., 274, 1999
1NX9
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Acetobacter turbidans alpha-amino acid ester hydrolase S205A mutant complexed with ampicillin
Descriptor: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID, GLYCEROL, alpha-amino acid ester hydrolase
Authors:Barends, T.R.M, Polderman-Tijmes, J.J, Jekel, P.A, Janssen, D.B, Dijkstra, B.W.
Deposit date:2003-02-10
Release date:2004-03-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Acetobacter turbidans {alpha}-Amino Acid Ester Hydrolase: HOW A SINGLE MUTATION IMPROVES AN ANTIBIOTIC-PRODUCING ENZYME.
J.Biol.Chem., 281, 2006
1PWZ
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BU of 1pwz by Molmil
Crystal structure of the haloalcohol dehalogenase HheC complexed with (R)-styrene oxide and chloride
Descriptor: CHLORIDE ION, R-STYRENE OXIDE, halohydrin dehalogenase
Authors:de Jong, R.M, Tiesinga, J.J.W, Rozeboom, H.J, Kalk, K.H, Tang, L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2003-07-02
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mechanism of a Bacterial Haloalcohol Dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site
EMBO J., 22, 2003
4CQ5
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BU of 4cq5 by Molmil
Structural Investigations into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus chinensis
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, PHENYLALANINE AMINOMUTASE, ...
Authors:Wybenga, G.G, Szymanski, W, Wu, B, Feringa, B.L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2014-02-11
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
Biochemistry, 53, 2014
5OX2
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BU of 5ox2 by Molmil
Crystal structure of thymoligase, a substrate-tailored peptiligase variant
Descriptor: Fragment of prodomain, SULFATE ION, Subtilisin BPN'
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2017-09-05
Release date:2018-01-10
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Design of a substrate-tailored peptiligase variant for the efficient synthesis of thymosin-alpha1.
Org. Biomol. Chem., 16, 2018
1ZMT
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BU of 1zmt by Molmil
Structure of haloalcohol dehalogenase HheC of Agrobacterium radiobacter AD1 in complex with (R)-para-nitro styrene oxide, with a water molecule in the halide-binding site
Descriptor: (R)-PARA-NITROSTYRENE OXIDE, Haloalcohol dehalogenase HheC
Authors:de Jong, R.M, Tiesinga, J.J.W, Villa, A, Tang, L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2005-05-10
Release date:2005-10-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for the Enantioselectivity of an Epoxide Ring Opening Reaction Catalyzed by Halo Alcohol Dehalogenase HheC.
J.Am.Chem.Soc., 127, 2005
3ZN2
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BU of 3zn2 by Molmil
protein engineering of halohydrin dehalogenase
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, HALOHYDRIN DEHALOGENASE, ...
Authors:Schallmey, M, Jekel, P, Tang, L, Majeric-Elenkov, M, Hoeffken, H.W, Hauer, B, Janssen, D.B.
Deposit date:2013-02-13
Release date:2014-03-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Single Point Mutation Enhances Hydroxynitrile Synthesis by Halohydrin Dehalogenase.
Enzyme.Microb.Technol., 70, 2015
1ZO8
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BU of 1zo8 by Molmil
X-ray Structure of the haloalcohol dehalogenase HheC of Agrobacterium radiobacter AD1 in complex with (S)-para-nitrostyrene oxide, with a water molecule in the halide-binding site
Descriptor: (S)-PARA-NITROSTYRENE OXIDE, halohydrin dehalogenase
Authors:de Jong, R.M, Tiesinga, J.J.W, Tang, L, Villa, A, Janssen, D.B, Dijkstra, B.W.
Deposit date:2005-05-12
Release date:2005-10-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Enantioselectivity of an Epoxide Ring Opening Reaction Catalyzed by Halo Alcohol Dehalogenase HheC.
J.Am.Chem.Soc., 127, 2005
3ZVI
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BU of 3zvi by Molmil
Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant L384A
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Raj, H, Szymanski, W, de Villiers, J, Rozeboom, H.J, Veetil, V.P, Reis, C.R, de Villiers, M, de Wildeman, S, Dekker, F.J, Quax, W.J, Thunnissen, A.M.W.H, Feringa, B.L, Janssen, D.B, Poelarends, G.J.
Deposit date:2011-07-25
Release date:2012-05-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering Methylaspartate Ammonia Lyase for the Asymmetric Synthesis of Unnatural Amino Acids.
Nat.Chem., 4, 2012
3ZVH
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BU of 3zvh by Molmil
Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant Q73A
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Raj, H, Szymanski, W, de Villiers, J, Rozeboom, H.J, Veetil, V.P, Reis, C.R, de Villiers, M, de Wildeman, S, Dekker, F.J, Quax, W.J, Thunnissen, A.M.W.H, Feringa, B.L, Janssen, D.B, Poelarends, G.J.
Deposit date:2011-07-25
Release date:2012-05-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering Methylaspartate Ammonia Lyase for the Asymmetric Synthesis of Unnatural Amino Acids.
Nat.Chem., 4, 2012
4AO4
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BU of 4ao4 by Molmil
Structural Determinants of the beta-Selectivity of a Bacterial Aminotransferase
Descriptor: (3R)-3-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]-5-METHYLHEXANOIC ACID, 1,2-ETHANEDIOL, Beta-transaminase
Authors:Wybenga, G.G, Crismaru, C.G, Janssen, D.B, Dijkstra, B.W.
Deposit date:2012-03-23
Release date:2012-06-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural determinants of the beta-selectivity of a bacterial aminotransferase.
J. Biol. Chem., 287, 2012
4C5R
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BU of 4c5r by Molmil
Structural Investigations into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus chinensis
Descriptor: (3S)-3-amino-2,2-difluoro-3-phenylpropanoic acid, GLYCEROL, PHENYLALANINE AMMONIA-LYASE
Authors:Wybenga, G.G, Szymanski, W, Wu, B, Feringa, B.L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2013-09-16
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
Biochemistry, 53, 2014
4C5S
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BU of 4c5s by Molmil
Structural Investigations into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus chinensis
Descriptor: (3S)-3-amino-2,2-difluoro-3-phenylpropanoic acid, PHENYLALANINE AMMONIA-LYASE
Authors:Wybenga, G.G, Szymanski, W, Wu, B, Feringa, B.L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2013-09-16
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
Biochemistry, 53, 2014
4AOA
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BU of 4aoa by Molmil
Biochemical properties and crystal structure of a novel beta- phenylalanine aminotransferase from Variovorax paradoxus
Descriptor: 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE, BETA-PHENYLALANINE AMINOTRANSFERASE, GLYCEROL
Authors:Crismaru, C.G, Wybenga, G.G, Szymanski, W, Wijma, H.J, Wu, B, deWildeman, S, Poelarends, G.J, Dijkstra, B.W, Janssen, D.B.
Deposit date:2012-03-25
Release date:2012-10-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Biochemical Properties and Crystal Structure of a Beta-Phenylalanine Aminotransferase from Variovorax Paradoxus.
Appl.Environ.Microbiol., 79, 2013
1PWX
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BU of 1pwx by Molmil
Crystal structure of the haloalcohol dehalogenase HheC complexed with bromide
Descriptor: BROMIDE ION, halohydrin dehalogenase
Authors:de Jong, R.M, Tiesinga, J.J.W, Rozeboom, H.J, Kalk, K.H, Tang, L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2003-07-02
Release date:2003-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Mechanism of a Bacterial Haloalcohol Dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site
EMBO J., 22, 2003
1PX0
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BU of 1px0 by Molmil
Crystal structure of the haloalcohol dehalogenase HheC complexed with the haloalcohol mimic (R)-1-para-nitro-phenyl-2-azido-ethanol
Descriptor: (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL, halohydrin dehalogenase
Authors:de Jong, R.M, Tiesinga, J.J.W, Rozeboom, H.J, Kalk, K.H, Tang, L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2003-07-02
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Mechanism of a Bacterial Haloalcohol Dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site
EMBO J., 22, 2003
4AO9
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BU of 4ao9 by Molmil
Biochemical properties and crystal structure of a novel beta- phenylalanine aminotransferase from Variovorax paradoxus
Descriptor: BETA-PHENYLALANINE AMINOTRANSFERASE, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE
Authors:Crismaru, C.G, Wybenga, G.G, Szymanski, W, Wijma, H.J, Wu, B, deWildeman, S, Poelarends, G.J, Dijkstra, B.W, Janssen, D.B.
Deposit date:2012-03-25
Release date:2012-10-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Biochemical Properties and Crystal Structure of a Novel Beta-Phenylalanine Aminotransferase from Variovorax Paradoxus
Appl.Environ.Microbiol., 79, 2013

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