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PDB: 3272 件
6G6M
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BU of 6g6m by Molmil
Crystal structure of the computationally designed Tako8 protein in P42212
分子名称: SULFATE ION, Tako8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6Q
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BU of 6g6q by Molmil
Crystal structure of the computationally designed Ika4 protein
分子名称: Ika4
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6P
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BU of 6g6p by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.2 in P63
分子名称: Ika8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6O
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BU of 6g6o by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63
分子名称: GLYCEROL, Ika8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6LF1
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BU of 6lf1 by Molmil
SeviL, a GM1b/asialo-GM1 binding lectin
分子名称: CHLORIDE ION, SeviL
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
6LF2
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BU of 6lf2 by Molmil
SeviL bound to asialo-GM1 saccharide
分子名称: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
1RKM
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BU of 1rkm by Molmil
STRUCTURE OF OPPA
分子名称: OLIGO-PEPTIDE BINDING PROTEIN
著者Sleigh, S.H, Tame, J.R.H, Wilkinson, A.J.
登録日1997-03-25
公開日1997-07-29
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Peptide binding in OppA, the crystal structures of the periplasmic oligopeptide binding protein in the unliganded form and in complex with lysyllysine.
Biochemistry, 36, 1997
5HVZ
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BU of 5hvz by Molmil
Crystal structure of smAKAP AKB domain bound RIa dimerization/docking (D/D) complex at 2.0 A resolution
分子名称: Small membrane A-kinase anchor protein, cAMP-dependent protein kinase type I-alpha regulatory subunit
著者Wu, J, Burgers, P.P, Bruystens, J, Heck, A.J.R, Taylor, S.S.
登録日2016-01-28
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of smAKAP and its regulation by PKA-mediated phosphorylation.
Febs J., 283, 2016
1UAN
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BU of 1uan by Molmil
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8
分子名称: hypothetical protein TT1542
著者Handa, N, Terada, T, Tame, J.R.H, Park, S.-Y, Kinoshita, K, Ota, M, Nakamura, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-03-12
公開日2003-08-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8
PROTEIN SCI., 12, 2003
6AB9
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BU of 6ab9 by Molmil
The crystal structure of the relaxed state of Nonlabens marinus Rhodopsin 3
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
著者Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y.
登録日2018-07-20
公開日2019-07-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The pumping mechanism of NM-R3, a light-driven cyanobacterial chloride importer in the rhodopsin family
To Be Published
5I1Y
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BU of 5i1y by Molmil
NvPizza2-H16S58 with cobalt
分子名称: COBALT (II) ION, SULFATE ION, nvPizz2a-H16S58
著者Tame, J.R.H, Voet, A.R.D.
登録日2016-02-07
公開日2017-02-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献NvPizza2-H16S58 with cobalt
To Be Published
6ABA
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BU of 6aba by Molmil
The crystal structure of the photoactivated state of Nonlabens marinus Rhodopsin 3
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
著者Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y.
登録日2018-07-20
公開日2019-07-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.797 Å)
主引用文献The pumping mechanism of NM-R3, a light-driven marine bacterial chloride importer in the rhodopsin family
To Be Published
5IOM
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BU of 5iom by Molmil
Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni is space group P6322
分子名称: Nucleoside diphosphate kinase
著者Torini, J.R.S, Romanello, L, Bird, L.E, Nettleship, J.E, Owens, R.J, Aller, P, DeMarco, R, Brandao-Neto, J, Pereira, H.M.
登録日2016-03-08
公開日2017-08-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Characterization of a Schistosoma mansoni NDPK expressed in sexual and digestive organs.
Mol.Biochem.Parasitol., 2019
5IOL
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BU of 5iol by Molmil
Crystal structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni
分子名称: Nucleoside diphosphate kinase
著者Torini, J.R.S, Romanello, L, Bird, L.E, Nettleship, J.E, Owens, R.J, Aller, P, DeMarco, R, Brandao-Neto, J, Pereira, H.M.
登録日2016-03-08
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.741 Å)
主引用文献Characterization of a Schistosoma mansoni NDPK expressed in sexual and digestive organs.
Mol.Biochem.Parasitol., 2019
1UEK
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BU of 1uek by Molmil
Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
分子名称: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
著者Wada, T, Kuramitsu, S, Yokoyama, S, Tame, J.R.H, Park, S.Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-17
公開日2003-06-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an Enzyme in the Non-mevalonate Pathway of Isoprenoid Synthesis.
J.Biol.Chem., 278, 2003
5I1Z
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BU of 5i1z by Molmil
Structure of nvPizza2-H16S58
分子名称: SULFATE ION, nvPizza2-H16S58
著者Tame, J.R.H, Voet, A.R.D.
登録日2016-02-07
公開日2017-02-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Broken Symmetry: Partial domain swapping in an artificial trimeric protein
To Be Published
5IPF
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BU of 5ipf by Molmil
Crystal structure of Hypoxanthine-guanine phosphoribosyltransferase from Schistosoma mansoni in complex with IMP
分子名称: Hypoxanthine-guanine phosphoribosyltransferase (HGPRT), INOSINIC ACID
著者Romanello, L, Torini, J.R.S, Bird, L.E, Nettleship, J.E, Owens, R.J, DeMarco, R, Pereira, H.M, Brandao-Neto, J.
登録日2016-03-09
公開日2017-03-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献In vitro and in vivo characterization of the multiple isoforms of Schistosoma mansoni hypoxanthine-guanine phosphoribosyltransferases.
Mol. Biochem. Parasitol., 229, 2019
5JEI
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BU of 5jei by Molmil
Crystal structure of the GluA2 LBD in complex with FW
分子名称: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID, ...
著者Eibl, C, Salazar, H, Chebli, M, Plested, A.J.R.
登録日2016-04-18
公開日2017-02-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.229 Å)
主引用文献Mechanism of partial agonism in AMPA-type glutamate receptors.
Nat Commun, 8, 2017
1UIU
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BU of 1uiu by Molmil
Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel unliganded form)
分子名称: Nickel-binding periplasmic protein
著者Heddle, J, Scott, D.J, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2003-07-22
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli
J.Biol.Chem., 278, 2003
1UIV
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BU of 1uiv by Molmil
Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel liganded form)
分子名称: NICKEL (II) ION, Nickel-binding periplasmic protein
著者Heddle, J, Scott, D.J, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2003-07-22
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli
J.Biol.Chem., 278, 2003
1UIW
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BU of 1uiw by Molmil
Crystal Structures of Unliganded and Half-Liganded Human Hemoglobin Derivatives Cross-Linked between Lys 82beta1 and Lys 82beta2
分子名称: BUT-2-ENEDIAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
著者Park, S.-Y, Shibayama, N, Tame, J.R.H.
登録日2003-07-23
公開日2003-08-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between Lys 82beta1 and Lys 82beta2
Biochemistry, 43, 2004
6NU7
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BU of 6nu7 by Molmil
Structure of sucrose-6-phosphate hydrolase from Lactobacillus gasseri
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SODIUM ION, ...
著者Lima, M.Z.T, Muniz, J.R.C.
登録日2019-01-31
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of sucrose-6-phosphate hydrolase from Lactobacillus gasseri
To Be Published
6NOB
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BU of 6nob by Molmil
Structure of Glycoside Hydrolase family 32 from Bifidobacterium adolescentis
分子名称: 1,2-ETHANEDIOL, Beta-fructofuranosidase, DI(HYDROXYETHYL)ETHER
著者Mera, A.M, Lima, M.Z.T, Muniz, J.R.C.
登録日2019-01-16
公開日2020-01-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Structure of GH32 from Bifidobacterium adolescentis
To Be Published
6NU8
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BU of 6nu8 by Molmil
Structure of sucrose-6-phosphate hydrolase from Lactobacillus gasseri in complex with fructose
分子名称: 1,2-ETHANEDIOL, Sucrose-6-phosphate hydrolase, beta-D-fructofuranose
著者Lima, M.Z.T, Muniz, J.R.C.
登録日2019-01-31
公開日2020-02-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of sucrose-6-phosphate hydrolase from Lactobacillus gasseri in complex with fructose
To Be Published
6NUN
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Structure of GH32 hydrolase from Bifidobacterium adolescentis in complex with frutose
分子名称: 1,2-ETHANEDIOL, Beta-fructofuranosidase, beta-D-fructofuranose
著者Lima, M.Z.T, Muniz, J.R.C.
登録日2019-02-01
公開日2020-02-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structure of GH32 from Bifidobacterium adolescentis in complex with fructose
To Be Published

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