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PDB: 3278 件
6PBX
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Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 3-13 deletion mutant bound to calmodulin (conformation 2)
分子名称: Calmodulin-1, Potassium voltage-gated channel subfamily H member 1
著者Whicher, J.R, MacKinnon, R.
登録日2019-06-14
公開日2019-09-18
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Regulation of Eag1 gating by its intracellular domains.
Elife, 8, 2019
2ZO0
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BU of 2zo0 by Molmil
mouse NP95 SRA domain DNA specific complex 1
分子名称: DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), E3 ubiquitin-protein ligase UHRF1
著者Hashimoto, H, Horton, J.R, Cheng, X.
登録日2008-05-05
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix
Nature, 455, 2008
2XGJ
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Structure of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT RNA HELICASE DOB1, RNA (5'-(*AP*AP*AP*AP*A)-3')
著者Weir, J.R, Bonneau, F, Hentschel, J, Conti, E.
登録日2010-06-04
公開日2010-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Analysis Reveals the Characteristic Features of Mtr4, a Dexh Helicase Involved in Nuclear RNA Processing and Surveillance.
Proc.Natl.Acad.Sci.USA, 107, 2010
8FFT
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BU of 8fft by Molmil
Structure of GntC, a PLP-dependent enzyme catalyzing L-enduracididine biosynthesis from (S)-4-hydroxy-L-arginine
分子名称: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, MAGNESIUM ION
著者Chen, P.Y.-T, Lima, S.T, Chekan, J.R, Moore, B.S.
登録日2022-12-10
公開日2023-04-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mechanistic and Structural Insights into a Divergent PLP-Dependent l-Enduracididine Cyclase from a Toxic Cyanobacterium.
Acs Catalysis, 13, 2023
6PBD
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BU of 6pbd by Molmil
DNA N6-Adenine Methyltransferase CcrM In Complex with Double-Stranded DNA Oligonucleotide Containing Its Recognition Sequence GAATC
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*TP*CP*AP*AP*TP*GP*AP*AP*TP*CP*CP*CP*AP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*TP*GP*GP*GP*AP*TP*TP*CP*AP*TP*TP*GP*AP*AP*TP*C)-3'), ...
著者Horton, J.R, Cheng, X, Woodcock, C.B.
登録日2019-06-13
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.343 Å)
主引用文献The cell cycle-regulated DNA adenine methyltransferase CcrM opens a bubble at its DNA recognition site.
Nat Commun, 10, 2019
2NQ3
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BU of 2nq3 by Molmil
Crystal structure of the C2 Domain of Human Itchy Homolog E3 Ubiquitin Protein Ligase
分子名称: CHLORIDE ION, Itchy homolog E3 ubiquitin protein ligase
著者Walker, J.R, Avvakumov, G.V, Xue, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2006-10-30
公開日2006-11-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The C2 Domain of Human Itchy Homolog E3 Ubiquitin Protein Ligase
To be Published
2XL2
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BU of 2xl2 by Molmil
WDR5 IN COMPLEX WITH AN RBBP5 PEPTIDE RECRUITED TO NOVEL SITE
分子名称: GLYCEROL, RETINOBLASTOMA-BINDING PROTEIN 5, WD REPEAT-CONTAINING PROTEIN 5
著者Odho, Z, Southall, S.M, Wilson, J.R.
登録日2010-07-19
公開日2010-08-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Characterisation of a Novel Wdr5 Binding Site that Recruits Rbbp5 Through a Conserved Motif and Enhances Methylation of H3K4 by Mll1.
J.Biol.Chem., 285, 2010
8FCN
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Cryo-EM structure of p97:UBXD1 VIM-only state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023
2CIJ
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BU of 2cij by Molmil
membrane-bound glutamate carboxypeptidase II (GCPII) with bound methionine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Barinka, C, Plechanovova, A, Rulisek, L, Mlcochova, P, Majer, P, Slusher, B.S, Hilgenfeld, R, Mesters, J.R, Konvalinka, J.
登録日2006-03-21
公開日2007-03-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Glutamate Carboxypeptidase II
Handbook of Metalloproteins, 4, 2011
6GNV
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Crystal Structure of Leishmania major N-Myristoyltransferase (NMT) With Bound Myristoyl-CoA and a isopropyl methyl indole aryl sulphonamide ligand
分子名称: GLYCEROL, Glycylpeptide N-tetradecanoyltransferase, TETRADECANOYL-COA, ...
著者Robinson, D.A, Harrison, J.R, Brand, S, Smith, V.C, Thompson, S, Smith, A, Davies, K, Mok, N.Y, Torrie, L.S, Collie, I, Hallyburton, I, Norval, S, Simeons, F.R.C, Stojanovski, L, Frearson, J.A, Brenk, R, Wyatt, P.G, Gilbert, I.H, Read, K.D.
登録日2018-05-31
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Molecular Hybridization Approach for the Design of Potent, Highly Selective, and Brain-Penetrant N-Myristoyltransferase Inhibitors.
J. Med. Chem., 61, 2018
6GQI
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Thermocrispum municipale cyclohexanone monooxygenase bound to hexanoic acid
分子名称: ACETATE ION, Cyclohexanone Monooxygenase from Thermocrispum municipale, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Mattevi, A, Gomez Castellanos, J.R.
登録日2018-06-07
公開日2018-12-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Side-Chain Pruning Has Limited Impact on Substrate Preference in a Promiscuous Enzyme.
ACS Catal, 8, 2018
6GNH
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Crystal Structure of Leishmania major N-Myristoyltransferase (NMT) With Bound Myristoyl-CoA and an Azepanyl Phenyl Benzylsulphonamide Ligand
分子名称: Glycylpeptide N-tetradecanoyltransferase, TETRADECANOYL-COA, methyl 4-(azepan-1-yl)-3-[(4-methoxyphenyl)sulfonylamino]benzoate
著者Robinson, D.A, Harrison, J.R, Brand, S, Smith, V.C, Thompson, S, Smith, A, Davies, K, Mok, N.Y, Torrie, L.S, Collie, I, Hallyburton, I, Norval, S, Simeons, F.R.C, Stojanovski, L, Frearson, J.A, Brenk, R, Wyatt, P.G, Gilbert, I.H, Read, K.D.
登録日2018-05-30
公開日2018-09-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献A Molecular Hybridization Approach for the Design of Potent, Highly Selective, and Brain-Penetrant N-Myristoyltransferase Inhibitors.
J. Med. Chem., 61, 2018
6GJQ
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BU of 6gjq by Molmil
human NBD1 of CFTR in complex with nanobody T27
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, Nanobody T27
著者Sigoillot, M, Overtus, M, Grodecka, M, Scholl, D, Garcia-Pino, A, Laeremans, T, He, L, Pardon, E, Hildebrandt, E, Urbatsch, I, Steyaert, J, Riordan, J.R, Govaerts, C.
登録日2018-05-16
公開日2019-06-19
最終更新日2019-08-21
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Domain-interface dynamics of CFTR revealed by stabilizing nanobodies.
Nat Commun, 10, 2019
6QA2
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BU of 6qa2 by Molmil
R80A MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
分子名称: Nucleoside diphosphate kinase, SULFATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE
著者Dautant, A, Henri, J, Wales, T.E, Meyer, P, Engen, J.R, Georgescauld, F.
登録日2018-12-18
公開日2019-02-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange.
Biochemistry, 58, 2019
8FCR
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BU of 8fcr by Molmil
Cryo-EM structure of p97:UBXD1 H4-bound state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (4.12 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023
8FCQ
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Cryo-EM structure of p97:UBXD1 PUB-in state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.93 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023
8FCM
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BU of 8fcm by Molmil
Cryo-EM structure of p97:UBXD1 open state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023
6FIE
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BU of 6fie by Molmil
Crystallographic structure of calcium loaded Calbindin-D28K.
分子名称: CALCIUM ION, Calbindin, THIOCYANATE ION
著者Noble, J.W, Almalki, R, Roe, S.M, Wagner, A, Dumanc, R, Atack, J.R.
登録日2018-01-18
公開日2018-10-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献The X-ray structure of human calbindin-D28K: an improved model.
Acta Crystallogr D Struct Biol, 74, 2018
6GJT
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Chlamydia protein Pgp3 studied at high resolution in a new crystal form
分子名称: BROMIDE ION, POTASSIUM ION, Virulence plasmid protein pGP3-D
著者Helliwell, J.R.
登録日2018-05-17
公開日2018-07-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Chlamydia protein Pgp3 studied at high resolution in a new crystal form.
IUCrJ, 5, 2018
6GKD
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human NBD1 of CFTR in complex with nanobodies D12 and G3a
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, GLYCEROL, ...
著者Sigoillot, M, Overtus, M, Grodecka, M, Scholl, D, Garcia-Pino, A, Laeremans, T, He, L, Pardon, E, Hildebrandt, E, Urbatsch, I, Steyaert, J, Riordan, J.R, Govaerts, C.
登録日2018-05-18
公開日2019-06-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Domain-interface dynamics of CFTR revealed by stabilizing nanobodies.
Nat Commun, 10, 2019
5CYF
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Crystal structure of isoform 2 of uridine phosphorylase from Schistosoma mansoni in complex with citrate
分子名称: CITRATE ANION, Putative uridine phosphorylase
著者Romanello, L, Torini, J.R, DeMarco, R, Pereira, H.M.
登録日2015-07-30
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.983 Å)
主引用文献Analysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function.
Biochimie, 125, 2016
4B6M
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BU of 4b6m by Molmil
Trypansoma brucei tubulin binding cofactor B CAP-Gly domain
分子名称: FORMIC ACID, TUBULIN-SPECIFIC CHAPERONE, PUTATIVE
著者Fleming, J.R, Morgan, R.E, Hunter, W.N.
登録日2012-08-14
公開日2012-10-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献The Architecture of Trypanosoma Brucei Tubulin-Binding Cofactor B and Implications for Function.
FEBS J., 280, 2013
4AU7
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BU of 4au7 by Molmil
The structure of the Suv4-20h2 ternary complex with histone H4
分子名称: 1,2-ETHANEDIOL, HISTONE H4 PEPTIDE, HISTONE-LYSINE N-METHYLTRANSFERASE SUV420H2, ...
著者Southall, S.M, Cronin, N.B, Wilson, J.R.
登録日2012-05-14
公開日2013-05-22
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献A Novel Route to Product Specificity in the Suv4-20 Family of Histone H4K20 Methyltransferases.
Nucleic Acids Res., 42, 2014
4CHJ
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Structure of Inner Membrane Complex (IMC) Sub-compartment Protein 3 (ISP3) from Toxoplasma gondii
分子名称: IMC SUB-COMPARTMENT PROTEIN ISP3
著者Tonkin, M.L, Beck, J.R, Bradley, P.J, Boulanger, M.J.
登録日2013-12-03
公開日2014-04-09
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献The Inner Membrane Complex Sub-Compartment Proteins Critical for Replication of the Apicomplexan Parasite Toxoplasma Gondii Adopt a Pleckstrin Homology Fold
J.Biol.Chem., 289, 2014
8FCT
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Cryo-EM structure of p97:UBXD1 lariat mutant
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023

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