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PDB: 5628 results

3G2X
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Structure of mimivirus NDK +Kpn - N62L double mutant complexed with dTDP
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2009-02-01
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3EMT
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BU of 3emt by Molmil
Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-09-25
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
2GVM
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Crystal structure of hydrophobin HFBI with detergent
Descriptor: Hydrophobin-1, LAURYL DIMETHYLAMINE-N-OXIDE, ZINC ION
Authors:Hakanpaa, J.M, Rouvinen, J.
Deposit date:2006-05-03
Release date:2006-08-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Two crystal structures of Trichoderma reesei hydrophobin HFBI--The structure of a protein amphiphile with and without detergent interaction.
Protein Sci., 15, 2006
3GBW
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Crystal structure of the first PHR domain of the Mouse Myc-binding protein 2 (MYCBP-2)
Descriptor: E3 ubiquitin-protein ligase MYCBP2
Authors:Sampathkumar, P, Ozyurt, S.A, Wasserman, S.R, Klemke, R.L, Miller, S.A, Bain, K.T, Rutter, M.E, Tarun, G, Atwell, S, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-02-20
Release date:2009-03-24
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1.
J.Mol.Biol., 397, 2010
3E2K
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BU of 3e2k by Molmil
Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
3NO0
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Aquifex aeolicus type IIA topoisomerase C-terminal domain
Descriptor: DNA gyrase subunit A, GLYCEROL, NITRATE ION
Authors:Tretter, E.M, Lerman, J.C, Berger, J.M.
Deposit date:2010-06-24
Release date:2010-12-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3004 Å)
Cite:A naturally chimeric type IIA topoisomerase in Aquifex aeolicus highlights an evolutionary path for the emergence of functional paralogs.
Proc.Natl.Acad.Sci.USA, 107, 2010
3E3M
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BU of 3e3m by Molmil
Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi
Descriptor: Transcriptional regulator, LacI family
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Iizuka, M, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-08-07
Release date:2008-08-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi
To be Published
4DKP
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BU of 4dkp by Molmil
Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AWS-I-50
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-[(1S,2S)-2-amino-2,3-dihydro-1H-inden-1-yl]-N'-(4-chloro-3-fluorophenyl)ethanediamide, ...
Authors:Kwon, Y.D, LaLonde, J.M, Jones, D.M, Sun, A.W, Courter, J.R, Soeta, T, Kobayashi, T, Princiotto, A.M, Wu, X, Mascola, J, Schon, A, Freire, E, Sodroski, J, Madani, N, Smith III, A.B, Kwong, P.D.
Deposit date:2012-02-03
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7978 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors.
J.Med.Chem., 55, 2012
3NTB
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Structure of 6-methylthio naproxen analog bound to mCOX-2.
Descriptor: (2S)-2-[6-(methylsulfanyl)naphthalen-2-yl]propanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Duggan, K.C, Musee, J, Walters, M.J, Harp, J.M, Kiefer, J.R, Oates, J.A, Marnett, L.J.
Deposit date:2010-07-03
Release date:2010-09-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Molecular basis for cyclooxygenase inhibition by the non-steroidal anti-inflammatory drug naproxen.
J.Biol.Chem., 285, 2010
3NT1
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High resolution structure of naproxen:COX-2 complex.
Descriptor: (2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Duggan, K.C, Musee, J, Walters, M.J, Harp, J.M, Kiefer, J.R, Oates, J.A, Marnett, L.J.
Deposit date:2010-07-02
Release date:2010-09-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Molecular basis for cyclooxygenase inhibition by the non-steroidal anti-inflammatory drug naproxen.
J.Biol.Chem., 285, 2010
2H4W
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BU of 2h4w by Molmil
Crystal structure of human caspase-1 (Glu390->Asp) in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK)
Descriptor: Caspase-1, N-[(benzyloxy)carbonyl]-L-valyl-N-[(2S)-1-carboxy-4-fluoro-3-oxobutan-2-yl]-L-alaninamide
Authors:Scheer, J.M, Wells, J.A, Romanowski, M.J.
Deposit date:2006-05-25
Release date:2008-03-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:An allosteric circuit in caspase-1.
J.Mol.Biol., 381, 2008
3ELH
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BU of 3elh by Molmil
X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with dUDP
Descriptor: DEOXYURIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-09-22
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
2H6Y
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BU of 2h6y by Molmil
Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin
Authors:Gavira, J.A, Godoy-Ruiz, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2006-06-01
Release date:2007-05-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group
To be Published
3GH1
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BU of 3gh1 by Molmil
Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae
Descriptor: PHOSPHATE ION, Predicted nucleotide-binding protein
Authors:Malashkevich, V.N, Toro, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-03-02
Release date:2009-03-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae.
To be Published
1NXJ
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BU of 1nxj by Molmil
Structure of Rv3853 from Mycobacterium tuberculosis
Descriptor: GLYOXYLIC ACID, L(+)-TARTARIC ACID, Probable S-adenosylmethionine:2-demethylmenaquinone methyltransferase
Authors:Johnston, J.M, Arcus, V.L, Baker, E.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2003-02-10
Release date:2003-07-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a Putative Methyltransferase from Mycobacterium tuberculosis: Misannotation of a Genome Clarified by Protein Structural Analysis
J.Bacteriol., 185, 2003
4DG2
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BU of 4dg2 by Molmil
Crystal structure of myristoylated WT catalytic subunit of cAMP-dependent protein kinase in complex with SP20
Descriptor: MYRISTIC ACID, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Bastidas, A.C, Steichen, J.M, Taylor, S.S.
Deposit date:2012-01-24
Release date:2012-06-06
Last modified:2013-01-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of N-terminal myristylation in the structure and regulation of cAMP-dependent protein kinase.
J.Mol.Biol., 422, 2012
1O26
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BU of 1o26 by Molmil
Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and dUMP at 1.6 A resolution
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, TRIETHYLENE GLYCOL, ...
Authors:Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG)
Deposit date:2003-02-18
Release date:2003-06-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein
Structure, 11, 2003
1O2B
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BU of 1o2b by Molmil
Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and PO4 at 2.45 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, Thymidylate synthase thyX
Authors:Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG)
Deposit date:2003-02-18
Release date:2003-06-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein
Structure, 11, 2003
3R91
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Macrocyclic lactams as potent Hsp90 inhibitors with excellent tumor exposure and extended biomarker activity.
Descriptor: (6S)-4,6,15,15,18-pentamethyl-5,17-dioxo-2,3,4,5,6,7,14,15,16,17-decahydro-1H-12,8-(metheno)[1,4,9]triazacyclotetradecino[9,8-a]indole-9-carboxamide, Heat shock protein HSP 90-alpha
Authors:Zapf, C.W, Bloom, J.D, McBean, J.L, Dushin, R.G, Nittoli, T, Otteng, M, Ingalls, C, Golas, J.M, Liu, H, Lucas, J, Boschelli, F, Vogan, E, Hu, Y, Levin, J.I.
Deposit date:2011-03-24
Release date:2011-05-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.579 Å)
Cite:Macrocyclic lactams as potent Hsp90 inhibitors with excellent tumor exposure and extended biomarker activity.
Bioorg.Med.Chem.Lett., 21, 2011
2IJD
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BU of 2ijd by Molmil
Crystal Structure of the Poliovirus Precursor Protein 3CD
Descriptor: Picornain 3C, RNA-directed RNA polymerase, SULFATE ION, ...
Authors:Marcotte, L.L, Gohara, D.W, Filman, D.J, Hogle, J.M.
Deposit date:2006-09-29
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structure of poliovirus 3CD: virally-encoded protease and precursor to the RNA-dependent RNA polymerase.
J.Virol., 81, 2007
1P44
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BU of 1p44 by Molmil
Targeting tuberculosis and malaria through inhibition of enoyl reductase: compound activity and structural data
Descriptor: 5-{[4-(9H-FLUOREN-9-YL)PIPERAZIN-1-YL]CARBONYL}-1H-INDOLE, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kuo, M.R, Morbidoni, H.R, Alland, D, Sneddon, S.F, Gourlie, B.B, Staveski, M.M, Leonard, M, Gregory, J.S, Janjigian, A.D, Yee, C, Musser, J.M, Kreiswirth, B, Iwamoto, H, Perozzo, R, Jacobs Jr, W.R, Sacchettini, J.C, Fidock, D.A, TB Structural Genomics Consortium (TBSGC)
Deposit date:2003-04-21
Release date:2003-09-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting tuberculosis and malaria through inhibition of Enoyl reductase: compound activity and structural data.
J.Biol.Chem., 278, 2003
1P4Y
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Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
Descriptor: 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', SODIUM ION
Authors:Hays, F.A, Vargason, J.M, Ho, P.S.
Deposit date:2003-04-24
Release date:2003-09-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry, 42, 2003
2IM5
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BU of 2im5 by Molmil
Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis
Descriptor: Nicotinate phosphoribosyltransferase
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-10-03
Release date:2006-10-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas gingivalis
To be Published
2IJF
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Crystal Structure of the Poliovirus RNA-Dependent RNA Polymerase Fidelity Mutant 3Dpol G64S
Descriptor: RNA-directed RNA polymerase
Authors:Marcotte, L.L, Gohara, D.G, Filman, D.J, Hogle, J.M.
Deposit date:2006-09-29
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of poliovirus 3CD: virally-encoded protease and precursor to the RNA-dependent RNA polymerase.
J.Virol., 81, 2007
3ILW
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BU of 3ilw by Molmil
Structure of DNA gyrase subunit A N-terminal domain
Descriptor: DNA gyrase subunit A, GLYCEROL
Authors:Tretter, E.M, Schoeffler, A.J, Weisfield, S.R, Berger, J.M, TB Structural Genomics Consortium (TBSGC)
Deposit date:2009-08-07
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis.
Proteins, 78, 2010

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數據於2024-08-28公開中

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