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PDB: 5659 results

7JJF
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BU of 7jjf by Molmil
Sarcin-ricin loop with modified residue.
Descriptor: MAGNESIUM ION, RNA/DNA (27-mer)
Authors:Harp, J.M, Pallan, P.S, Egli, M.
Deposit date:2020-07-25
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Incorporating a Thiophosphate Modification into a Common RNA Tetraloop Motif Causes an Unanticipated Stability Boost.
Biochemistry, 59, 2020
7JK4
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BU of 7jk4 by Molmil
Structure of Drosophila ORC bound to AT-rich DNA and Cdc6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (34-MER), ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JGS
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BU of 7jgs by Molmil
Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 2)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-19
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
1DE3
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BU of 1de3 by Molmil
SOLUTION STRUCTURE OF THE CYTOTOXIC RIBONUCLEASE ALPHA-SARCIN
Descriptor: RIBONUCLEASE ALPHA-SARCIN
Authors:Perez-Canadillas, J.M, Campos-Olivas, R, Santoro, J, Lacadena, J, Martinez del Pozo, A, Gavilanes, J.G, Rico, M, Bruix, M.
Deposit date:1999-11-12
Release date:2000-06-21
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The highly refined solution structure of the cytotoxic ribonuclease alpha-sarcin reveals the structural requirements for substrate recognition and ribonucleolytic activity.
J.Mol.Biol., 299, 2000
1DIR
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BU of 1dir by Molmil
CRYSTAL STRUCTURE OF A MONOCLINIC FORM OF DIHYDROPTERIDINE REDUCTASE FROM RAT LIVER
Descriptor: DIHYDROPTERIDINE REDUCTASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Varughese, K.I, Su, Y, Skinner, M.M, Matthews, D.A, Whitely, J.M, Xuong, N.H.
Deposit date:1994-04-18
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a monoclinic form of dihydropteridine reductase from rat liver.
Acta Crystallogr.,Sect.D, 50, 1994
1GGI
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BU of 1ggi by Molmil
CRYSTAL STRUCTURE OF AN HIV-1 NEUTRALIZING ANTIBODY 50.1 IN COMPLEX WITH ITS V3 LOOP PEPTIDE ANTIGEN
Descriptor: HIV-1 V3 LOOP PEPTIDE ANTIGEN, IGG2A 50.1 FAB (HEAVY CHAIN), IGG2A 50.1 FAB (LIGHT CHAIN)
Authors:Stanfield, R.L, Rini, J.M, Wilson, I.A.
Deposit date:1993-04-02
Release date:1993-10-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a human immunodeficiency virus type 1 neutralizing antibody, 50.1, in complex with its V3 loop peptide antigen.
Proc.Natl.Acad.Sci.USA, 90, 1993
4MJ3
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BU of 4mj3 by Molmil
Haloalkane dehalogenase DmrA from Mycobacterium rhodesiae JS60
Descriptor: CHLORIDE ION, Haloalkane dehalogenase, POTASSIUM ION
Authors:Fung, H, Gadd, M.S, Guss, J.M, Matthews, J.M.
Deposit date:2013-09-03
Release date:2015-02-25
Last modified:2015-08-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and biophysical characterisation of haloalkane dehalogenases DmrA and DmrB in Mycobacterium strain JS60 and their role in growth on haloalkanes.
Mol.Microbiol., 97, 2015
8FHL
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BU of 8fhl by Molmil
Structure of pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-D alpha chain, ...
Authors:Custodio, J.M.F, Baker, B.M.
Deposit date:2022-12-14
Release date:2023-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Structure of Pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd
To Be Published
8FHU
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BU of 8fhu by Molmil
Structure of Pyruvate dehydrogenase phosphatase regulatory subunit epitope presented by H2-Dd
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-D alpha chain, ...
Authors:Custodio, J.M.F, Baker, B.M.
Deposit date:2022-12-15
Release date:2023-06-28
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structure of Pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd
To Be Published
4PCY
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BU of 4pcy by Molmil
CRYSTAL STRUCTURE ANALYSES OF REDUCED (CUI) POPLAR PLASTOCYANIN AT SIX PH VALUES
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Guss, J.M, Freeman, H.C.
Deposit date:1986-09-02
Release date:1987-01-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure analyses of reduced (CuI) poplar plastocyanin at six pH values.
J.Mol.Biol., 192, 1986
1TVK
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BU of 1tvk by Molmil
The binding mode of epothilone A on a,b-tubulin by electron crystallography
Descriptor: EPOTHILONE A, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Nettles, J.H, Li, H, Cornett, B, Krahn, J.M, Snyder, J.P, Downing, K.H.
Deposit date:2004-06-29
Release date:2004-09-14
Last modified:2023-08-23
Method:ELECTRON CRYSTALLOGRAPHY (2.89 Å)
Cite:The binding mode of epothilone A on alpha,beta-tubulin by electron crystallography
Science, 305, 2004
1CBI
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BU of 1cbi by Molmil
APO-CELLULAR RETINOIC ACID BINDING PROTEIN I
Descriptor: CELLULAR RETINOIC ACID BINDING PROTEIN I
Authors:Thompson, J.R, Bratt, J.M, Banaszak, L.J.
Deposit date:1995-07-12
Release date:1995-11-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of cellular retinoic acid binding protein I shows increased access to the binding cavity due to formation of an intermolecular beta-sheet.
J.Mol.Biol., 252, 1995
1U68
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BU of 1u68 by Molmil
DHNA 7,8 DIHYDRONEOPTERIN COMPLEX
Descriptor: 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE, Dihydroneopterin aldolase
Authors:Sanders, W.J, Nienaber, V.L, Lerner, C.G, McCall, J.O, Merrick, S.M, Swanson, S.J, Harlan, J.E, Stoll, V.S, Stamper, G.F, Betz, S.F, Condroski, K.R, Meadows, R.P, Severin, J.M, Walter, K.A, Magdalinos, P, Jakob, C.G, Wagner, R, Beutel, B.A.
Deposit date:2004-07-29
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of potent inhibitors of dihydroneopterin aldolase using CrystaLEAD high-throughput X-ray crystallographic screening and structure-directed lead optimization.
J.MED.CHEM., 47, 2004
1UVM
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BU of 1uvm by Molmil
The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5NT RNA conformation A
Descriptor: 5'-R(*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
4MWI
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BU of 4mwi by Molmil
Crystal structure of the human MLKL pseudokinase domain
Descriptor: (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol, GLYCEROL, Mixed lineage kinase domain-like protein
Authors:Czabotar, P.E, Murphy, J.M.
Deposit date:2013-09-25
Release date:2013-12-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insights into the evolution of divergent nucleotide-binding mechanisms among pseudokinases revealed by crystal structures of human and mouse MLKL.
Biochem.J., 457, 2014
1UO4
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BU of 1uo4 by Molmil
Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles
Descriptor: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4, iodobenzene
Authors:Yadav, M.K, Redman, J.E, Alvarez-Gutierrez, J.M, Zhang, Y, Stout, C.D, Ghadiri, M.R.
Deposit date:2003-09-15
Release date:2004-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides
Biochemistry, 44, 2005
1UCI
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BU of 1uci by Molmil
Mutants of RNase Sa
Descriptor: Guanyl-specific ribonuclease Sa, SULFATE ION
Authors:Takano, K, Scholtz, J.M, Sacchettini, J.C, Pace, C.N.
Deposit date:2003-04-15
Release date:2003-09-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The contribution of polar group burial to protein stability is strongly context-dependent
J.Biol.Chem., 278, 2003
1UZI
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BU of 1uzi by Molmil
C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM, TETRAGONAL FORM
Descriptor: CYCLO-TETRAMETAVANADATE, GLYCEROL, MONO-ADP-RIBOSYLTRANSFERASE C3, ...
Authors:Evans, H.R, Holloway, D.E, Sutton, J.M, Ayriss, J, Shone, C.C, Acharya, K.R.
Deposit date:2004-03-12
Release date:2004-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:C3 Exoenzyme from Clostridium Botulinum: Structure of a Tetragonal Crystal Form and a Reassessment of Nad-Induced Flexure
Acta Crystallogr.,Sect.D, 60, 2004
1BRD
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BU of 1brd by Molmil
Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy
Descriptor: BACTERIORHODOPSIN PRECURSOR, RETINAL
Authors:Henderson, R, Baldwin, J.M, Ceska, T.A, Zemlin, F, Beckmann, E, Downing, K.H.
Deposit date:1990-05-23
Release date:1991-04-15
Last modified:2024-04-17
Method:ELECTRON CRYSTALLOGRAPHY (3.5 Å)
Cite:Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.
J.Mol.Biol., 213, 1990
1WO3
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BU of 1wo3 by Molmil
Solution structure of Minimal Mutant 1 (MM1): Multiple alanine mutant of non-native CHANCE domain
Descriptor: CREB Binding Protein, ZINC ION
Authors:Sharpe, B.K, Liew, C.K, Wilce, J.A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2004-08-12
Release date:2005-03-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Assessment of the robustness of a serendipitous zinc binding fold: mutagenesis and protein grafting
Structure, 13, 2005
2YOI
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BU of 2yoi by Molmil
Crystal Structure of Ancestral Thioredoxin Relative to Last Eukaryotes Common Ancestor (LECA) from the Precambrian Period
Descriptor: ACETATE ION, CHLORIDE ION, LECA THIOREDOXIN, ...
Authors:Gavira, J.A, Ingles-Prieto, A, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2012-10-24
Release date:2013-08-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Conservation of protein structure over four billion years.
Structure, 21, 2013
2YPM
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BU of 2ypm by Molmil
Crystal Structure of Ancestral Thioredoxin Relative to Last Animal and Fungi Common Ancestor (LAFCA) from the Precambrian Period
Descriptor: LAFCA THIOREDOXIN
Authors:Gavira, J.A, Ingles-Prieto, A, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2012-10-30
Release date:2013-08-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Conservation of Protein Structure Over Four Billion Years
Structure, 21, 2013
1TYF
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BU of 1tyf by Molmil
THE STRUCTURE OF CLPP AT 2.3 ANGSTROM RESOLUTION SUGGESTS A MODEL FOR ATP-DEPENDENT PROTEOLYSIS
Descriptor: CLP PEPTIDASE
Authors:Wang, J, Hartling, J.A, Flanagan, J.M.
Deposit date:1997-10-13
Release date:1998-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis.
Cell(Cambridge,Mass.), 91, 1997
1WO6
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BU of 1wo6 by Molmil
Solution structure of Designed Functional Finger 5 (DFF5): Designed mutant based on non-native CHANCE domain
Descriptor: CREB Binding Protein, ZINC ION
Authors:Sharpe, B.K, Liew, C.K, Wilce, J.A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2004-08-12
Release date:2005-03-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Assessment of the robustness of a serendipitous zinc binding fold: mutagenesis and protein grafting
Structure, 13, 2005
1WPD
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BU of 1wpd by Molmil
Evidence for domain-specific recognition of SK and Kv channels by MTX and HsTx1 scorpion toxins
Descriptor: Potassium channel toxin alpha-KTx 6.2,Potassium channel toxin alpha-KTx 6.3
Authors:Regaya, I, Beeton, C, Ferrat, G, Andreotti, N, Chandy, G.K, Darbon, H, De Waard, M, Sabatier, J.M.
Deposit date:2004-09-01
Release date:2004-10-19
Last modified:2019-12-18
Method:SOLUTION NMR
Cite:Evidence for domain-specific recognition of SK and Kv channels by MTX and HsTx1 scorpion toxins
J.Biol.Chem., 279, 2004

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数据于2024-10-02公开中

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