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PDB: 5628 results

3CT2
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Crystal structure of muconate cycloisomerase from Pseudomonas fluorescens
Descriptor: MAGNESIUM ION, Muconate cycloisomerase
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-04-11
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes.
Biochemistry, 48, 2009
1O29
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Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and FdUMP at 2.0 A resolution
Descriptor: 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG)
Deposit date:2003-02-18
Release date:2003-06-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein
Structure, 11, 2003
4AOT
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Crystal Structure of Human Serine Threonine Kinase-10 (LOK) Bound to GW830263A
Descriptor: 1-(4-{methyl[2-({4-[(methylsulfonyl)methyl]phenyl}amino)pyrimidin-4-yl]amino}phenyl)-3-{3-[(4-methylpiperazin-1-yl)carbonyl]phenyl}urea, CHLORIDE ION, Serine/threonine-protein kinase 10
Authors:Elkins, J.M, Salah, E, Szklarz, M, Canning, P, von Delft, F, Yue, W, Liu, Y, Bountra, C, Arrowsmith, C, Edwards, A, Knapp, S.
Deposit date:2012-03-29
Release date:2012-04-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal Structure of Human Serine Threonine Kinase-10 (Lok) Bound to Gw830263A
To be Published
1L6B
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CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG
Descriptor: 5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3', CALCIUM ION
Authors:Vargason, J.M, Ho, P.S.
Deposit date:2002-03-08
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution.
J.Biol.Chem., 277, 2002
4AN2
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Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.
Descriptor: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Rice, K.D, Aay, N, Anand, N.K, Blazey, C.M, Bowles, O.J, Bussenius, J, Costanzo, S, Curtis, J.K, Defina, S.C, Dubenko, L, Engst, S, Joshi, A.A, Kennedy, A.R, Kim, A.I, Koltun, E.S, Lougheed, J.C, Manalo, J.C.L, Martini, J.F, Nuss, J.M, Peto, C.J, Tsang, T.H, Yu, P, Johnston, S.
Deposit date:2012-03-14
Release date:2012-12-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Novel Carboxamide-Based Allosteric Mek Inhibitors: Discovery and Optimization Efforts Toward Xl518 (Gdc-0973)
Acs Med.Chem.Lett., 3, 2012
3QNM
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Haloalkane Dehalogenase Family Member from Bacteroides thetaiotaomicron of Unknown Function
Descriptor: CHLORIDE ION, Haloacid dehalogenase-like hydrolase, MAGNESIUM ION
Authors:Matthew, M.W, Ramagopal, U.A, Toro, R, Dickey, M, Sauder, J.M, Poulter, C.D, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2011-02-08
Release date:2011-03-30
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Haloalkane Dehalogenase Family Member from Bacteroides thetaiotaomicron of Unknown Function
To be Published
1L7R
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Tyr44Phe Mutant of Bacterial Cocaine Esterase cocE
Descriptor: cocaine esterase
Authors:Turner, J.M, Larsen, N.A, Basran, A, Barbas III, C.F, Bruce, N.C, Wilson, I.A, Lerner, R.A.
Deposit date:2002-03-16
Release date:2003-02-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Biochemical characterization and structural analysis of a highly proficient cocaine esterase.
Biochemistry, 41, 2002
4ANB
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Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.
Descriptor: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Rice, K.D, Aay, N, Anand, N.K, Blazey, C.M, Bowles, O.J, Bussenius, J, Costanzo, S, Curtis, J.K, Defina, S.C, Dubenko, L, Engst, S, Joshi, A.A, Kennedy, A.R, Kim, A.I, Koltun, E.S, Lougheed, J.C, Manalo, J.C.L, Martini, J.F, Nuss, J.M, Peto, C.J, Tsang, T.H, Yu, P, Johnston, S.
Deposit date:2012-03-16
Release date:2012-12-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel Carboxamide-Based Allosteric Mek Inhibitors: Discovery and Optimization Efforts Toward Xl518 (Gdc-0973)
Acs Med.Chem.Lett., 3, 2012
3F5Q
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CRYSTAL STRUCTURE OF putative short chain dehydrogenase from Escherichia coli CFT073
Descriptor: dehydrogenase
Authors:Malashkevich, V.N, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-04
Release date:2009-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of an uncharacterized protein
to be published
3KEP
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Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae
Descriptor: 1,2-ETHANEDIOL, Nucleoporin NUP145
Authors:Sampathkumar, P, Ozyurt, S.A, Do, J, Bain, K, Dickey, M, Gheyi, T, Sali, A, Kim, S.J, Phillips, J, Pieper, U, Fernandez-Martinez, J, Franke, J.D, Atwell, S, Thompson, D.A, Emtage, J.S, Wasserman, S, Rout, M, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-26
Release date:2009-12-22
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.
Proteins, 78, 2010
3QVG
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XRCC1 bound to DNA ligase
Descriptor: DNA ligase 3, DNA repair protein XRCC1
Authors:Cuneo, M.J, Krahn, J.M, London, R.E.
Deposit date:2011-02-25
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes.
Nucleic Acids Res., 39, 2011
3KRT
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CRYSTAL STRUCTURE OF putative crotonyl CoA reductase from Streptomyces coelicolor A3(2)
Descriptor: CHLORIDE ION, Crotonyl CoA reductase
Authors:Malashkevich, V.N, Patskovsky, Y, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-11-19
Release date:2009-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:CRYSTAL STRUCTURE OF putative crotonyl CoA reductase from Streptomyces coelicolor A3(2)
To be Published
4AN9
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BU of 4an9 by Molmil
Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.
Descriptor: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Rice, K.D, Aay, N, Anand, N.K, Blazey, C.M, Bowles, O.J, Bussenius, J, Costanzo, S, Curtis, J.K, Defina, S.C, Dubenko, L, Engst, S, Joshi, A.A, Kennedy, A.R, Kim, A.I, Koltun, E.S, Lougheed, J.C, Manalo, J.C.L, Martini, J.F, Nuss, J.M, Peto, C.J, Tsang, T.H, Yu, P, Johnston, S.
Deposit date:2012-03-16
Release date:2012-12-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Novel Carboxamide-Based Allosteric Mek Inhibitors: Discovery and Optimization Efforts Toward Xl518 (Gdc-0973)
Acs Med.Chem.Lett., 3, 2012
4A8K
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BU of 4a8k by Molmil
Non-Catalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial dsRNA virus phi6 from De Novo Initiation to Elongation
Descriptor: 5'-D(*AP*AP*TP*CP)-3', 5'-D(*TP*CP)-3', GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wright, S, Poranen, M.M, Bamford, D.H, Stuart, D.I, Grimes, J.M.
Deposit date:2011-11-21
Release date:2012-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Noncatalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial Double-Stranded RNA Virus Phi6 from De Novo Initiation to Elongation.
J.Virol., 86, 2012
3KSU
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Crystal structure of short-chain dehydrogenase from oenococcus oeni psu-1
Descriptor: 3-oxoacyl-acyl carrier protein reductase
Authors:Patskovsky, Y, Toro, R, Gilmore, M, Miller, S, Sauder, J.M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-11-23
Release date:2009-12-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Short-Chain Dehydrogenase from Oenococcus Oeni Psu-1
To be Published
3FBC
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Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase, PHOSPHATE ION, ...
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-11-19
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
1Q01
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Lebetin peptides, a new class of potent aggregation inhibitors
Descriptor: lebetin 2 isoform alpha
Authors:Mosbah, A, Marrakchi, N, Ganzalez, M.J, Van Rietschoten, J, Giralt, E, El Ayeb, M, Rochat, H, Sabatier, J.M, Darbon, H, Mabrouk, K.
Deposit date:2003-07-15
Release date:2005-05-03
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Lebetin peptides, a new class of potent aggregation inhibitors
To be Published
3FC9
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Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP
Descriptor: CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-11-21
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3KUD
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Complex of Ras-GDP with RafRBD(A85K)
Descriptor: GTPase HRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Filchtinski, D, Sharabi, O, Rueppel, A, Vetter, I.R, Herrmann, C, Shifman, J.M.
Deposit date:2009-11-27
Release date:2010-03-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.
J.Mol.Biol., 399, 2010
4ZMP
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BU of 4zmp by Molmil
Crystal structure of human P-cadherin (ss-dimer Q101L)
Descriptor: CALCIUM ION, Cadherin-3
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2015-05-04
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism
Structure, 24, 2016
2HDH
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BIOCHEMICAL CHARACTERIZATION AND STRUCTURE DETERMINATION OF HUMAN HEART SHORT CHAIN L-3-HYDROXYACYL COA DEHYDROGENASE PROVIDE INSIGHT INTO CATALYTIC MECHANISM
Descriptor: L-3-HYDROXYACYL COA DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Barycki, J.J, Bratt, J.M, Banaszak, L.J.
Deposit date:1998-12-04
Release date:1999-05-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biochemical characterization and crystal structure determination of human heart short chain L-3-hydroxyacyl-CoA dehydrogenase provide insights into catalytic mechanism.
Biochemistry, 38, 1999
4ZMZ
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Crystal structure of human P-cadherin (monomer 2)
Descriptor: CALCIUM ION, Cadherin-3
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2015-05-04
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism
Structure, 24, 2016
1LIC
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BU of 1lic by Molmil
X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.
Descriptor: 1-HEXADECANOSULFONIC ACID, ADIPOCYTE LIPID-BINDING PROTEIN, PROPANOIC ACID
Authors:Lalonde, J.M, Bernlohr, D.A, Banaszak, L.J.
Deposit date:1993-12-21
Release date:1994-04-30
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystallographic structures of adipocyte lipid-binding protein complexed with palmitate and hexadecanesulfonic acid. Properties of cavity binding sites.
Biochemistry, 33, 1994
3CF2
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Structure of P97/vcp in complex with ADP/AMP-PNP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Transitional endoplasmic reticulum ATPase
Authors:Davies, J.M, Delabarre, B, Brunger, A.T, Weis, W.I.
Deposit date:2008-03-01
Release date:2008-04-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Improved structures of full-length p97, an AAA ATPase: implications for mechanisms of nucleotide-dependent conformational change.
Structure, 16, 2008
1LIQ
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Non-native Solution Structure of a fragment of the CH1 domain of CBP
Descriptor: CREB Binding Protein, ZINC ION
Authors:Sharpe, B.K, Matthews, J.M, Kwan, A.H.Y, Newton, A, Gell, D.A, Crossley, M, Mackay, J.P.
Deposit date:2002-04-18
Release date:2002-05-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A New Zinc Binding Fold Underlines the Versatility of Zinc Binding Modules in Protein Evolution
Structure, 10, 2002

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