Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2129 results

2M0X
DownloadVisualize
BU of 2m0x by Molmil
Solution structure of U14Ub1, an engineered ubiquitin variant with increased affinity for USP14
Descriptor: engineered ubiquitin variant
Authors:Phillips, A.H, Fairbrother, W.J, Corn, J.E.
Deposit date:2012-11-08
Release date:2013-06-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
2XND
DownloadVisualize
BU of 2xnd by Molmil
Crystal structure of bovine F1-c8 sub-complex of ATP Synthase
Descriptor: ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL, ATP SYNTHASE SUBUNIT ALPHA, ...
Authors:Watt, I.N, Montgomery, M.G, Runswick, M.J, Leslie, A.G.W, Walker, J.E.
Deposit date:2010-08-02
Release date:2010-09-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Bioenergetic Cost of Making an Adenosine Triphosphate Molecule in Animal Mitochondria.
Proc.Natl.Acad.Sci.USA, 107, 2010
1IKP
DownloadVisualize
BU of 1ikp by Molmil
Pseudomonas Aeruginosa Exotoxin A, P201Q, W281A mutant
Descriptor: CHLORIDE ION, EXOTOXIN A, SODIUM ION
Authors:McKay, D.B, Wedekind, J.E, Trame, C.B.
Deposit date:2001-05-04
Release date:2001-12-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Refined Crystallographic Structure of Pseudomonas aeruginosa Exotoxin A and its Implications for the Molecular Mechanism of Toxicity
J.Mol.Biol., 314, 2001
7RYE
DownloadVisualize
BU of 7rye by Molmil
Cryo-EM structure of the needle filament-tip complex of the Salmonella type III secretion injectisome
Descriptor: Cell invasion protein SipD, Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2021-08-25
Release date:2021-11-10
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of the needle filament tip complex of the Salmonella type III secretion injectisome.
Proc.Natl.Acad.Sci.USA, 118, 2021
1A5J
DownloadVisualize
BU of 1a5j by Molmil
CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
Descriptor: B-MYB
Authors:Mcintosh, P.B, Carr, M.D, Wollborn, U, Frenkiel, T.A, Feeney, J, Mccormick, J.E, Klempnauer, K.H.
Deposit date:1998-02-16
Release date:1998-07-01
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the B-Myb DNA-binding domain: a possible role for conformational instability of the protein in DNA binding and control of gene expression.
Biochemistry, 37, 1998
1ANJ
DownloadVisualize
BU of 1anj by Molmil
ALKALINE PHOSPHATASE (K328H)
Descriptor: ALKALINE PHOSPHATASE, PHOSPHATE ION, ZINC ION
Authors:Murphy, J.E, Tibbitts, T.T, Kantrowitz, E.R.
Deposit date:1995-09-06
Release date:1996-01-29
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mutations at positions 153 and 328 in Escherichia coli alkaline phosphatase provide insight towards the structure and function of mammalian and yeast alkaline phosphatases.
J.Mol.Biol., 253, 1995
4ASU
DownloadVisualize
BU of 4asu by Molmil
F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL, ...
Authors:Rees, D.M, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2012-05-03
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Evidence of a New Catalytic Intermediate in the Pathway of ATP Hydrolysis by F1-ATPase from Bovine Heart Mitochondria.
Proc.Natl.Acad.Sci.USA, 109, 2012
5N53
DownloadVisualize
BU of 5n53 by Molmil
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with N-(3-chloro-4-methoxyphenyl) acetamide
Descriptor: D-3-phosphoglycerate dehydrogenase, ~{N}-(3-chloranyl-4-methoxy-phenyl)ethanamide
Authors:Unterlass, J.E, Basle, A, Blackburn, T.J, Tucker, J, Cano, C, Noble, M.E.M, Curtin, N.J.
Deposit date:2017-02-12
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Validating and enabling phosphoglycerate dehydrogenase (PHGDH) as a target for fragment-based drug discovery in PHGDH-amplified breast cancer.
Oncotarget, 9, 2018
7S57
DownloadVisualize
BU of 7s57 by Molmil
Structure of Sortase A from Streptococcus pyogenes with the b7-b8 loop sequence of Enterococcus faecalis Sortase A
Descriptor: Class A sortase, sortase A chimera
Authors:Svendsen, J.E, Johnson, D.A, Gao, M, Antos, J.M, Amacher, J.F.
Deposit date:2021-09-09
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and biochemical analyses of selectivity determinants in chimeric Streptococcus Class A sortase enzymes.
Protein Sci., 31, 2022
1IKQ
DownloadVisualize
BU of 1ikq by Molmil
Pseudomonas Aeruginosa Exotoxin A, wild type
Descriptor: CHLORIDE ION, EXOTOXIN A, SODIUM ION
Authors:McKay, D.B, Wedekind, J.E, Trame, C.B.
Deposit date:2001-05-04
Release date:2001-12-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Refined Crystallographic Structure of Pseudomonas aeruginosa Exotoxin A and its Implications for the Molecular Mechanism of Toxicity
J.Mol.Biol., 314, 2001
4AZ1
DownloadVisualize
BU of 4az1 by Molmil
Crystal structure of the Trypanosoma cruzi protein tyrosine phosphatase TcPTP1, a potential therapeutic target for Chagas' disease
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, TYROSINE SPECIFIC PROTEIN PHOSPHATASE
Authors:Lountos, G.T, Tropea, J.E, Waugh, D.S.
Deposit date:2012-06-22
Release date:2012-11-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.181 Å)
Cite:Structure of the Trypanosoma Cruzi Protein Tyrosine Phosphatase Tcptp1, a Potential Therapeutic Target for Chagas' Disease.
Mol.Biochem.Parasitol., 187, 2012
7S94
DownloadVisualize
BU of 7s94 by Molmil
Structure of the core postfusion porcine endogenous retrovirus fusion protein
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Endogenous retrovirus group S71 member 1 Env polyprotein
Authors:Dean, T.T, Lee, J.E.
Deposit date:2021-09-20
Release date:2022-01-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein.
Mbio, 13, 2022
7S53
DownloadVisualize
BU of 7s53 by Molmil
Structure of Sortase A from Streptococcus pyogenes with the b7-b8 loop sequence from Listeria monocytogenes Sortase A
Descriptor: Class A sortase, sortase A chimera
Authors:Johnson, D.A, Svendsen, J.E, Antos, J.M, Amacher, J.F.
Deposit date:2021-09-09
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and biochemical analyses of selectivity determinants in chimeric Streptococcus Class A sortase enzymes.
Protein Sci., 31, 2022
8EVK
DownloadVisualize
BU of 8evk by Molmil
Crystal structure of Helicobacter pylori dihydroneopterin aldolase (DHNA)
Descriptor: 1,2-ETHANEDIOL, Dihydroneopterin aldolase, PTERINE
Authors:Shaw, G.X, Cherry, S, Tropea, J.E, Ji, X.
Deposit date:2022-10-20
Release date:2023-03-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Helicobacter pylori dihydroneopterin aldolase suggests a fragment-based strategy for isozyme-specific inhibitor design.
Curr Res Struct Biol, 5, 2023
3I2R
DownloadVisualize
BU of 3i2r by Molmil
Crystal structure of the hairpin ribozyme with a 2',5'-linked substrate with N1-deazaadenosine at position A9
Descriptor: 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3', 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3', COBALT HEXAMMINE(III), ...
Authors:Wedekind, J.E, Spitale, R.C, Krucinska, J.
Deposit date:2009-06-29
Release date:2009-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Single-atom imino substitutions at A9 and A10 reveal distinct effects on the fold and function of the hairpin ribozyme catalytic core.
Biochemistry, 48, 2009
5KC8
DownloadVisualize
BU of 5kc8 by Molmil
Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-2 (GluD2)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glutamate receptor ionotropic, ...
Authors:Elegheert, J, Clay, J.E, Siebold, C, Aricescu, A.R.
Deposit date:2016-06-05
Release date:2016-07-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Structural basis for integration of GluD receptors within synaptic organizer complexes.
Science, 353, 2016
2X8R
DownloadVisualize
BU of 2x8r by Molmil
The structure of a family GH25 lysozyme from Aspergillus fumigatus
Descriptor: CHLORIDE ION, GLYCOSYL HYDROLASE
Authors:Korczynska, J.E, Danielsen, S, Schagerlof, U, Turkenburg, J.P, Davies, G.J, Wilson, K.S, Taylor, E.J.
Deposit date:2010-03-11
Release date:2010-09-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structure of a Family Gh25 Lysozyme from Aspergillus Fumigatus
Acta Crystallogr.,Sect.F, 66, 2010
1J5N
DownloadVisualize
BU of 1j5n by Molmil
Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA
Descriptor: 5'-D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G)-3', Nonhistone chromosomal protein 6A
Authors:Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J.
Deposit date:2002-05-15
Release date:2002-10-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
J.Mol.Biol., 323, 2002
5KAF
DownloadVisualize
BU of 5kaf by Molmil
RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Young, I.D, Ibrahim, M, Chatterjee, R, Gul, S, Koroidov, S, Brewster, A.S, Tran, R, Alonso-Mori, R, Fuller, F, Kroll, T, Michels-Clark, T, Laksmono, H, Sierra, R.G, Stan, C.A, Saracini, C, Bean, M.A, Seuffert, I, Sokaras, D, Weng, T.-C, Hunter, M.S, Aquila, A, Koglin, J.E, Robinson, J, Liang, M, Boutet, S, Lyubimov, A.Y, Uervirojnangkoorn, M, Moriarty, N.W, Liebschner, D, Afonine, P.V, Waterman, D.G, Evans, G, Dobbek, H, Weis, W.I, Brunger, A.T, Zwart, P.H, Adams, P.D, Zouni, A, Messinger, J, Bergmann, U, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J.
Deposit date:2016-06-01
Release date:2016-11-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.00001 Å)
Cite:Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
4ACZ
DownloadVisualize
BU of 4acz by Molmil
Structure of the GH99 endo-alpha-mannosidase from Bacteroides thetaiotaomicron
Descriptor: ENDO-ALPHA-MANNOSIDASE, GLYCEROL
Authors:Thompson, A.J, Williams, R.J, Hakki, Z, Alonzi, D.S, Wennekes, T, Gloster, T.M, Songsrirote, K, Thomas-Oates, J.E, Wrodnigg, T.M, Spreitz, J, Stuetz, A.E, Butters, T.D, Williams, S.J, Davies, G.J.
Deposit date:2011-12-21
Release date:2012-02-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and Mechanistic Insight Into N-Glycan Processing by Endo-Alpha-Mannosidase.
Proc.Natl.Acad.Sci.USA, 109, 2012
1J9A
DownloadVisualize
BU of 1j9a by Molmil
OLIGORIBONUCLEASE
Descriptor: OLIGORIBONUCLEASE, SULFATE ION
Authors:Bonander, N, Tordova, M, Ladner, J.E, Eisenstein, E, Gilliland, G.L, Structure 2 Function Project (S2F)
Deposit date:2001-05-24
Release date:2003-06-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of Haemophilus Influenzae HI1715, an Oligoribonuclease
To be Published
7SFW
DownloadVisualize
BU of 7sfw by Molmil
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Capsid protein, Spike glycoprotein E1, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2021-10-04
Release date:2022-03-16
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge.
J.Exp.Med., 219, 2022
7SFU
DownloadVisualize
BU of 7sfu by Molmil
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Capsid protein, Spike glycoprotein E1, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2021-10-04
Release date:2022-03-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge.
J.Exp.Med., 219, 2022
7SFV
DownloadVisualize
BU of 7sfv by Molmil
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Capsid protein, Spike glycoprotein E1, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2021-10-04
Release date:2022-03-16
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge.
J.Exp.Med., 219, 2022
7NJW
DownloadVisualize
BU of 7njw by Molmil
Mycobacterium smegmatis ATP synthase Fo combined class 3
Descriptor: ATP synthase subunit a, ATP synthase subunit b, ATP synthase subunit b-delta, ...
Authors:Montgomery, M.G, Petri, J, Spikes, T.E, Walker, J.E.
Deposit date:2021-02-17
Release date:2021-10-27
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Structure of the ATP synthase from Mycobacterium smegmatis provides targets for treating tuberculosis.
Proc.Natl.Acad.Sci.USA, 118, 2021

226707

건을2024-10-30부터공개중

PDB statisticsPDBj update infoContact PDBjnumon