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PDB: 42507 results

5J4E
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BU of 5j4e by Molmil
Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (Photoexcited state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2016-04-01
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Signaling States of a Short Blue-Light Photoreceptor Protein PpSB1-LOV Revealed from Crystal Structures and Solution NMR Spectroscopy.
J.Mol.Biol., 428, 2016
7ZYL
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BU of 7zyl by Molmil
Avidin + Biotin-Tempo
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(2,2,6,6-tetramethyl-1-oxidanyl-piperidin-4-yl)hexanamide, Avidin
Authors:Milani, J, Myasnikov, A, Beckert, B, Nazarov, S, Ansermet, J.P, Saenz, F.
Deposit date:2022-05-25
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:Avidin + Biotin-Tempo
To Be Published
5JFU
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BU of 5jfu by Molmil
HIV-1 wild Type protease with GRL-007-14A (a Adamantane P1-Ligand with bis-THF in P2 and benzylamine in P1')
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-{benzyl[(4-methoxyphenyl)sulfonyl]amino}-3-hydroxy-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]butan-2-yl}carbamate, CHLORIDE ION, Protease
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2016-04-19
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Probing Lipophilic Adamantyl Group as the P1-Ligand for HIV-1 Protease Inhibitors: Design, Synthesis, Protein X-ray Structural Studies, and Biological Evaluation.
J.Med.Chem., 59, 2016
5CKN
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BU of 5ckn by Molmil
The CUB1-EGF-CUB2 domains of rat MBL-associated serine protease-2 (MASP-2) bound to Ca2+
Descriptor: CALCIUM ION, Mannan-binding lectin serine peptidase 2
Authors:Nan, R, Furze, C.M, Wright, D.W, Gor, J, Wallis, R, Perkins, S.J.
Deposit date:2015-07-15
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Flexibility in Mannan-Binding Lectin-Associated Serine Proteases-1 and -2 Provides Insight on Lectin Pathway Activation.
Structure, 25, 2017
8A36
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BU of 8a36 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
To Be Published
8A5R
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BU of 8a5r by Molmil
Crystal structure of light-activated DNA-binding protein EL222 from Erythrobacter litoralis crystallized and measured in dark.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Koval, T, Chaudhari, A, Fuertes, G, Andersson, I, Dohnalek, J.
Deposit date:2022-06-15
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:EL222 from Erythrobacter litoralis.
To Be Published
2YG2
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BU of 2yg2 by Molmil
Structure of apolioprotein M in complex with Sphingosine 1-Phosphate
Descriptor: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, APOLIPOPROTEIN M, CITRATE ANION
Authors:Christoffersen, C, Obinata, H, Gowda, S, Galvani, S, Ahnstrom, J, Sevvana, M, Egerer-Sieber, C, Muller, Y.A, Hla, T, Nielsen, L, Dahlback, B.
Deposit date:2011-04-11
Release date:2011-06-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Endothelium-Protective Sphingosine-1-Phosphate Provided by Hdl-Associated Apolipoprotein M.
Proc.Natl.Acad.Sci.USA, 108, 2011
3J3W
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BU of 3j3w by Molmil
Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)
Descriptor: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Li, N, Guo, Q, Zhang, Y, Yuan, Y, Ma, C, Lei, J, Gao, N.
Deposit date:2013-04-28
Release date:2013-06-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (10.7 Å)
Cite:Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit
Nucleic Acids Res., 41, 2013
2YBQ
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BU of 2ybq by Molmil
The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH and uroporphyrinogen III
Descriptor: METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, UROPORPHYRINOGEN III
Authors:Storbeck, S, Saha, S, Krausze, J, Klink, B.U, Heinz, D.W, Layer, G.
Deposit date:2011-03-09
Release date:2011-06-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Heme D1 Biosynthesis Enzyme Nire in Complex with its Substrate Reveals New Insights Into the Catalytic Mechanism of S-Adenosyl-L-Methionine-Dependent Uroporphyrinogen III Methyltransferases.
J.Biol.Chem., 286, 2011
5J5J
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BU of 5j5j by Molmil
Crystal structure of a chimera of human Desmocollin-2 EC1 and human Desmoglein-2 EC2-EC5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Brasch, J, Harrison, O.J, Shapiro, L.
Deposit date:2016-04-02
Release date:2016-06-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural basis of adhesive binding by desmocollins and desmogleins.
Proc.Natl.Acad.Sci.USA, 113, 2016
3J7X
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BU of 3j7x by Molmil
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Descriptor: Major capsid protein 10A
Authors:Guo, F, Liu, Z, Fang, P.A, Zhang, Q, Wright, E.T, Wu, W, Zhang, C, Vago, F, Ren, Y, Jakata, J, Chiu, W, Serwer, P, Jiang, W.
Deposit date:2014-08-12
Release date:2014-10-15
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
8JKE
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BU of 8jke by Molmil
AfsR(T337A) transcription activation complex
Descriptor: DNA(65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Wang, Y, Zheng, J.
Deposit date:2023-06-01
Release date:2024-02-14
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces.
Plos Biol., 22, 2024
7L5M
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BU of 7l5m by Molmil
Crystal Structure of the DiB-RM-split Protein
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lipocalin family protein, SODIUM ION, ...
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
5CNN
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BU of 5cnn by Molmil
Crystal structure of the EGFR kinase domain mutant I682Q
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kovacs, E, Das, R, Mirza, A, Jura, N, Barros, T, Kuriyan, J.
Deposit date:2015-07-17
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Analysis of the Role of the C-Terminal Tail in the Regulation of the Epidermal Growth Factor Receptor.
Mol.Cell.Biol., 35, 2015
7L5L
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BU of 7l5l by Molmil
Crystal structure of the DiB-RM protein
Descriptor: Lipocalin family protein, SULFATE ION
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
8JMA
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BU of 8jma by Molmil
The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster in complex with fructose
Descriptor: Gustatory receptor for sugar taste 43a, beta-D-fructofuranose
Authors:Ma, D, Guo, J.
Deposit date:2023-06-04
Release date:2024-02-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
5OOI
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BU of 5ooi by Molmil
STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA') IN COMPLEX WITH THE INDENOINDOLE-TYPE INHIBITOR 4P
Descriptor: 1,2-ETHANEDIOL, 4-(3-methylbut-2-enoxy)-5-propan-2-yl-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione, ACETATE ION, ...
Authors:Hochscherf, J, Lindenblatt, D, Witulski, B, Birus, R, Aichele, D, Marminon, C, Bouaziz, Z, Le Borgne, M, Jose, J, Niefind, K.
Deposit date:2017-08-07
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Unexpected Binding Mode of a Potent Indeno[1,2-b]indole-Type Inhibitor of Protein Kinase CK2 Revealed by Complex Structures with the Catalytic Subunit CK2 alpha and Its Paralog CK2 alpha '.
Pharmaceuticals (Basel), 10, 2017
8JME
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BU of 8jme by Molmil
The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster
Descriptor: Gustatory receptor for sugar taste 64a
Authors:Ma, D, Guo, J.
Deposit date:2023-06-04
Release date:2024-02-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
8JMH
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BU of 8jmh by Molmil
The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with sucrose
Descriptor: Gustatory receptor for sugar taste 64a, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Ma, D, Guo, J.
Deposit date:2023-06-04
Release date:2024-02-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
8A5S
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BU of 8a5s by Molmil
Crystal structure of light-activated DNA-binding protein EL222 from Erythrobacter litoralis crystallized in dark, measured illuminated.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Koval, T, Chaudhari, A, Fuertes, G, Andersson, I, Dohnalek, J.
Deposit date:2022-06-15
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:EL222 from Erythrobacter litoralis.
To Be Published
8J1I
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BU of 8j1i by Molmil
Crystal Structure of EphA8/SASH1 Complex
Descriptor: Ephrin type-A receptor 8, SAM and SH3 domain-containing protein 1
Authors:Liu, W, Li, J, Ding, Y.
Deposit date:2023-04-12
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of EphA8 and SASH1 complex at 1.60 Angstroms resolution
To Be Published
7L5K
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BU of 7l5k by Molmil
Crystal structure of the DiB-RM protein
Descriptor: DODECYL-BETA-D-MALTOSIDE, ISOPROPYL ALCOHOL, Lipocalin family protein, ...
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
2YMB
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BU of 2ymb by Molmil
Structures of MITD1
Descriptor: CHARGED MULTIVESICULAR BODY PROTEIN 1A, MIT DOMAIN-CONTAINING PROTEIN 1
Authors:Hadders, M.A, Agromayor, M, Obita, T, Perisic, O, Caballe, A, Kloc, M, Lamers, M.H, Williams, R.L, Martin-Serrano, J.
Deposit date:2012-10-08
Release date:2012-10-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Escrt-III Binding Protein Mitd1 is Involved in Cytokinesis and Has an Unanticipated Pld Fold that Binds Membranes.
Proc.Natl.Acad.Sci.USA, 109, 2012
8A33
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BU of 8a33 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (light state)
Descriptor: Flavin mononucleotide (semi-quinone intermediate), Sensory box protein
Authors:Batra-Safferling, R, Granzin, J, Krauss, U.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (light state)
To Be Published
4QRT
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BU of 4qrt by Molmil
Crystal Structure of HLA B*0801 in complex with ELN_YYM, ELNRKMIYM
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Gras, S, Twist, K.-A, Rossjohn, J.
Deposit date:2014-07-02
Release date:2014-07-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire.
Sci Rep, 4, 2014

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