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PDB: 42507 件

3BWG
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The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168
分子名称: 1,2-ETHANEDIOL, Uncharacterized HTH-type transcriptional regulator yydK
著者Tan, K, Zhou, M, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2008-01-09
公開日2008-01-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献The crystal structure of possible transcriptional regulator YydK from Bacillus subtilis subsp. subtilis str. 168.
To be Published
7ZJK
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CspZ (BbCRASP-2) from Borrelia burgdorferi strain B408
分子名称: CspZ
著者Brangulis, K, Marcinkiewicz, A, Hart, T.M, Dupuis, A.P, Zamba Campero, M, Nowak, T.A, Stout, J.L, Akopjana, I, Kazaks, A, Bogans, J, Ciota, A.T, Kraiczy, P, Kolokotronis, S.O, Lin, Y.-P.
登録日2022-04-11
公開日2023-04-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural evolution of an immune evasion determinant shapes pathogen host tropism.
Proc.Natl.Acad.Sci.USA, 120, 2023
5BP9
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Crystal structure of SAM-dependent methyltransferase from Bacteroides fragilis in complex with S-Adenosyl-L-homocysteine
分子名称: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Putative methyltransferase protein, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Gasiorowska, O.A, Shabalin, I.G, Handing, K.B, Cymborowski, M.T, Mason, D.V, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2015-05-27
公開日2015-06-10
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of SAM-dependent methyltransferase fromBacteroides fragilis in complex with S-Adenosyl-L-homocysteine
to be published
4OTX
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Structure of the anti-Francisella tularensis O-antigen antibody N203 Fab fragment
分子名称: AZIDE ION, CHLORIDE ION, N203 heavy chain, ...
著者Lu, Z, Rynkiewicz, M.J, Yang, C.-Y, Madico, G, Perkins, H.M, Roche, M.I, Seaton, B.A, Sharon, J.
登録日2014-02-14
公開日2014-09-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Functional and Structural Characterization of Francisella tularensis O-Antigen Antibodies at the Low End of Antigen Reactivity.
Monoclon Antib Immunodiagn Immunother, 33, 2014
4OVR
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CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM XANTHOBACTER AUTOTROPHICUS PY2, TARGET EFI-510329, WITH BOUND BETA-D-GALACTURONATE
分子名称: CHLORIDE ION, TRAP dicarboxylate transporter, DctP subunit, ...
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2013-12-12
公開日2014-01-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
8IBX
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Structure of R2 with 3'UTR and DNA in unwinding state
分子名称: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ...
著者Deng, P, Tan, S, Wang, J, Liu, J.J.
登録日2023-02-10
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.74 Å)
主引用文献Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
8I0C
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Crystal structure of Aldo-keto reductase 1C3 complexed with compound S0703
分子名称: 1-[4-[3,5-bis(chloranyl)phenyl]-3-fluoranyl-phenyl]cyclopropane-1-carboxylic acid, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Jiang, J, He, S, Liu, Y, Fang, P, Sun, H.
登録日2023-01-10
公開日2023-09-20
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Development of Biaryl-Containing Aldo-Keto Reductase 1C3 (AKR1C3) Inhibitors for Reversing AKR1C3-Mediated Drug Resistance in Cancer Treatment.
J.Med.Chem., 66, 2023
7LYX
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Crystal structure of human CYP8B1 in complex with (S)-tioconazole
分子名称: (S)-Tioconazole, 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase, GLYCEROL, ...
著者Liu, J, Scott, E.E.
登録日2021-03-08
公開日2022-08-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The structure and characterization of human cytochrome P450 8B1 supports future drug design for nonalcoholic fatty liver disease and diabetes.
J.Biol.Chem., 298, 2022
8IA3
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Crystal structure of human USF2 bHLHLZ domain in complex with DNA
分子名称: DNA (5'-D(*GP*CP*GP*CP*GP*TP*CP*AP*CP*GP*TP*GP*CP*CP*CP*GP*TP*C)-3'), DNA (5'-D(P*GP*AP*CP*GP*GP*GP*CP*AP*CP*GP*TP*GP*AP*CP*GP*CP*GP*C)-3'), Upstream stimulatory factor 2
著者Huang, C, Fang, P, Wang, J.
登録日2023-02-07
公開日2023-09-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Tetramerization of upstream stimulating factor USF2 requires the elongated bent leucine zipper of the bHLH-LZ domain.
J.Biol.Chem., 299, 2023
5LAF
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Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. First data set (0.31 MGy)
分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C
著者Castellvi, A, Juanhuix, J.
登録日2016-06-14
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Uridine as a new scavenger for synchrotron-based structural biology techniques.
J Synchrotron Radiat, 24, 2017
3BNR
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BU of 3bnr by Molmil
Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)
分子名称: A site of human mitochondrial ribosome, chain one, chain three, ...
著者Kondo, J, Westhof, E.
登録日2007-12-14
公開日2008-06-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates
Nucleic Acids Res., 36, 2008
7ZKD
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BU of 7zkd by Molmil
The NMR structure of the MAX47 effector from Magnaporthe Oryzae
分子名称: MAX effector protein
著者Lahfa, M, Padilla, A, de Guillen, K, Pissarra, J, Raji, M, Cesari, S, Kroj, T, Gladieux, P, Roumestand, C, Barthe, P.
登録日2022-04-12
公開日2023-04-26
最終更新日2023-11-08
実験手法SOLUTION NMR
主引用文献1 H, 13 C, 15 N backbone and side-chain NMR assignments for three MAX effectors from Magnaporthe oryzae.
Biomol.Nmr Assign., 16, 2022
4P1L
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Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target EFI-510085, with bound d-glucuronate, spg i213
分子名称: GLYCEROL, SULFATE ION, TRAP dicarboxylate transporter, ...
著者Vetting, M.W, Al Obaidi, N.F, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-02-26
公開日2014-03-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
8IBW
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BU of 8ibw by Molmil
Structure of R2 with 3'UTR and DNA in binding state
分子名称: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ...
著者Deng, P, Tan, S, Wang, J, Liu, J.J.
登録日2023-02-10
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
8IBZ
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Structure of R2 with 5'ORF and 3'UTR
分子名称: 5ORF-linker-3UTR, Reverse transcriptase-like protein, ZINC ION
著者Deng, P, Tan, S, Wang, J, Liu, J.J.
登録日2023-02-10
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
3BOY
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BU of 3boy by Molmil
Crystal structure of the HutP antitermination complex bound to the HUT mRNA
分子名称: 5'-R(*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP*UP*UP*U)-3', HISTIDINE, Hut operon positive regulatory protein, ...
著者Kumarevel, T.S, Balasundaresan, D, Jeyakanthan, J, Shinkai, A, Yokoyama, S, Kumar, P.K.R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-12-18
公開日2008-01-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of HutP complexed with the 55-mer RNA
To be Published
1KLF
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BU of 1klf by Molmil
FIMH ADHESIN-FIMC CHAPERONE COMPLEX WITH D-MANNOSE
分子名称: CHAPERONE PROTEIN FIMC, FIMH PROTEIN, alpha-D-mannopyranose
著者Hung, C.S, Bouckaert, J.
登録日2001-12-11
公開日2002-06-05
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection.
Mol.Microbiol., 44, 2002
3BQ9
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Crystal structure of predicted nucleotide-binding protein from Idiomarina baltica OS145
分子名称: GLYCEROL, Predicted Rossmann fold nucleotide-binding domain-containing protein, SULFATE ION
著者Patskovsky, Y, Toro, R, Meyer, A.J, Dickey, M, Eberle, M, Koss, J, Groshong, C, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2007-12-19
公開日2008-01-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Predicted Nucleotide-Binding Protein from Idiomarina baltica.
To be Published
7ZIH
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Crystal structure of human tryptophan hydroxylase 1 in complex with inhibitor AG-01-128
分子名称: 8-(1~{H}-benzimidazol-2-ylmethyl)-3-ethyl-7-(phenylmethyl)purine-2,6-dione, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
著者Schuetz, A, Gogolin, A, Pfeifer, J, Mallow, K, Nazare, M, Specker, E, Heinemann, U.
登録日2022-04-08
公開日2022-09-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.46890831 Å)
主引用文献Structure-Based Design of Xanthine-Benzimidazole Derivatives as Novel and Potent Tryptophan Hydroxylase Inhibitors.
J.Med.Chem., 65, 2022
5KKJ
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2.0-Angstrom In situ Mylar structure of hen egg-white lysozyme (HEWL) at 293 K
分子名称: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETIC ACID, CHLORIDE ION, ...
著者Broecker, J, Ernst, O.P.
登録日2016-06-21
公開日2017-02-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献A Versatile System for High-Throughput In Situ X-ray Screening and Data Collection of Soluble and Membrane-Protein Crystals.
Cryst Growth Des, 16, 2016
8IBY
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Structure of R2 with 5'ORF
分子名称: 5'ORF RNA, Reverse transcriptase-like protein, ZINC ION
著者Deng, P, Tan, S, Wang, J, Liu, J.J.
登録日2023-02-10
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
5BRW
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Catalytic Improvement of an Artificial Metalloenzyme by Computational Design
分子名称: ACETATE ION, Carbonic anhydrase 2, SULFATE ION, ...
著者Heinisch, T, Pellizzoni, M, Duerrenberger, M, Tinberg, C.E, Koehler, V, Klehr, J, Haeussinger, D, Baker, D, Ward, T.R.
登録日2015-06-01
公開日2015-06-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Improving the Catalytic Performance of an Artificial Metalloenzyme by Computational Design.
J.Am.Chem.Soc., 137, 2015
7M0G
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BU of 7m0g by Molmil
Magic Angle Spinning NMR Structure of Human Cofilin-2 Assembled on Actin Filaments
分子名称: Cofilin-2
著者Kraus, J, Polenova, T, Perilla, J.P, Xu, C.
登録日2021-03-10
公開日2022-04-20
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode.
Nat Commun, 13, 2022
5BS5
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EPSP synthase from Acinetobacter baumannii
分子名称: 3-phosphoshikimate 1-carboxyvinyltransferase
著者Sutton, K.A, Schultz, L.W, Russo, T.A, Breen, J, Umland, T.C.
登録日2015-06-01
公開日2016-02-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献EPSP synthase from Acinetobacter baumannii
Acta Crystallogr.,Sect.F, 2016
4P3L
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CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM CHROMOHALOBACTER SALEXIGENS DSM 3043 (Csal_2479), TARGET EFI-510085, WITH BOUND GLUCURONATE, SPG P6122
分子名称: CHLORIDE ION, TRAP dicarboxylate transporter, DctP subunit, ...
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-03-09
公開日2014-04-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015

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件を2024-08-14に公開中

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