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PDB: 395 results

5ZX8
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Crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CITRATE ANION, Peptidyl-tRNA hydrolase
Authors:Matsumoto, A, Uehara, U, Shimizu, Y, Ueda, T, Uchiumi, T, Ito, K.
Deposit date:2018-05-18
Release date:2018-09-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus.
Proteins, 87, 2019
6J3L
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BU of 6j3l by Molmil
Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0
Descriptor: 60S acidic ribosomal protein P0
Authors:Choi, K.H.A, Lee, K.M, Yang, L, Wing-Heng Yu, C, Banfield, D.K, Ito, K, Uchiumi, T, Wong, K.B.
Deposit date:2019-01-04
Release date:2019-09-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation.
Biochemistry, 58, 2019
6JI2
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BU of 6ji2 by Molmil
Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex
Descriptor: Archaeal ribosomal stalk protein aP1, Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Maruyama, K, Imai, H, Kawamura, M, Ishino, S, Ishino, Y, Ito, K, Uchiumi, T.
Deposit date:2019-02-20
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations.
Sci Rep, 9, 2019
1AUG
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BU of 1aug by Molmil
CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS
Descriptor: PYROGLUTAMYL PEPTIDASE-1
Authors:Odagaki, Y, Hayashi, A, Okada, K, Hirotsu, K, Kabashima, T, Ito, K, Yoshimoto, T, Tsuru, D, Sato, M, Clardy, J.
Deposit date:1997-08-26
Release date:1999-03-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease.
Structure Fold.Des., 7, 1999
1KOL
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BU of 1kol by Molmil
Crystal structure of formaldehyde dehydrogenase
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ZINC ION, ...
Authors:Tanaka, N, Kusakabe, Y, Ito, K, Yoshimoto, T, Nakamura, K.T.
Deposit date:2001-12-21
Release date:2002-12-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Formaldehyde Dehydrogenase from Pseudomonas putida: the Structural Origin of the Tightly Bound Cofactor in Nicotinoprotein Dehydrogenases
J.mol.biol., 324, 2002
1IRE
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BU of 1ire by Molmil
Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila
Descriptor: COBALT (II) ION, Nitrile Hydratase
Authors:Miyanaga, A, Fushinobu, S, Ito, K, Wakagi, T.
Deposit date:2001-10-01
Release date:2002-10-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of cobalt-containing nitrile hydratase.
Biochem.Biophys.Res.Commun., 288, 2001
1J2U
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BU of 1j2u by Molmil
Creatininase Zn
Descriptor: SULFATE ION, ZINC ION, creatinine amidohydrolase
Authors:Yoshimoto, T, Tanaka, N, Kanada, N, Inoue, T, Nakajima, Y, Haratake, M, Nakamura, K.T, Xu, Y, Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1J2T
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BU of 1j2t by Molmil
Creatininase Mn
Descriptor: MANGANESE (II) ION, SULFATE ION, ZINC ION, ...
Authors:Yoshimoto, T, Tanaka, N, Kanada, N, Inoue, T, Nakajima, Y, Haratake, M, Nakamura, K.T, Xu, Y, Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
2ZTM
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BU of 2ztm by Molmil
T190S mutant of D-3-hydroxybutyrate dehydrogenase
Descriptor: (3S)-3-HYDROXYBUTANOIC ACID, D(-)-3-hydroxybutyrate dehydrogenase, MAGNESIUM ION, ...
Authors:Nakashima, K, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2008-10-07
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Closed complex of the D-3-hydroxybutyrate dehydrogenase induced by an enantiomeric competitive inhibitor.
J.Biochem., 145, 2009
3A6J
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BU of 3a6j by Molmil
E122Q mutant creatininase complexed with creatine
Descriptor: Creatinine amidohydrolase, N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE, SULFATE ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6D
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BU of 3a6d by Molmil
Creatininase complexed with 1-methylguanidine
Descriptor: 1-METHYLGUANIDINE, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
2ZXG
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BU of 2zxg by Molmil
Aminopeptidase N complexed with the aminophosphinic inhibitor of PL250, a transition state analogue
Descriptor: Aminopeptidase N, GLYCEROL, N-{(2S)-3-[(1R)-1-aminoethyl](hydroxy)phosphoryl-2-benzylpropanoyl}-L-phenylalanine, ...
Authors:Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2008-12-24
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of aminopeptidase N from Escherichia coli complexed with the transition-state analogue aminophosphinic inhibitor PL250
Acta Crystallogr.,Sect.D, 65, 2009
2ZTL
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BU of 2ztl by Molmil
Closed conformation of D-3-hydroxybutyrate dehydrogenase complexed with NAD+ and L-3-hydroxybutyrate
Descriptor: (3S)-3-HYDROXYBUTANOIC ACID, D(-)-3-hydroxybutyrate dehydrogenase, GLYCEROL, ...
Authors:Nakashima, K, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2008-10-07
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Closed complex of the D-3-hydroxybutyrate dehydrogenase induced by an enantiomeric competitive inhibitor.
J.Biochem., 145, 2009
3ASV
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BU of 3asv by Molmil
The Closed form of serine dehydrogenase complexed with NADP+
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION, Short-chain dehydrogenase/reductase SDR
Authors:Yamazawa, R, Nakajima, Y, Yoshimoto, T, Ito, K.
Deposit date:2010-12-21
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of serine dehydrogenase from Escherichia coli: important role of the C-terminal region for closed-complex formation.
J.Biochem., 149, 2011
3A6H
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BU of 3a6h by Molmil
W154A mutant creatininase
Descriptor: CHLORIDE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6L
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BU of 3a6l by Molmil
E122Q mutant creatininase, Zn-Zn type
Descriptor: CHLORIDE ION, Creatinine amidohydrolase, ZINC ION
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
2ZTU
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BU of 2ztu by Molmil
T190A mutant of D-3-hydroxybutyrate dehydrogenase complexed with NAD+
Descriptor: D(-)-3-hydroxybutyrate dehydrogenase, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Nakashima, K, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2008-10-09
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Closed complex of the D-3-hydroxybutyrate dehydrogenase induced by an enantiomeric competitive inhibitor.
J.Biochem., 145, 2009
2ZTV
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BU of 2ztv by Molmil
The binary complex of D-3-hydroxybutyrate dehydrogenase with NAD+
Descriptor: D(-)-3-hydroxybutyrate dehydrogenase, GLYCEROL, MAGNESIUM ION, ...
Authors:Nakashima, K, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2008-10-09
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Closed complex of the D-3-hydroxybutyrate dehydrogenase induced by an enantiomeric competitive inhibitor.
J.Biochem., 145, 2009
3A6F
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BU of 3a6f by Molmil
W174F mutant creatininase, Type II
Descriptor: CACODYLATE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6G
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BU of 3a6g by Molmil
W154F mutant creatininase
Descriptor: Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3AGK
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BU of 3agk by Molmil
Crystal structure of archaeal translation termination factor, aRF1
Descriptor: Peptide chain release factor subunit 1
Authors:Kobayashi, K, Kikuno, I, Ishitani, R, Ito, K, Nureki, O.
Deposit date:2010-04-01
Release date:2010-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Omnipotent role of archaeal elongation factor 1 alpha (EF1{alpha}) in translational elongation and termination, and quality control of protein synthesis
Proc.Natl.Acad.Sci.USA, 107, 2010
3A6E
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BU of 3a6e by Molmil
W174F mutant creatininase, type I
Descriptor: CACODYLATE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6K
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BU of 3a6k by Molmil
The E122Q mutant creatininase, Mn-Zn type
Descriptor: CHLORIDE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
6L37
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BU of 6l37 by Molmil
X-ray structure of human PPARalpha ligand binding domain-GW9662-ciprofibrate co-crystals obtained by delipidation and co-crystallization
Descriptor: 2-chloro-5-nitro-N-phenylbenzamide, 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid, Peroxisome proliferator-activated receptor alpha
Authors:Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
Deposit date:2019-10-09
Release date:2020-11-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6L36
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X-ray structure of human PPARalpha ligand binding domain-GW9662-fenofibric acid co-crystals obtained by delipidation and co-crystallization
Descriptor: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor alpha
Authors:Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
Deposit date:2019-10-09
Release date:2020-11-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020

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數據於2024-07-17公開中

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