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PDB: 57 results

5Y95
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BU of 5y95 by Molmil
Haddock model of mSIN3B PAH1 domain
Descriptor: Paired amphipathic helix protein Sin3b, propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate
Authors:Kurita, J, Hirao, Y, Nishimura, Y.
Deposit date:2017-08-22
Release date:2017-10-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.
Bioorg. Med. Chem. Lett., 27, 2017
5XV8
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BU of 5xv8 by Molmil
Solution structure of the complex between UVSSA acidic region and TFIIH p62 PH domain
Descriptor: General transcription factor IIH subunit 1, UV-stimulated scaffold protein A
Authors:Okuda, M, Nishimura, Y.
Deposit date:2017-06-27
Release date:2017-11-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways
Nucleic Acids Res., 45, 2017
8I53
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BU of 8i53 by Molmil
Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
Descriptor: General transcription and DNA repair factor IIH subunit tfb1
Authors:Okuda, M, Nishimura, Y.
Deposit date:2023-01-23
Release date:2023-11-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural polymorphism of the PH domain in TFIIH.
Biosci.Rep., 43, 2023
3APM
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BU of 3apm by Molmil
Crystal structure of the human SNP PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
6K5W
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BU of 6k5w by Molmil
Solution structure of the chromodomain of yeast Eaf3
Descriptor: Chromatin modification-related protein EAF3
Authors:Okuda, M, Nishimura, Y.
Deposit date:2019-05-31
Release date:2020-02-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues.
Biosci.Rep., 40, 2020
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
2Z33
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BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
Descriptor: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
Authors:Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
Deposit date:2007-05-31
Release date:2008-04-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
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