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PDB: 229 件
3ATZ
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Crystal structure of TcOYE with pHBA
分子名称: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Prostaglandin F2a synthase
著者Okamoto, N, Yamaguchi, K, Mizohata, E, Tokuoka, K, Uchiyama, N, Sugiyama, S, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2012-02-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3ATY
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BU of 3aty by Molmil
Crystal structure of TcOYE
分子名称: FLAVIN MONONUCLEOTIDE, Prostaglandin F2a synthase
著者Yamaguchi, K, Okamoto, N, Tokuoka, K, Sugiyama, S, Uchiyama, N, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2011-05-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
2ZWS
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BU of 2zws by Molmil
Crystal Structure Analysis of neutral ceramidase from Pseudomonas aeruginosa
分子名称: FORMIC ACID, GLYCEROL, MAGNESIUM ION, ...
著者Kakuta, Y, Okino, N, Inoue, T, Okano, H, Ito, M.
登録日2008-12-17
公開日2009-03-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
2YVK
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BU of 2yvk by Molmil
Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis
分子名称: 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase
著者Tamura, H, Inoue, T, Kai, Y, Matsumura, H.
登録日2007-04-13
公開日2008-01-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism
Protein Sci., 17, 2008
3AG5
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BU of 3ag5 by Molmil
Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus
分子名称: Pantothenate synthetase
著者Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
登録日2010-03-19
公開日2010-07-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
3VKW
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BU of 3vkw by Molmil
Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus
分子名称: Replicase large subunit, SULFATE ION
著者Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E.
登録日2011-11-22
公開日2012-07-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the superfamily 1 helicase from tomato mosaic virus
J.Virol., 86, 2012
3WNJ
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BU of 3wnj by Molmil
1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ACETIC ACID, ...
著者Fukuda, Y, Inoue, T.
登録日2013-12-10
公開日2014-12-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WR7
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Crystal Structure of Spermidine Acetyltransferase from Escherichia coli
分子名称: COENZYME A, SPERMIDINE, Spermidine N1-acetyltransferase
著者Sugiyama, S, Ishikawa, S, Tomitori, S, Niiyama, M, Hirose, M, Miyazaki, Y, Higashi, K, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Kashiwagi, K, Igarashi, K, Matsumura, H.
登録日2014-02-20
公開日2015-09-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase
Int.J.Biochem.Cell Biol., 76, 2016
3WNI
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1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2013-12-10
公開日2014-12-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WQT
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BU of 3wqt by Molmil
Staphylococcus aureus FtsA complexed with AMPPNP
分子名称: CHLORIDE ION, Cell division protein FtsA, MAGNESIUM ION, ...
著者Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
登録日2014-02-01
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
3WKP
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C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
著者Fukuda, Y, Inoue, T.
登録日2013-10-29
公開日2013-12-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
to be published
3WQU
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BU of 3wqu by Molmil
Staphylococcus aureus FtsA complexed with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division protein FtsA, MAGNESIUM ION
著者Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
登録日2014-02-01
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
3WKQ
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BU of 3wkq by Molmil
Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2013-10-29
公開日2013-12-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
to be published
3X1G
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BU of 3x1g by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans showing two coordination geometries at the T2Cu site
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1E
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BU of 3x1e by Molmil
Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1F
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BU of 3x1f by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1N
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BU of 3x1n by Molmil
Nitrite-bound thermostable copper nitrite reductase at 320 K
分子名称: COPPER (II) ION, NITRITE ION, Nitrite reductase
著者Fukuda, Y, Inoue, T.
登録日2014-11-25
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献High-temperature and high-resolution crystallography of thermostable copper nitrite reductase.
Chem.Commun.(Camb.), 51, 2015
3VI7
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BU of 3vi7 by Molmil
Human hematopoietic prostaglandin D synthase inhibitor complex structures
分子名称: CALCIUM ION, CIBACRON BLUE, GLUTATHIONE, ...
著者Kado, Y, Inoue, T.
登録日2011-09-21
公開日2012-04-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human hematopoietic prostaglandin D synthase inhibitor complex structures
J.Biochem., 151, 2012
3VI5
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BU of 3vi5 by Molmil
Human hematopoietic prostaglandin D synthase inhibitor complex structures
分子名称: 1-amino-9,10-dioxo-4-[(4-sulfamoylphenyl)amino]-9,10-dihydroanthracene-2-sulfonic acid, CALCIUM ION, GLUTATHIONE, ...
著者Kado, Y, Inoue, T.
登録日2011-09-21
公開日2012-04-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human hematopoietic prostaglandin D synthase inhibitor complex structures
J.Biochem., 151, 2012
2E2G
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BU of 2e2g by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (pre-oxidation form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
登録日2006-11-13
公開日2007-11-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2E2M
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BU of 2e2m by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfinic acid form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
登録日2006-11-14
公開日2007-11-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2CZR
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BU of 2czr by Molmil
Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
分子名称: GLYCEROL, TBP-interacting protein, ZINC ION
著者Yamamoto, T, Matsuda, T, Inoue, T, Matsumura, H, Morikawa, M, Kanaya, S, Kai, Y.
登録日2005-07-15
公開日2006-02-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Protein Sci., 15, 2006
2CW8
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BU of 2cw8 by Molmil
Crystal structure of intein homing endonuclease II
分子名称: Endonuclease PI-PkoII, GLYCEROL, SULFATE ION
著者Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
登録日2005-06-17
公開日2006-04-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW7
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BU of 2cw7 by Molmil
Crystal structure of intein homing endonuclease II
分子名称: Endonuclease PI-PkoII, SULFATE ION
著者Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
登録日2005-06-17
公開日2006-04-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2DV6
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Crystal structure of nitrite reductase from Hyphomicrobium denitrificans
分子名称: COPPER (II) ION, Nitrite reductase, POTASSIUM ION
著者Nojiri, M, Xie, Y, Yamamoto, T, Inoue, T, Suzuki, S, Kai, Y.
登録日2006-07-28
公開日2007-02-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure and function of a hexameric copper-containing nitrite reductase.
Proc.Natl.Acad.Sci.USA, 104, 2007

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