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PDB: 277 件
7BY1
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BU of 7by1 by Molmil
Crystal structure of GCN5 PCAF N-terminal domain
分子名称: Histone acetyltransferase KAT2A, ZINC ION
著者Hibi, R, Toma-Fukai, S, Shimizu, T.
登録日2020-04-21
公開日2020-08-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of GCN5 PCAF N-terminal domain reveals atypical ubiquitin ligase structure.
J.Biol.Chem., 295, 2020
5JKE
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BU of 5jke by Molmil
Crystal structure of human IZUMO1-JUNO complex (crystal form 3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Izumo sperm-egg fusion protein 1, ...
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
5JK9
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BU of 5jk9 by Molmil
Crystal structure of human IZUMO1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Izumo sperm-egg fusion protein 1
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
5WRD
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BU of 5wrd by Molmil
Crystal structure of LC3B in complex with FYCO1 LIR
分子名称: GLYCEROL, Microtubule-associated proteins 1A/1B light chain 3B, Peptide from FYVE and coiled-coil domain-containing protein 1
著者Sakurai, S, Ohto, U, Shimizu, T.
登録日2016-12-01
公開日2017-03-29
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The crystal structure of mouse LC3B in complex with the FYCO1 LIR reveals the importance of the flanking region of the LIR motif
Acta Crystallogr F Struct Biol Commun, 73, 2017
5JKC
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BU of 5jkc by Molmil
Crystal structure of human IZUMO1-JUNO complex (crystal form 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Izumo sperm-egg fusion protein 1, ...
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
5JKD
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BU of 5jkd by Molmil
Crystal structure of human IZUMO1-JUNO complex (crystal form 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Izumo sperm-egg fusion protein 1, ...
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
5JKB
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BU of 5jkb by Molmil
Crystal structure of human JUNO (crystal form 2)
分子名称: CHLORIDE ION, Sperm-egg fusion protein Juno
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
5JKA
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BU of 5jka by Molmil
Crystal structure of human JUNO (crystal form 1)
分子名称: CHLORIDE ION, Sperm-egg fusion protein Juno, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Ohto, U, Ishida, H, Shimizu, T.
登録日2016-04-26
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization
Nature, 534, 2016
6IR4
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BU of 6ir4 by Molmil
Crystal structure of BioU from Synechocystis sp.PCC6803 (apo form)
分子名称: Slr0355 protein
著者Sakaki, K, Oishi, K, Shimizu, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2018-11-10
公開日2020-01-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6IF5
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BU of 6if5 by Molmil
Crystal structure of monkey TLR7 in complex with 2',3'-cGMP (Guanosine 2',3'-cyclic phosphate)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE, ...
著者Zhang, Z, Ohto, U, Shimizu, T.
登録日2018-09-18
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands.
Cell Rep, 25, 2018
6IU1
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BU of 6iu1 by Molmil
Peroxiredoxin from Pyrococcus horikoshii 0Cys mutant)
分子名称: Peroxiredoxin
著者Nakamura, T, Himiyama, T.
登録日2018-11-27
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis.
J.Biochem., 166, 2019
6IU0
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BU of 6iu0 by Molmil
Peroxiredoxin from Thermococcus kodakaraensis (0Cys mutant)
分子名称: Peroxiredoxin
著者Nakamura, T, Himiyama, T.
登録日2018-11-27
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis.
J.Biochem., 166, 2019
5XDR
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BU of 5xdr by Molmil
Crystal structure of human DEAH-box RNA helicase DHX15 in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15, ...
著者Murakami, K, Nakano, K, Shimizu, T, Ohto, U.
登録日2017-03-29
公開日2017-06-21
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of human DEAH-box RNA helicase 15 reveals a domain organization of the mammalian DEAH/RHA family
Acta Crystallogr F Struct Biol Commun, 73, 2017
5YAQ
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BU of 5yaq by Molmil
Crystal structure of scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity complexed with scyllo-inosose
分子名称: (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity
著者Fukano, K, Shimizu, T, Sasaki, Y, Nakamura, A, Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAB
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BU of 5yab by Molmil
Crystal structure of scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity
分子名称: ACETATE ION, Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity
著者Fukano, K, Shimizu, T, Sasaki, Y, Nakamura, A, Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
6ITZ
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BU of 6itz by Molmil
Peroxiredoxin from Thermococcus kodakaraensis
分子名称: Peroxiredoxin
著者Nakamura, T, Himiyama, T.
登録日2018-11-27
公開日2019-03-06
最終更新日2019-07-17
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis.
J.Biochem., 166, 2019
7BPR
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BU of 7bpr by Molmil
Crystal structure of human TEX101
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, PLATINUM (II) ION, Testis-expressed protein 101
著者Masutani, M, Sakurai, S, Shimizu, T, Ohto, U.
登録日2020-03-23
公開日2020-07-15
最終更新日2020-12-23
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of TEX101, a glycoprotein essential for male fertility, reveals the presence of tandemly arranged Ly6/uPAR domains.
Febs Lett., 594, 2020
5YAP
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BU of 5yap by Molmil
Crystal structure of scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity complexed with L-glucono-1,5-lactone
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, L-glucono-1,5-lactone, Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity
著者Fukano, K, Shimizu, T, Sasaki, Y, Nakamura, A, Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
7BPS
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BU of 7bps by Molmil
Crystal structure of mouse TEX101
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Testis-expressed protein 101, ...
著者Masutani, M, Sakurai, S, Shimizu, T, Ohto, U.
登録日2020-03-23
公開日2020-07-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of TEX101, a glycoprotein essential for male fertility, reveals the presence of tandemly arranged Ly6/uPAR domains.
Febs Lett., 594, 2020
5Y7Y
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BU of 5y7y by Molmil
Crystal structure of AhRR/ARNT complex
分子名称: Aryl hydrocarbon receptor nuclear translocator, Aryl hydrocarbon receptor repressor, GLYCEROL
著者Sakurai, S, Shimizu, T, Ohto, U.
登録日2017-08-18
公開日2017-09-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The crystal structure of the AhRR-ARNT heterodimer reveals the structural basis of the repression of AhR-mediated transcription.
J. Biol. Chem., 292, 2017
7BQI
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BU of 7bqi by Molmil
Crystal structure of FYCO1 RUN domain
分子名称: FYVE and coiled-coil domain-containing protein 1
著者Sakurai, S, Shimizu, T, Ohto, U.
登録日2020-03-24
公開日2020-08-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of the FYCO1 RUN domain suggests possible interfaces with small GTPases.
Acta Crystallogr.,Sect.F, 76, 2020
5YA8
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BU of 5ya8 by Molmil
Crystal structure of scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity complexed with myo-inositol
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity
著者Fukano, K, Shimizu, T, Sasaki, Y, Nakamura, A, Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5Z15
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BU of 5z15 by Molmil
Crystal structure of human TLR8 in complex with CU-CPT9c
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(7-chloranylquinolin-4-yl)-2-methyl-phenol, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2017-12-25
公開日2018-07-04
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Inhibition of Toll-like Receptor 8 by Specifically Targeting a Unique Allosteric Site and Locking Its Resting State
To Be Published
5WYZ
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BU of 5wyz by Molmil
Crystal structure of human TLR8 in complex with CU-CPT9b
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(3-methyl-4-oxidanyl-phenyl)quinolin-7-ol, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2017-01-16
公開日2017-12-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Small-molecule inhibition of TLR8 through stabilization of its resting state
Nat. Chem. Biol., 14, 2018
5WYX
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BU of 5wyx by Molmil
Crystal structure of human TLR8 in complex with CU-CPT8m
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 7-(3-methylphenyl)pyrazolo[1,5-a]pyrimidine-3-carboxamide, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2017-01-16
公開日2017-12-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Small-molecule inhibition of TLR8 through stabilization of its resting state
Nat. Chem. Biol., 14, 2018

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