Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17801 results

7TVS
DownloadVisualize
BU of 7tvs by Molmil
The Crystal Structure of SARS-CoV-2 Omicron Mpro (P132H) in complex with demethylated analog of masitinib
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide
Authors:Tan, K, Maltseva, N.I, Endres, M.J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-02-05
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.88612878 Å)
Cite:The Crystal Structure of SARS-CoV-2 Omicron Mpro (P132H) in complex with demethylated analog of masitinib
To Be Published
7TVX
DownloadVisualize
BU of 7tvx by Molmil
The Crystal Structure of SARS-CoV-2 Omicron Mpro (P132H) in complex with masitinib
Descriptor: 3C-like proteinase nsp5, Masitinib
Authors:Tan, K, Maltseva, N.I, Endres, M.J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-02-06
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.094 Å)
Cite:The Crystal Structure of SARS-CoV-2 Omicron Mpro (P132H) in complex with masitinib
To Be Published
4OMX
DownloadVisualize
BU of 4omx by Molmil
Crystal structure of goat beta-lactoglobulin (trigonal form)
Descriptor: FORMAMIDE, SULFATE ION, UREA, ...
Authors:Loch, J.I, Swiatek, S, Czub, M, Ludwikowska, M, Lewinski, K.
Deposit date:2014-01-27
Release date:2014-11-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational variability of goat beta-lactoglobulin: Crystallographic and thermodynamic studies.
Int.J.Biol.Macromol., 72C, 2014
4B3R
DownloadVisualize
BU of 4b3r by Molmil
Crystal structure of the 30S ribosome in complex with compound 30
Descriptor: (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-4,6-O-[(1R)-3-phenylpropylidene]-alpha-D-glucopyranoside, 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Ng, C.L, Lang, K, Shcherbakov, D, Matt, T, Perez-Fernandez, D, Patak, R, Meyer, M, Duscha, S, Akbergenov, R, Boukari, H, Freihofer, P, Kudyba, I, Reddy, M.S.K, Nandurikar, R.S, Ramakrishnan, V, Vasella, A, Bottger, E.C.
Deposit date:2012-07-26
Release date:2013-08-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
1IMR
DownloadVisualize
BU of 1imr by Molmil
MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG)
Descriptor: 4'-DEOXY-4'-IODODOXORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')
Authors:Berger, I, Su, L, Spitzner, J.R, Kang, C, Burke, T.G, Rich, A.
Deposit date:1995-10-23
Release date:1996-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular structure of the halogenated anti-cancer drug iododoxorubicin complexed with d(TGTACA) and d(CGATCG).
Nucleic Acids Res., 23, 1995
7TP4
DownloadVisualize
BU of 7tp4 by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K398.22
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, K398.22 heavy chain, ...
Authors:Yuan, M, Zhu, X, Wilson, I.A.
Deposit date:2022-01-24
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques.
Sci Transl Med, 14, 2022
2CBJ
DownloadVisualize
BU of 2cbj by Molmil
Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc
Descriptor: CHLORIDE ION, HYALURONIDASE, O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
Authors:Rao, F.V, Dorfmueller, H.C, Villa, F, Allwood, M, Eggleston, I.M, van Aalten, D.M.F.
Deposit date:2006-01-05
Release date:2006-02-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis.
EMBO J., 25, 2006
2FPD
DownloadVisualize
BU of 2fpd by Molmil
Sad structure determination: crystal structure of the intrinsic dimerization sh3 domain of the ib1 scaffold protein
Descriptor: C-jun-amino-terminal kinase interacting protein 1, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Kristensen, O, Dar, I, Gajhede, M.
Deposit date:2006-01-16
Release date:2006-02-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A unique set of SH3-SH3 interactions controls IB1 homodimerization
Embo J., 25, 2006
7THX
DownloadVisualize
BU of 7thx by Molmil
Cryo-EM structure of W6 possum enterovirus
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Wang, I, Jayawardena, N, Strauss, M, Bostina, M.
Deposit date:2022-01-12
Release date:2022-03-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Cryo-EM Structure of a Possum Enterovirus.
Viruses, 14, 2022
7U1H
DownloadVisualize
BU of 7u1h by Molmil
Crystal structure of Lens culinaris vicilin
Descriptor: Allergen Len c 1.0101
Authors:Robinson, K.A, Bakestani, I.D, Loewen, M.C.
Deposit date:2022-02-21
Release date:2022-03-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pea and lentil 7S globulin crystal structures with comparative immunoglobulin epitope mapping.
Food Chem (Oxf), 5, 2022
7U1I
DownloadVisualize
BU of 7u1i by Molmil
Crystal structure of Pisum sativum vicilin
Descriptor: Vicilin
Authors:Beavington, B.A.G, Bakestani, I.D, Robinson, K.A, Loewen, M.C.
Deposit date:2022-02-21
Release date:2022-03-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Pea and lentil 7S globulin crystal structures with comparative immunoglobulin epitope mapping.
Food Chem (Oxf), 5, 2022
8PNX
DownloadVisualize
BU of 8pnx by Molmil
Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens in PMP form
Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, ...
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O.
Deposit date:2023-07-03
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural determinants of dual substrate recognition in the transaminase from Blastococcus saxobsidens specific to D-amino acids and R-amines
To Be Published
1IFC
DownloadVisualize
BU of 1ifc by Molmil
REFINEMENT OF THE STRUCTURE OF RECOMBINANT RAT INTESTINAL FATTY ACID-BINDING APOPROTEIN AT 1.2 ANGSTROMS RESOLUTION
Descriptor: INTESTINAL FATTY ACID BINDING PROTEIN
Authors:Scapin, G, Gordon, J.I, Sacchettini, J.C.
Deposit date:1991-12-19
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Refinement of the structure of recombinant rat intestinal fatty acid-binding apoprotein at 1.2-A resolution.
J.Biol.Chem., 267, 1992
1IGF
DownloadVisualize
BU of 1igf by Molmil
CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS COMPLEX WITH PEPTIDE ANTIGEN AT 2.8 ANGSTROMS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, IGG1-KAPPA B13I2 FAB (HEAVY CHAIN), IGG1-KAPPA B13I2 FAB (LIGHT CHAIN)
Authors:Stanfield, R.L, Wilson, I.A.
Deposit date:1991-03-21
Release date:1992-04-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of an antibody to a peptide and its complex with peptide antigen at 2.8 A.
Science, 248, 1990
7TNJ
DownloadVisualize
BU of 7tnj by Molmil
Complex NNNN of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM)
Descriptor: CYCLOTHIAZIDE, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera
Authors:Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2022-01-21
Release date:2022-04-20
Last modified:2022-05-18
Method:ELECTRON MICROSCOPY (4.02 Å)
Cite:Opening of glutamate receptor channel to subconductance levels.
Nature, 605, 2022
2C4X
DownloadVisualize
BU of 2c4x by Molmil
Structural basis for the promiscuous specificity of the carbohydrate- binding modules from the beta-sandwich super family
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, ENDOGLUCANASE
Authors:Najmudin, S, Guerreiro, C.I.P.D, Carvalho, A.L, Bolam, D.N, Prates, J.A.M, Correia, M.A.S, Alves, V.D, Ferreira, L.M.A, Romao, M.J, Gilbert, H.J, Fontes, C.M.G.A.
Deposit date:2005-10-25
Release date:2005-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Xyloglucan is Recognized by Carbohydrate-Binding Modules that Interact with Beta-Glucan Chains.
J.Biol.Chem., 281, 2006
8QLQ
DownloadVisualize
BU of 8qlq by Molmil
Human MST3 (STK24) kinase in complex with macrocyclic inhibitor JA310
Descriptor: 1,2-ETHANEDIOL, Serine/threonine-protein kinase 24, macrocyclic inhibitor
Authors:Balourdas, D.I, Amrhein, J.A, Hanke, T, Knapp, S, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2023-09-20
Release date:2023-11-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Synthesis of Pyrazole-Based Macrocycles Leads to a Highly Selective Inhibitor for MST3.
J.Med.Chem., 67, 2024
4P78
DownloadVisualize
BU of 4p78 by Molmil
HicA3 and HicB3 toxin-antitoxin complex
Descriptor: GLYCEROL, HicA3 Toxin, HicB3 antitoxin
Authors:Li de la Sierra-Gallay, I, Bibi-Triki, S, van Tilbeurgh, H, Lazar, N, Pradel, E.
Deposit date:2014-03-26
Release date:2014-08-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Functional and Structural Analysis of HicA3-HicB3, a Novel Toxin-Antitoxin System of Yersinia pestis.
J.Bacteriol., 196, 2014
7U0C
DownloadVisualize
BU of 7u0c by Molmil
Crystal structure of broadly neutralizing antibody HEPC3.4
Descriptor: HEPC3.4 Fab Heavy Chain, HEPC3.4 Fab Light Chain
Authors:Flyak, A.I, Bjorkman, P.J.
Deposit date:2022-02-17
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals.
Nat Commun, 13, 2022
1L7N
DownloadVisualize
BU of 1l7n by Molmil
TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX)
Descriptor: ALUMINUM FLUORIDE, MAGNESIUM ION, PHOSPHOSERINE PHOSPHATASE, ...
Authors:Wang, W, Cho, H.S, Kim, R, Jancarik, J, Yokota, H, Nguyen, H.H, Grigoriev, I.V, Wemmer, D.E, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2002-03-16
Release date:2002-06-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.
J.Mol.Biol., 319, 2002
7U8L
DownloadVisualize
BU of 7u8l by Molmil
Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibody 31.a.83
Descriptor: Antibody Fab light chain, Hemagglutinin HA1 subunit, Hemagglutinin HA2 subunit, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2022-03-08
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (4.56 Å)
Cite:Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface.
Proc.Natl.Acad.Sci.USA, 119, 2022
1IKL
DownloadVisualize
BU of 1ikl by Molmil
NMR study of monomeric human interleukin-8 (minimized average structure)
Descriptor: HUMAN INTERLEUKIN-8 (MONOMERIC)
Authors:Rajarathnam, K, Clark-Lewis, I, Sykes, B.D.
Deposit date:1995-08-03
Release date:1995-10-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:1H NMR solution structure of an active monomeric interleukin-8.
Biochemistry, 34, 1995
6DPZ
DownloadVisualize
BU of 6dpz by Molmil
X-ray crystal structure of AmpC beta-lactamase with inhibitor
Descriptor: (1R,2S)-2-{[(pyrrolidin-1-yl)sulfonyl]amino}cyclooctane-1-carboxylic acid, Beta-lactamase
Authors:Singh, I.
Deposit date:2018-06-09
Release date:2018-07-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ultra-large library docking for discovering new chemotypes.
Nature, 566, 2019
4PLH
DownloadVisualize
BU of 4plh by Molmil
Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate.
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, OXAMIC ACID, SODIUM ION, ...
Authors:Boucher, J.I, Jacobowitz, J.R, Beckett, B.C, Classen, S, Theobald, D.L.
Deposit date:2014-05-16
Release date:2014-07-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases.
Elife, 3, 2014
7U8J
DownloadVisualize
BU of 7u8j by Molmil
Crystal structure of chimeric hemagglutinin cH4/3 in complex with broad protective antibody 31.a.83
Descriptor: Antibody Fab light chain, Hemagglutinin HA1 subunit, Hemagglutinin HA2 subunit, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2022-03-08
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (4.9 Å)
Cite:Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface.
Proc.Natl.Acad.Sci.USA, 119, 2022

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon