Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17892 results

9IIL
DownloadVisualize
BU of 9iil by Molmil
Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide in the presence of poly(ethylene glycol) at 2.20 A resolution
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Jeyakanthan, J, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-06-20
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide in the presence of poly(ethylene glycol) at 2.20 A resolution
To Be Published
9FQ0
DownloadVisualize
BU of 9fq0 by Molmil
Human NatA-NAC-MAP1 80S ribosome complex
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L19, ...
Authors:Klein, M.A, Wild, K, Sinning, I.
Deposit date:2024-06-14
Release date:2024-07-03
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.67 Å)
Cite:Multi-protein assemblies orchestrate enzymatic processing of the nascent chain on the 80S ribosome
To Be Published
9IK1
DownloadVisualize
BU of 9ik1 by Molmil
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Kim, S, Kim, G.R, Kim, Y.O, Han, X, Nagel, J, Kim, J, Song, D.I, Muller, C.E, Yoon, M.H, Jin, M.S, Kim, Y.C.
Deposit date:2024-06-26
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Discovery of Triazolopyrimidine Derivatives as Selective P2X3 Receptor Antagonists Binding to an Unprecedented Allosteric Site as Evidenced by Cryo-Electron Microscopy.
J.Med.Chem., 67, 2024
9C4G
DownloadVisualize
BU of 9c4g by Molmil
Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Lomakin, I.B, Devarkar, S.C, Bunick, C.G.
Deposit date:2024-06-04
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Mechanistic basis for the translation inhibition of Cutibacterium acnes by Clindamycin.
J Invest Dermatol., 2024
9FYB
DownloadVisualize
BU of 9fyb by Molmil
Structural Insights into the NMN Complex of Nicotinate Nucleotide Adenylyltransferase from Enterococcus faecium via Co-Crystallization Studies
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Pandian, R, Jeje, O.A, Sayed, Y, Achilonu, I.A.
Deposit date:2024-07-03
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural Insights into the NMN Complex of Nicotinate Nucleotide Adenylyltransferase from Enterococcus faecium via Co-Crystallization Studies
To be published
9F6C
DownloadVisualize
BU of 9f6c by Molmil
Cardiac myosin motor domain in the pre-powerstroke state co-crystallized with the inhibitor aficamten
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Myosin-7, ...
Authors:Robert-Paganin, J, Hartman, J.J, Morgan, B.P, Malik, F.I, Houdusse, A.
Deposit date:2024-05-01
Release date:2024-09-04
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Aficamten is a small-molecule cardiac myosin inhibitor designed to treat hypertrophic cardiomyopathy.
Nat Cardiovasc Res, 3, 2024
6O96
DownloadVisualize
BU of 6o96 by Molmil
Dot1L bound to the H2BK120 Ubiquitinated nucleosome
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Vasilyev, N, Chen, R, Nudler, E, Armache, J.-P, Armache, K.-J.
Deposit date:2019-03-13
Release date:2019-04-24
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination.
Mol.Cell, 74, 2019
5NL0
DownloadVisualize
BU of 5nl0 by Molmil
Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1
Descriptor: DNA (197-MER), Histone H1.0-B, Histone H2A type 1, ...
Authors:Garcia-Saez, I, Petosa, C, Dimitrov, S.
Deposit date:2017-04-03
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (5.4 Å)
Cite:Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Mol. Cell, 66, 2017
7OO9
DownloadVisualize
BU of 7oo9 by Molmil
Structure of Chloroflexus islandicus LOV domain C85A variant (CisFbFP)
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, Hybrid sensor histidine kinase/response regulator
Authors:Gushchin, I, Remeeva, A, Goncharov, I.M.
Deposit date:2021-05-26
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution structure of a naturally red-shifted LOV domain.
Biochem.Biophys.Res.Commun., 567, 2021
6CI2
DownloadVisualize
BU of 6ci2 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, formyltransferase PseJ
Authors:Reimer, J.M, Jiang, J, Harb, I, Schmeing, T.M.
Deposit date:2018-02-23
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6CT1
DownloadVisualize
BU of 6ct1 by Molmil
TFE-induced NMR structure of a novel bioactive peptide (PaDBS1R7) derived from a Pyrobaculum aerophilum ribosomal protein (L39e)
Descriptor: PaDBS1R7
Authors:Cardoso, M.H, Chan, L.Y, Candido, E.S, Torres, M.T, Oshiro, K.G.N, Silva, I.C, Goncalves, S, Buccini, D.F, Lu, T, Santos, N.C, de la Fuente-Nunez, C, Craik, D.J, Franco, O.L.
Deposit date:2018-03-21
Release date:2019-09-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An N-capping asparagine-lysine-proline (NKP) motif contributes to a hybrid flexible/stable multifunctional peptide scaffold
Chem Sci, 13, 2022
6CQF
DownloadVisualize
BU of 6cqf by Molmil
Crystal structure of HPK1 in complex an inhibitor G1858
Descriptor: Mitogen-activated protein kinase kinase kinase kinase 1, N-{2-(3,3-difluoropyrrolidin-1-yl)-6-[(3R)-pyrrolidin-3-yl]pyrimidin-4-yl}-1-(propan-2-yl)-1H-pyrazolo[4,3-c]pyridin-6-amine
Authors:Wu, P, Lehoux, I, Mortara, K, Franke, Y, Chan, B.K, Wang, W.
Deposit date:2018-03-15
Release date:2018-12-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.246 Å)
Cite:Hematopoietic Progenitor Kinase-1 Structure in a Domain-Swapped Dimer.
Structure, 27, 2019
6D0G
DownloadVisualize
BU of 6d0g by Molmil
1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3-dioxygenase from Acinetobacter baumannii
Descriptor: BROMIDE ION, MANGANESE (II) ION, Pirin family protein
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Dubrovska, I, Kiryukhina, O, Endres, M, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-10
Release date:2018-04-25
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3-dioxygenase from Acinetobacter baumannii.
To be Published
6CR2
DownloadVisualize
BU of 6cr2 by Molmil
Crystal structure of sterol 14-alpha demethylase (CYP51B) from Aspergillus fumigatus in complex with the VNI derivative N-(1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-(2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl)-1,3,4-oxadiazol-2-yl)benzamide
Descriptor: 14-alpha sterol demethylase Cyp51B, N-[(1R)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl]-4-{5-[2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]-1,3,4-oxadiazol-2-yl}benzamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Friggeri, L, Hargrove, T.Y, Wawrzak, Z, Lepesheva, G.I.
Deposit date:2018-03-16
Release date:2018-06-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Sterol 14 alpha-Demethylase Structure-Based Design of VNI (( R)- N-(1-(2,4-Dichlorophenyl)-2-(1 H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide)) Derivatives To Target Fungal Infections: Synthesis, Biological Evaluation, and Crystallographic Analysis.
J. Med. Chem., 61, 2018
6CMQ
DownloadVisualize
BU of 6cmq by Molmil
Structure of human SHP2 without N-SH2 domain
Descriptor: Tyrosine-protein phosphatase non-receptor type 11
Authors:Padua, R.A.P, Sun, Y, Marko, I, Pitsawong, W, Kern, D.
Deposit date:2018-03-06
Release date:2018-11-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2.
Nat Commun, 9, 2018
4WAA
DownloadVisualize
BU of 4waa by Molmil
Crystal structure of Nix LIR-fused human LC3B_2-119
Descriptor: Microtubule-associated proteins 1A/1B light chain 3B
Authors:Suzuki, H, Ravichandran, A.C, Dobson, R.C.J, Novak, I, Wakatsuki, S.
Deposit date:2014-08-29
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins.
Sci Rep, 7, 2017
7P77
DownloadVisualize
BU of 7p77 by Molmil
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
6D34
DownloadVisualize
BU of 6d34 by Molmil
Apo Crystal Structure of TerC, a Terfestatin Biosynthesis Enzyme
Descriptor: ISOPROPYL ALCOHOL, TerC
Authors:Clinger, J.A, Elshahawi, S.I, Zhang, Y, Hall, R.P, Liu, Y, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2018-04-14
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Function of Terfestatin Biosynthesis Enzymes TerB and TerC
To Be Published
4WBT
DownloadVisualize
BU of 4wbt by Molmil
Crystal structure of histidinol-phosphate aminotransferase from Sinorhizobium meliloti in complex with pyridoxal-5'-phosphate
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Shabalin, I.G, Bacal, P, Kowalska, A.K, Cooper, D.R, Stead, M, Hammonds, J, Ahmed, M, Hillerich, B.S, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-09-03
Release date:2014-09-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of histidinol-phosphate aminotransferase from Sinorhizobium meliloti in complex with pyridoxal-5'-phosphate
to be published
6CXD
DownloadVisualize
BU of 6cxd by Molmil
Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution
Descriptor: Peptidase B, SULFATE ION
Authors:Woinska, M, Lipowska, J, Shabalin, I.G, Cymborowski, M, Grimshaw, S, Winsor, J, Shuvalova, L, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-02
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain.
Febs J., 287, 2020
6CSZ
DownloadVisualize
BU of 6csz by Molmil
TFE-induced NMR structure of a novel bioactive peptide (PaDBS1R3) derived from a Pyrobaculum aerophilum ribosomal protein (L39e)
Descriptor: PaDBS1R3
Authors:Cardoso, M.H, Chan, L.Y, Candido, E.S, Torres, M.T, Oshiro, K.G.N, Silva, I.C, Goncalves, S, Buccini, D.F, Lu, T, Santos, N.C, de la Fuente-Nunez, C, Craik, D.J, Franco, O.L.
Deposit date:2018-03-21
Release date:2019-09-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An N-capping asparagine-lysine-proline (NKP) motif contributes to a hybrid flexible/stable multifunctional peptide scaffold
Chem Sci, 13, 2022
6CSK
DownloadVisualize
BU of 6csk by Molmil
TFE-induced NMR structure of a novel bioactive peptide (PaDBS1R2) derived from a Pyrobaculum aerophilum ribosomal protein (L39e)
Descriptor: PaDBS1R2
Authors:Cardoso, M.H, Chan, L.Y, Candido, E.S, Torres, M.T, Oshiro, K.G.N, Silva, I.C, Goncalves, S, Buccini, D.F, Lu, T, Santos, N.C, de la Fuente-Nunez, C, Craik, D.J, Franco, O.L.
Deposit date:2018-03-20
Release date:2019-09-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An N-capping asparagine-lysine-proline (NKP) motif contributes to a hybrid flexible/stable multifunctional peptide scaffold
Chem Sci, 13, 2022
6D7V
DownloadVisualize
BU of 6d7v by Molmil
Crystal Structure of Rat TRPV6*- in complex with brominated 2-Aminoethoxydiphenyl borate (2-APB-Br)
Descriptor: 2-aminoethyl (4-bromophenyl)phenylborinate, CALCIUM ION, Transient receptor potential cation channel subfamily V member 6
Authors:Singh, A.K, Saotome, K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2018-04-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB.
Nat Commun, 9, 2018
4V2X
DownloadVisualize
BU of 4v2x by Molmil
High resolution structure of the full length tri-modular endo-beta-1, 4-glucanase B (Cel5B) from Bacillus halodurans
Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ...
Authors:Venditto, I, Santos, H, Ferreira, L.M.A, Sakka, K, Fontes, C.M.G.A, Najmudin, S.
Deposit date:2014-10-15
Release date:2015-02-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Family 46 Carbohydrate-Binding Modules Contribute to the Enzymatic Hydrolysis of Xyloglucan and Beta-1,3-1,4-Glucans Through Distinct Mechanisms.
J.Biol.Chem., 290, 2015
6D7S
DownloadVisualize
BU of 6d7s by Molmil
Cryo-EM structure of human TRPV6-Y467A in amphipols
Descriptor: Transient receptor potential cation channel subfamily V member 6
Authors:Singh, A.K, Saotome, K, McGoldrick, L.L, Sobolevsky, A.I.
Deposit date:2018-04-25
Release date:2018-07-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.34 Å)
Cite:Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB.
Nat Commun, 9, 2018

224931

數據於2024-09-11公開中

PDB statisticsPDBj update infoContact PDBjnumon