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PDB: 17822 results

5TIQ
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BU of 5tiq by Molmil
The Structure of the Major Capsid protein of PBCV-1
Descriptor: 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranose, MERCURY (II) ION, Major capsid protein, ...
Authors:Klose, T, De Castro, C, Speciale, I, Molinaro, A, Van Etten, J.L, Rossmann, M.G.
Deposit date:2016-10-03
Release date:2017-10-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.537 Å)
Cite:Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6I1V
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BU of 6i1v by Molmil
Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context)
Descriptor: RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3')
Authors:Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z.
Deposit date:2018-10-30
Release date:2019-11-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Sci Rep, 9, 2019
5TH1
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BU of 5th1 by Molmil
Crystal structure of H10 hemagglutinin mutant (K158aA-Q226L-G228S) from Jiangxi-Donghu (2013) H10N8 influenza virus in complex with 6'-SLNLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
Authors:Tzarum, N, Wilson, I.A.
Deposit date:2016-09-28
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:The 150-Loop Restricts the Host Specificity of Human H10N8 Influenza Virus.
Cell Rep, 19, 2017
5THF
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BU of 5thf by Molmil
Crystal structure of H3 hemagglutinin with insertion of two amino acids in the 150-loop from the A/Hong Kong/1/1968 (H3N2) influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
Authors:Tzarum, N, Wilson, I.A.
Deposit date:2016-09-29
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:The 150-Loop Restricts the Host Specificity of Human H10N8 Influenza Virus.
Cell Rep, 19, 2017
4XTA
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BU of 4xta by Molmil
MECHANISMS OF PPARgamma ACTIVATION BY NON-STEROIDAL ANTI-INFLAMMATORY DRUGS
Descriptor: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:Puhl, A.C, Webb, P, Polikarpov, I.
Deposit date:2015-01-23
Release date:2015-11-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanisms of peroxisome proliferator activated receptor gamma regulation by non-steroidal anti-inflammatory drugs.
Nucl Recept Signal, 13, 2015
6I4V
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BU of 6i4v by Molmil
Alpha-1-antitrypsin Queen's (K154N) variant
Descriptor: 3-trimethylsilylpropane-1-sulfonic acid, Alpha-1-antitrypsin, GLYCINE
Authors:Aldobiyan, I, Lomas, D.A, Irving, J.A.
Deposit date:2018-11-12
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural determinants of instability in alpha-1-antitrypsin
To Be Published
5IHY
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BU of 5ihy by Molmil
The crystal structure of Bacillus subtilis SeMet-YpgQ
Descriptor: NICKEL (II) ION, Uncharacterized protein
Authors:Jeon, Y.J, Song, W.S, Yoon, S.I.
Deposit date:2016-03-01
Release date:2016-04-27
Last modified:2016-06-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical characterization of bacterial YpgQ protein reveals a metal-dependent nucleotide pyrophosphohydrolase
J.Struct.Biol., 195, 2016
4D09
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BU of 4d09 by Molmil
PDE2a catalytic domain in complex with a brain penetrant inhibitor
Descriptor: CGMP-DEPENDENT 3', 5'-CYCLIC PHOSPHODIESTERASE, MAGNESIUM ION, ...
Authors:Buijnsters, P, Andres, J.I, DeAngelis, M, Langlois, X, Rombouts, F, Sanderson, W, Tresadern, G, Trabanco, A, VanHoof, G, VanRoosbroeck, Y.
Deposit date:2014-04-24
Release date:2014-08-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Design of a Potent, Selective, and Brain Penetrating Pde2 Inhibitor with Demonstrated Target Engagement.
Acs Med.Chem.Lett., 5, 2014
6I97
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BU of 6i97 by Molmil
Structure of the ferrioxamine B transporter FoxA from Pseudomonas aeruginosa in complex with ferrioxamine B and a C-terminal TonB fragment
Descriptor: Ferrioxamine B, Protein TonB, TonB-dependent receptor
Authors:Josts, I, Tidow, H.
Deposit date:2018-11-22
Release date:2019-08-28
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Ternary structure of the outer membrane transporter FoxA with resolved signalling domain provides insights into TonB-mediated siderophore uptake.
Elife, 8, 2019
4CU2
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BU of 4cu2 by Molmil
C-terminal domain of CTP1L endolysin mutant V195P that reduces autoproteolysis
Descriptor: ENDOLYSIN
Authors:Dunne, M, Mertens, H.D.T, Garefalaki, V, Jeffries, C.M, Thompson, A, Lemke, E.A, Svergun, D.I, Mayer, M.J, Narbad, A, Meijers, R.
Deposit date:2014-03-16
Release date:2014-08-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:The Cd27L and Ctp1L Endolysins Targeting Clostridia Contain a Built-in Trigger and Release Factor.
Plos Pathog., 10, 2014
5II5
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BU of 5ii5 by Molmil
Crystal structure of red abalone VERL repeat 1 at 1.8 A resolution
Descriptor: Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor, TRIETHYLENE GLYCOL, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Sadat Al-Hosseini, H, Raj, I, Nishimura, K, Jovine, L.
Deposit date:2016-03-01
Release date:2017-06-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017
4H9M
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BU of 4h9m by Molmil
The first Jack bean urease (Canavalia ensiformis) complex obtained at 1.52 resolution
Descriptor: 1,2-ETHANEDIOL, ACETOHYDROXAMIC ACID, NICKEL (II) ION, ...
Authors:Begum, A, Choudhary, M.I, Betzel, C.
Deposit date:2012-09-24
Release date:2012-10-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The first Jack bean urease (Canavalia ensiformis) complex obtained at 1.52 resolution
TO BE PUBLISHED
4XA3
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BU of 4xa3 by Molmil
Crystal structure of the coiled-coil surrounding Skip 2 of MYH7
Descriptor: Gp7-MYH7(1361-1425)-Eb1 chimera protein
Authors:Taylor, K.C, Buvoli, M, Korkmaz, E.N, Buvoli, A, Zheng, Y, Heinz, N.T, Qiang, C, Leinwand, L.A, Rayment, I.
Deposit date:2014-12-12
Release date:2015-07-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.548 Å)
Cite:Skip residues modulate the structural properties of the myosin rod and guide thick filament assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
4XAW
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BU of 4xaw by Molmil
Crystal structure of human 4E10 Fab in complex with its peptide epitope on HIV-1 gp41: Crystals cryoprotected with phosphatidic acid (08:0 PA)
Descriptor: 4E10 Fab heavy chain, 4E10 Fab light chain, FRAGMENT OF HIV GLYCOPROTEIN (GP41) including the MPER region 671-683, ...
Authors:Irimia, A, Stanfield, R.L, Wilson, I.A.
Deposit date:2014-12-15
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10.
Immunity, 44, 2016
6IKT
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BU of 6ikt by Molmil
K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor: (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, CADMIUM ION, NICKEL (II) ION, ...
Authors:Lee, I.H, Kang, L.W.
Deposit date:2018-10-16
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
To be published
6IL0
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BU of 6il0 by Molmil
K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor: NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:Lee, I.H, Kang, L.W.
Deposit date:2018-10-16
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
To be published
6IL9
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BU of 6il9 by Molmil
One Glycerol complexed Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
Descriptor: Fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi in complex with 1 glycerol, GLYCEROL, ZINC ION
Authors:Choi, M.Y, Kang, L.W, Ho, T.H, Nguyen, D.Q, Lee, I.H, Lee, J.H, Park, Y.S, Park, H.J.
Deposit date:2018-10-17
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.72005355 Å)
Cite:Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
To Be Published
5IKD
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BU of 5ikd by Molmil
Asymmetric sulfoxidation by engineering the heme pocket of a dye-decolorizing peroxidase
Descriptor: Dye-decolorizing peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Romero, A, Davo-Siguero, I, Martinez, A.T.
Deposit date:2016-03-03
Release date:2016-07-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.109 Å)
Cite:Asymmetric sulfoxidation by engineering the heme pocket of a dye-decolorizing peroxidase
Catalysis Science And Technology, 2016
4HJV
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BU of 4hjv by Molmil
Crystal structure of E. coli MltE with bound bulgecin and murodipeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid, 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, Endo-type membrane-bound lytic murein transglycosylase A, ...
Authors:Fibriansah, G, Gliubich, F.I, Thunnissen, A.-M.W.H.
Deposit date:2012-10-14
Release date:2012-10-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:On the Mechanism of Peptidoglycan Binding and Cleavage by the endo-Specific Lytic Transglycosylase MltE from Escherichia coli.
Biochemistry, 51, 2012
6RK6
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BU of 6rk6 by Molmil
Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity.
Descriptor: MANGANESE (II) ION, Oligoribonuclease
Authors:Piotrowski, Y, Berg, K, Klebl, D.P, Leiros, I, Larsen, A.N.
Deposit date:2019-04-30
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity.
Febs Open Bio, 9, 2019
4Y0Q
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BU of 4y0q by Molmil
Bovine beta-lactoglobulin complex with pramocaine crystallized from sodium citrate (BLG-PRM1)
Descriptor: Beta-lactoglobulin, Pramocaine
Authors:Loch, J.I, Bonarek, P, Polit, A, Jablonski, M, Czub, M, Ye, X, Lewinski, K.
Deposit date:2015-02-06
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:beta-Lactoglobulin interactions with local anaesthetic drugs - Crystallographic and calorimetric studies.
Int.J.Biol.Macromol., 80, 2015
35C8
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BU of 35c8 by Molmil
CATALYTIC ANTIBODY 5C8, FAB-INHIBITOR COMPLEX
Descriptor: IGG 5C8, N-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE
Authors:Gruber, K, Wilson, I.A.
Deposit date:1998-03-18
Release date:1999-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for antibody catalysis of a disfavored ring closure reaction.
Biochemistry, 38, 1999
4XA8
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BU of 4xa8 by Molmil
Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2
Descriptor: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
Authors:Handing, K.B, Gasiorowska, O.A, Shabalin, I.G, Cymborowski, M.T, Bonanno, J, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-12-12
Release date:2015-01-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2.
to be published
4XH6
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BU of 4xh6 by Molmil
Crystal structure of proto-oncogene kinase Pim1 bound to hispidulin
Descriptor: 5,7-dihydroxy-2-(4-hydroxyphenyl)-6-methoxy-4H-chromen-4-one, Serine/threonine-protein kinase pim-1
Authors:Su, M.-Y, Chang, C.-I.
Deposit date:2015-01-05
Release date:2015-08-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Total Synthesis of Hispidulin and the Structural Basis for Its Inhibition of Proto-oncogene Kinase Pim-1
J.Nat.Prod., 78, 2015
5UG6
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BU of 5ug6 by Molmil
Perforin C2 Domain - T431D
Descriptor: IODIDE ION, Perforin-1
Authors:Law, R.H.P, Conroy, P.J, Voskoboinik, I, Whisstock, J.C.
Deposit date:2017-01-07
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Perforin proteostasis is regulated through its C2 domain: supra-physiological cell death mediated by T431D-perforin.
Cell Death Differ., 25, 2018

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