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PDB: 17965 results

5BZW
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BU of 5bzw by Molmil
Crystal Structure of PCDN-27B, an antibody from the PCDN family of HIV-1 antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2B3 HIV Antibody heavy chain, 2B3 HIV Antibody light chain, ...
Authors:Garces, F, WILSON, I.A.
Deposit date:2015-06-11
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch.
Immunity, 44, 2016
1LZI
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Glycosyltransferase A + UDP + H antigen acceptor
Descriptor: Glycosyltransferase A, MANGANESE (II) ION, MERCURY (II) ION, ...
Authors:Patenaude, S.I, Seto, N.O.L, Borisova, S.N, Szpacenko, A, Marcus, S.L, Palcic, M.M, Evans, S.V.
Deposit date:2002-06-10
Release date:2002-08-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The structural basis for specificity in human ABO(H) blood group biosynthesis.
Nat.Struct.Biol., 9, 2002
5TC0
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BU of 5tc0 by Molmil
Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate
Descriptor: N-(2-{4-[(2S)-4-(methylsulfonyl)morpholin-2-yl]-1,3-thiazol-2-yl}phenyl)-1H-imidazole-2-carboxamide, Tyrosine-protein kinase Mer
Authors:Hoffman, I.D, Lawson, J.D.
Deposit date:2016-09-13
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate.
Bioorg. Med. Chem. Lett., 27, 2017
6YZ7
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BU of 6yz7 by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Cr3022, Antibody light chain, ...
Authors:Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
Deposit date:2020-05-06
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published, 2020
5NOY
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Structure of cyclophilin A in complex with 3,4-diaminobenzamide
Descriptor: 3,4-bis(azanyl)benzamide, Peptidyl-prolyl cis-trans isomerase A
Authors:Georgiou, C, Mcnae, I.W, Ioannidis, H, Julien, M, Walkinshaw, M.D.
Deposit date:2017-04-13
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Pushing the Limits of Detection of Weak Binding Using Fragment-Based Drug Discovery: Identification of New Cyclophilin Binders.
J. Mol. Biol., 429, 2017
8ATJ
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BU of 8atj by Molmil
Crystal Structure of Shank2-SAM domain
Descriptor: CHLORIDE ION, FORMIC ACID, Isoform 4 of SH3 and multiple ankyrin repeat domains protein 2, ...
Authors:Bento, I, Gracia Alai, M, Kreienkamp, J.-H.
Deposit date:2022-08-23
Release date:2022-11-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:Structural deficits in key domains of Shank2 lead to alterations in postsynaptic nanoclusters and to a neurodevelopmental disorder in humans.
Mol Psychiatry, 2022
5TD2
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BU of 5td2 by Molmil
Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate
Descriptor: N-[2-{4-[(2S)-4-(methylsulfonyl)morpholin-2-yl]-1,3-thiazol-2-yl}-4-(morpholin-4-yl)phenyl]-1H-imidazole-2-carboxamide, Tyrosine-protein kinase Mer
Authors:Hoffman, I.D, Lawson, J.D.
Deposit date:2016-09-16
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate.
Bioorg. Med. Chem. Lett., 27, 2017
6RZY
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BU of 6rzy by Molmil
Plasmodium falciparum PFA0660w Hsp40 co-chaperone J-domain
Descriptor: Heat shock protein 40, type II
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
8AKO
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BU of 8ako by Molmil
Structure of EspB-EspK complex: the non-identical twin of the PE-PPE-EspG secretion mechanism.
Descriptor: ESX-1 secretion-associated protein EspB, ESX-1 secretion-associated protein EspK
Authors:Gijsbers, A, Eymery, M, Menart, I, Vinciauskaite, V, Gao, Y, Siliqi, D, Peters, P, Mccarthy, A, Ravelli, R.B.G.
Deposit date:2022-07-30
Release date:2022-12-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.293 Å)
Cite:The crystal structure of the EspB-EspK virulence factor-chaperone complex suggests an additional type VII secretion mechanism in Mycobacterium tuberculosis.
J.Biol.Chem., 299, 2022
2NNR
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BU of 2nnr by Molmil
Crystal structure of chagasin, cysteine protease inhibitor from Trypanosoma cruzi
Descriptor: CHLORIDE ION, Chagasin, GLYCEROL, ...
Authors:Redzynia, I, Bujacz, G, Ljunggren, A, Jaskolski, M, Abrahamson, M.
Deposit date:2006-10-24
Release date:2007-07-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the parasite protease inhibitor chagasin in complex with a host target cysteine protease
J.Mol.Biol., 371, 2007
6E85
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BU of 6e85 by Molmil
1.25 Angstrom Resolution Crystal Structure of 4-hydroxythreonine-4-phosphate Dehydrogenase from Klebsiella pneumoniae.
Descriptor: CHLORIDE ION, D-threonate 4-phosphate dehydrogenase, FORMIC ACID, ...
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Kiryukhina, O, Endres, M, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-07-27
Release date:2018-08-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.
Microbiol Resour Announc, 12, 2023
6ZHI
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BU of 6zhi by Molmil
Structure of the Plasmodium falciparum Hsp70-x substrate binding domain in complex with hydrophobic peptide
Descriptor: ASN-ARG-LEU-LEU-LEU-THR-GLY, Heat shock protein 70
Authors:Schmidt, J, Vakonakis, I.
Deposit date:2020-06-23
Release date:2020-09-09
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of the substrate-binding domain of Plasmodium falciparum heat-shock protein 70-x.
Acta Crystallogr.,Sect.F, 76, 2020
5F91
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BU of 5f91 by Molmil
Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator (N-(5-(azepan-1-ylsulfonyl)-2-methoxyphenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide)
Descriptor: CHLORIDE ION, FORMIC ACID, Fumarate hydratase class II, ...
Authors:Kasbekar, M, Fischer, G, Mott, B.T, Yasgar, A, Hyvonen, M, Boshoff, H.I, Abell, C, Barry, C.E, Thomas, C.J.
Deposit date:2015-12-09
Release date:2016-06-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Selective small molecule inhibitor of the Mycobacterium tuberculosis fumarate hydratase reveals an allosteric regulatory site.
Proc.Natl.Acad.Sci.USA, 113, 2016
5C9H
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BU of 5c9h by Molmil
Structural Basis of Template Boundary Definition in Tetrahymena Telomerase
Descriptor: MAGNESIUM ION, RNA (5'-R(P*AP*GP*AP*AP*CP*UP*GP*UP*CP*A)-3'), RNA (5'-R(P*UP*CP*AP*UP*UP*CP*AP*GP*UP*UP*CP*U)-3'), ...
Authors:Jansson, L.I, Akiyama, B.M, Ooms, A, Lu, C, Rubin, S.M, Stone, M.D.
Deposit date:2015-06-26
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of template-boundary definition in Tetrahymena telomerase.
Nat.Struct.Mol.Biol., 22, 2015
1P2Q
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BU of 1p2q by Molmil
Structural consequences of accommodation of four non-cognate amino-acid residues in the S1 pocket of bovine trypsin and chymotrypsin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Chymotrypsinogen A, Pancreatic trypsin inhibitor, ...
Authors:Helland, R, Czapinska, H, Leiros, I, Olufsen, M, Otlewski, J, Smalaas, A.O.
Deposit date:2003-04-15
Release date:2004-04-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of accommodation of four non-cognate amino acid residues in the S1 pocket of bovine trypsin and chymotrypsin.
J.Mol.Biol., 333, 2003
6EMF
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BU of 6emf by Molmil
Crystal structure of Rrp1 from Chaetomium thermophilum in space group C2
Descriptor: 1,2-ETHANEDIOL, G0S4M2, PROLINE
Authors:Ahmed, Y.L, Sinning, I.
Deposit date:2017-10-02
Release date:2017-12-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Cell, 171, 2017
4N34
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BU of 4n34 by Molmil
Structure of langerin CRD I313 with alpha-MeGlcNAc
Descriptor: C-type lectin domain family 4 member K, CALCIUM ION, methyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside
Authors:Feinberg, H, Rowntree, T.J.W, Tan, S.L.W, Drickamer, K, Weis, W.I, Taylor, M.E.
Deposit date:2013-10-06
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Common polymorphisms in human langerin change specificity for glycan ligands.
J.Biol.Chem., 288, 2013
1P4R
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BU of 1p4r by Molmil
Crystal Structure of Human ATIC in complex with folate-based inhibitor BW1540U88UD
Descriptor: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, Bifunctional purine biosynthesis protein PURH, N-[(S)-(4-{[(2-AMINO-4-HYDROXYQUINAZOLIN-6-YL)(DIHYDROXY)-LAMBDA~4~-SULFANYL]AMINO}PHENYL)(HYDROXY)METHYL]-L-GLUTAMIC ACID, ...
Authors:Cheong, C.-G, Greasley, S.E, Horton, P.A, Beardsley, G.P, Wilson, I.A.
Deposit date:2003-04-23
Release date:2004-03-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures of human bifunctional enzyme aminoimidazole-4-carboxamide ribonucleotide transformylase/IMP cyclohydrolase in complex with potent sulfonyl-containing antifolates
J.Biol.Chem., 279, 2004
5NKO
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BU of 5nko by Molmil
Solution structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF)
Descriptor: Ribosome hibernation promotion factor
Authors:Usachev, K.S, Khusainov, I.S, Ayupov, R.K, Validov, S.Z, Kieffer, B, Yusupov, M.M.
Deposit date:2017-03-31
Release date:2017-07-05
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
5CEA
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BU of 5cea by Molmil
Bd3460 Immunity Protein from Bdellovibrio bacteriovorus
Descriptor: Bd3460
Authors:Lovering, A.L, Cadby, I.T, Lambert, C, Sockett, R.E.
Deposit date:2015-07-06
Release date:2015-12-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ankyrin-mediated self-protection during cell invasion by the bacterial predator Bdellovibrio bacteriovorus.
Nat Commun, 6, 2015
8J3T
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BU of 8j3t by Molmil
Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand
Descriptor: (4R)-1-[1-[(S)-[1-cyclopentyl-3-(2-methylphenyl)pyrazol-4-yl]-(4-methylphenyl)methyl]-2-oxidanylidene-pyridin-3-yl]-3-methyl-2-oxidanylidene-N-(3-oxidanylidene-2-azabicyclo[2.2.2]octan-4-yl)imidazolidine-4-carboxamide, Assemblin
Authors:Yoshida, S, Sako, Y, Nikaido, E, Ueda, T, Kozono, I, Ichihashi, Y, Nakahashi, A, Onishi, M, Yamatsu, Y, Kato, T, Nishikawa, J, Tachibana, Y.
Deposit date:2023-04-18
Release date:2023-11-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Peptide-to-Small Molecule: Discovery of Non-Covalent, Active-Site Inhibitors of beta-Herpesvirus Proteases.
Acs Med.Chem.Lett., 14, 2023
1UDY
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BU of 1udy by Molmil
Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA
Descriptor: 3-THIAOCTANOYL-COENZYME A, Acyl-CoA dehydrogenase, medium-chain specific, ...
Authors:Satoh, A, Nakajima, Y, Miyahara, I, Hirotsu, K, Tanaka, T, Nishina, Y, Shiga, K, Tamaoki, H, Setoyama, C, Miura, R.
Deposit date:2003-05-07
Release date:2003-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA
J.BIOCHEM.(TOKYO), 134, 2003
8AW4
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BU of 8aw4 by Molmil
Structure of a complex of biosynthetic proteins bB-E3 and bGFPD-YY
Descriptor: ALPHAREP bB-E3, ALPHAREP bGFPD-YY
Authors:Li de la Sierra-Gallay, I.
Deposit date:2022-08-29
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Hot spot induction allows selection of protein binders targeted to a predefined region of a bait protein
To Be Published
4C4G
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BU of 4c4g by Molmil
Structure-based design of orally bioavailable pyrrolopyridine inhibitors of the mitotic kinase MPS1
Descriptor: 1,2-ETHANEDIOL, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, DUAL SPECIFICITY PROTEIN KINASE TTK, ...
Authors:Naud, S, Westwood, I.M, Faisal, A, Sheldrake, P, Bavetsias, V, Atrash, B, Liu, M, Hayes, A, Schmitt, J, Wood, A, Choi, V, Boxall, K, Mak, G, Gurden, M, Valenti, M, de Haven Brandon, A, Henley, A, Baker, R, McAndrew, C, Matijssen, B, Burke, R, Eccles, S.A, Raynaud, F.I, Linardopoulos, S, van Montfort, R, Blagg, J.
Deposit date:2013-09-05
Release date:2013-12-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-Based Design of Orally Bioavailable 1H-Pyrrolo[3, 2-C]Pyridine Inhibitors of the Mitotic Kinase Monopolar Spindle 1 (Mps1).
J.Med.Chem., 56, 2013
2KOD
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BU of 2kod by Molmil
A high-resolution NMR structure of the dimeric C-terminal domain of HIV-1 CA
Descriptor: HIV-1 CA C-terminal domain
Authors:Byeon, I.-J.L, Jung, J, Ahn, J, concel, J, Gronenborn, A.M.
Deposit date:2009-09-18
Release date:2009-11-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural convergence between Cryo-EM and NMR reveals intersubunit interactions critical for HIV-1 capsid function.
Cell(Cambridge,Mass.), 139, 2009

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