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PDB: 173 results

6AEG
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BU of 6aeg by Molmil
Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM)
Descriptor: DNA (25-MER), DNA (5'-D(*AP*AP*AP*GP*AP*TP*TP*AP*TP*TP*G)-3'), DNA nuclease, ...
Authors:Guo, M, Ren, K, Zhu, Y, Huang, Z.
Deposit date:2018-08-04
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Structural insights into a high fidelity variant of SpCas9.
Cell Res., 29, 2019
6AEB
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BU of 6aeb by Molmil
Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM)
Descriptor: DNA (25-MER), DNA (5'-D(*AP*AP*AP*AP*AP*GP*TP*AP*TP*TP*G)-3'), DNA Nuclease, ...
Authors:Guo, M, Ren, K, Zhu, Y, Huang, Z.
Deposit date:2018-08-04
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Structural insights into a high fidelity variant of SpCas9.
Cell Res., 29, 2019
3FA1
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BU of 3fa1 by Molmil
Crystal Structure of Tellurium Derivatized DNA
Descriptor: 5'-D(*DGP*(UMS)P*DGP*(TTI)P*DAP*DCP*DAP*DC)-3'
Authors:Sheng, J, Tatsuya, M, Hassan, A.E, Huang, Z.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Tellurium Derivatized DNA
To be Published
4YS5
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BU of 4ys5 by Molmil
DNA sequence containing 2'-Se-dC modification
Descriptor: DNA (5'-D(*GP*TP*GP*GP*(2SC)P*CP*AP*C)-3')
Authors:Kong, C, Zhang, W, Salon, J, Huang, Z.
Deposit date:2015-03-16
Release date:2016-02-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:DNA sequence containing 2'-Se-dC modification.
To Be Published
3GCG
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BU of 3gcg by Molmil
crystal structure of MAP and CDC42 complex
Descriptor: Cell division control protein 42 homolog, L0028 (Mitochondria associated protein)
Authors:Chai, J, Huang, Z, Feng, Y, Wu, X.
Deposit date:2009-02-22
Release date:2009-07-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into host GTPase isoform selection by a family of bacterial GEF mimics
Nat.Struct.Mol.Biol., 16, 2009
3HGA
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BU of 3hga by Molmil
Crystal Structure of 4-Se-Uridine Derivatized RNA
Descriptor: 5'-R(*UP*(US5)P*CP*GP*CP*G)-3'
Authors:Sheng, J, Soares, A, Huang, Z.
Deposit date:2009-05-13
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Oxygen Replacement with Selenium at the Uridine 4-Position for RNA Structure Study and Visualization
To be Published
3HGD
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BU of 3hgd by Molmil
Crystal Structure of 2-Se-Thymidine Derivatized DNA
Descriptor: 5'-D(*GP*(UMS)P*GP*(US3)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Hassan, A.E, Zhang, W, Huang, Z.
Deposit date:2009-05-13
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:High fidelity of base pairing by 2-selenothymidine in DNA.
J.Am.Chem.Soc., 132, 2010
3IJK
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BU of 3ijk by Molmil
5-OMe modified DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Zhang, W, Hassan, A.E.A, Gan, J, Huang, Z.
Deposit date:2009-08-04
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
4DSI
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BU of 4dsi by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSJ
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BU of 4dsj by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSL
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BU of 4dsl by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
Descriptor: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA polymerase, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
6IIJ
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BU of 6iij by Molmil
Cryo-EM structure of CV-A10 mature virion
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Chen, J.H, Ye, X.H, Cong, Y, Huang, Z.
Deposit date:2018-10-06
Release date:2018-11-07
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Coxsackievirus A10 atomic structure facilitating the discovery of a broad-spectrum inhibitor against human enteroviruses.
Cell Discov, 5, 2019
6IIO
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BU of 6iio by Molmil
Cryo-EM structure of CV-A10 native empty particle
Descriptor: VP0, VP1, VP3
Authors:Chen, J.H, Ye, X.H, Cong, Y, Huang, Z.
Deposit date:2018-10-07
Release date:2018-11-07
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Coxsackievirus A10 atomic structure facilitating the discovery of a broad-spectrum inhibitor against human enteroviruses.
Cell Discov, 5, 2019
4DWI
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BU of 4dwi by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self complementary DNA, Se-dGTP and Calcium
Descriptor: 9-METHYLGUANINE, CALCIUM ION, DNA (5'-D(*AP*CP*TP*GP*GP*AP*TP*CP*CP*A)-3'), ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-24
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSK
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BU of 4dsk by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium
Descriptor: CALCIUM ION, DNA (5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*CP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4F4N
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BU of 4f4n by Molmil
Crystal structure of 2-se-thymidine derivatized dna 8mer
Descriptor: 5'-D(*GP*TP*GP*(US3)P*AP*CP*AP*C)-3'
Authors:Zhang, W, Sheng, J, Huang, Z.
Deposit date:2012-05-10
Release date:2012-06-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of 2-se-thymidine derivatized dna 8mer
TO BE PUBLISHED
4FP6
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BU of 4fp6 by Molmil
DNA octamer d(gtggccac) with 2'-se modification
Descriptor: CHLORIDE ION, DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
Authors:Zhang, W, Sheng, J, Huang, Z.
Deposit date:2012-06-21
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:DNA octamer d(gtggccac) with 2'-se modification
TO BE PUBLISHED
3LTU
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BU of 3ltu by Molmil
5-SeMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5ID6
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BU of 5id6 by Molmil
Structure of Cpf1/RNA Complex
Descriptor: Cpf1, MAGNESIUM ION, RNA (5'-R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*AP*UP*C)-3')
Authors:Dong, D, Ren, K, Qiu, X, Wang, J, Huang, Z.
Deposit date:2016-02-24
Release date:2016-04-27
Last modified:2016-05-11
Method:X-RAY DIFFRACTION (2.382 Å)
Cite:The crystal structure of Cpf1 in complex with CRISPR RNA
Nature, 532, 2016
5KK5
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BU of 5kk5 by Molmil
AsCpf1(E993A)-crRNA-DNA ternary complex
Descriptor: CRISPR-associated endonuclease Cpf1, DNA (28-MER), DNA (8-mer), ...
Authors:Gao, P, Yang, H, Rajashankar, K.R, Huang, Z, Patel, D.J.
Deposit date:2016-06-21
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.289 Å)
Cite:Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition.
Cell Res., 26, 2016
6VQV
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BU of 6vqv by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF9
Descriptor: AcrF9, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VQX
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BU of 6vqx by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF6
Descriptor: AcrF6, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VQW
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BU of 6vqw by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF8
Descriptor: AcrF8, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
8IAZ
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BU of 8iaz by Molmil
Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Descriptor: DNA (5'-D(P*AP*CP*AP*TP*GP*GP*AP*CP*CP*AP*TP*CP*AP*GP*CP*TP*CP*CP*TP*AP*AP*TP*GP*G)-3'), DNA (5'-D(P*CP*CP*AP*TP*TP*AP*GP*GP*AP*GP*CP*TP*GP*AP*TP*G)-3'), RNA (207-MER), ...
Authors:Yin, M, Zhou, F, Zhu, Y, Huang, Z.
Deposit date:2023-02-09
Release date:2024-04-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Discovery and structural mechanism of DNA endonucleases guided by RAGATH-18-derived RNAs.
Cell Res., 34, 2024
4KW0
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BU of 4kw0 by Molmil
Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3'), MAGNESIUM ION
Authors:Jiang, S, Gan, J, Sheng, J, Sun, H, Huang, Z.
Deposit date:2013-05-23
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
TO BE PUBLISHED

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